Mercurial > repos > artbio > repenrich
comparison test-data/chrM_repeatmasker.txt @ 15:2e3d976e7d5d draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 03183e29f807ec33548016a7c4144f52720b7b9e
| author | artbio |
|---|---|
| date | Sun, 21 Apr 2024 09:44:51 +0000 |
| parents | bf866bedd4b4 |
| children |
comparison
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| 14:bf866bedd4b4 | 15:2e3d976e7d5d |
|---|---|
| 1 SW perc perc perc query position in query matching repeat position in repeat | |
| 2 score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID | |
| 3 | |
| 4 16 20.2 5.9 0.0 chrM 1211 1261 (18263) + (TTTTA)n Simple_repeat 1 54 (0) 84486 | |
| 5 13 23.9 2.2 2.2 chrM 2014 2059 (17465) + (TTA)n Simple_repeat 1 46 (0) 84487 | |
| 6 24 18.8 5.3 2.6 chrM 3924 3999 (15525) + (TAT)n Simple_repeat 1 78 (0) 84488 | |
| 7 18 4.5 0.0 0.0 chrM 5961 5983 (13541) + (AT)n Simple_repeat 1 23 (0) 84489 | |
| 8 13 25.9 4.0 4.0 chrM 6247 6320 (13204) + (ATTTAT)n Simple_repeat 1 74 (0) 84490 | |
| 9 11 14.6 7.5 2.4 chrM 8783 8822 (10702) + (CTAATT)n Simple_repeat 1 42 (0) 84491 | |
| 10 17 19.0 0.0 8.6 chrM 9064 9126 (10398) + A-rich Low_complexity 1 58 (0) 84492 | |
| 11 13 21.0 5.9 1.9 chrM 11723 11773 (7751) + (ATA)n Simple_repeat 1 53 (0) 84493 | |
| 12 66 20.4 12.3 12.3 chrM 12823 13001 (6523) C LSU-rRNA_Cel rRNA (1) 2431 2253 84494 | |
| 13 16 16.6 0.0 2.9 chrM 14361 14396 (5128) + (ATT)n Simple_repeat 1 35 (0) 84495 | |
| 14 44 2.4 0.0 0.0 chrM 15966 16007 (3517) + (TA)n Simple_repeat 1 42 (0) 84496 | |
| 15 35 5.3 0.0 0.0 chrM 16559 16597 (2927) + (AT)n Simple_repeat 1 39 (0) 84497 | |
| 16 36 2.9 0.0 0.0 chrM 16922 16956 (2568) + (AT)n Simple_repeat 1 35 (0) 84498 | |
| 17 37 0.0 0.0 0.0 chrM 17040 17071 (2453) + (TA)n Simple_repeat 1 32 (0) 84499 | |
| 18 20 4.3 0.0 0.0 chrM 17417 17440 (2084) + (T)n Simple_repeat 1 24 (0) 84500 | |
| 19 31 6.9 6.3 1.5 chrM 17451 17513 (2011) + (TA)n Simple_repeat 1 66 (0) 84501 | |
| 20 26 17.0 0.0 0.0 chrM 19469 19514 (10) + A-rich Low_complexity 1 46 (0) 84502 | |
| 21 |