Mercurial > repos > artbio > repenrich
diff test-data/356_fraction_counts.tab @ 2:15e3e29f310e draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit c89c33e5ea8fc63f3ea5c0f66ebc5fa822ac734b
author | artbio |
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date | Tue, 19 Sep 2017 17:23:15 -0400 |
parents | f6f0f1e5e940 |
children |
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--- a/test-data/356_fraction_counts.tab Mon Sep 18 17:22:07 2017 -0400 +++ b/test-data/356_fraction_counts.tab Tue Sep 19 17:23:15 2017 -0400 @@ -1,210 +1,210 @@ -LSU-rRNA_Dme rRNA rRNA 5583038 -FW3_DM LINE Jockey 647 -DMTOM1_LTR LTR Gypsy 1403 -R1_DM LINE R1 15424 -TAHRE LINE Jockey 3806 -G4_DM LINE Jockey 2223 -BS LINE Jockey 5200 -Stalker2_I-int LTR Gypsy 10966 -Stalker3_LTR LTR Gypsy 543 -TABOR_I-int LTR Gypsy 5504 -G7_DM LINE Jockey 1949 -BEL_I-int LTR Pao 29338 -Gypsy6_I-int LTR Gypsy 11381 +5S_DM RNA RNA 6331 ACCORD_I-int LTR Gypsy 4103 -DM412B_LTR LTR Gypsy 5607 -G2_DM LINE Jockey 1235 -SSU-rRNA_Hsa rRNA rRNA 563673 -TART_B1 LINE Jockey 13382 -S2_DM DNA TcMar-Tc1 716 -LOOPER1_DM DNA PiggyBac 220 -HOBO DNA hAT-hobo 4375 +ACCORD_LTR LTR Gypsy 790 +ACCORD2_I-int LTR Gypsy 2286 +ACCORD2_LTR LTR Gypsy 213 +ALA_DM Unknown Unknown 9 ARS406_DM Unknown Unknown 755 -G6_DM LINE Jockey 2874 -DOC2_DM LINE Jockey 4511 Baggins1 LINE LOA 5500 -NINJA_LTR LTR Pao 297 -TRANSIB2 DNA CMC-Transib 3357 -Gypsy5_LTR LTR Gypsy 502 -MDG3_LTR LTR Gypsy 926 -Gypsy12A_LTR LTR Gypsy 2436 -Gypsy_LTR LTR Gypsy 3771 -TIRANT_LTR LTR Gypsy 3225 -I_DM LINE I 11479 -DIVER2_I-int LTR Pao 6446 -P-1_DY DNA P 13 -Invader2_I-int LTR Gypsy 5970 -DOC6_DM LINE Jockey 1718 -BURDOCK_LTR LTR Gypsy 543 -SSU-rRNA_Dme rRNA rRNA 9958 -MAX_LTR LTR Pao 958 -STALKER4_LTR LTR Gypsy 2040 -XDMR_DM Unknown Unknown 4049 BARI_DM DNA TcMar-Tc1 1117 -Transib-N1_DM DNA CMC-Transib 366 -Gypsy5_I-int LTR Gypsy 2834 -XDMR Unknown Unknown 1771 -ACCORD2_LTR LTR Gypsy 213 -POGON1 DNA TcMar-Pogo 641 +BARI1 DNA TcMar-Tc1 370 +BATUMI_I-int LTR Pao 4723 +BATUMI_LTR LTR Pao 348 +BEL_I-int LTR Pao 29338 +BEL_LTR LTR Pao 927 +Bica_I-int LTR Gypsy 1561 +Bica_LTR LTR Gypsy 123 +BLASTOPIA_I-int LTR Gypsy 13780 +BLASTOPIA_LTR LTR Gypsy 1038 +BLOOD_I-int LTR Gypsy 27362 +BLOOD_LTR LTR Gypsy 1269 +BS LINE Jockey 5200 +BS2 LINE Jockey 5214 +BS3_DM LINE Jockey 851 BS4_DM LINE Jockey 8 -ALA_DM Unknown Unknown 9 -Gypsy1-I_DM LTR Gypsy 36962 -ACCORD_LTR LTR Gypsy 790 BURDOCK_I-int LTR Gypsy 5190 -ZAM_I-int LTR Gypsy 6896 -Invader5_I-int LTR Gypsy 191 -G3_DM LINE Jockey 480 -ROOA_I-int LTR Pao 4103 -Gypsy1-LTR_DM LTR Gypsy 1432 +BURDOCK_LTR LTR Gypsy 543 +Chimpo_I-int LTR Gypsy 1366 +Chimpo_LTR LTR Gypsy 107 +Chouto_I-int LTR Gypsy 1231 +Chouto_LTR LTR Gypsy 162 +CIRCE LTR Gypsy 3676 +Copia_I-int LTR Copia 50888 +Copia_LTR LTR Copia 2612 +Copia1-I_DM LTR Copia 4100 +Copia1-LTR_DM LTR Copia 600 +Copia2_I-int LTR Copia 3614 +Copia2_LTR_DM LTR Copia 747 +DIVER_I-int LTR Pao 24742 +DIVER_LTR LTR Pao 547 +DIVER2_I-int LTR Pao 6446 +DIVER2_LTR LTR Pao 648 DM1731_I-int LTR Copia 18829 -ROO_I-int LTR Pao 34023 +DM1731_LTR LTR Copia 1274 +DM176_I-int LTR Gypsy 4726 +DM176_LTR LTR Gypsy 560 +DM297_I-int LTR Gypsy 82387 +DM297_LTR LTR Gypsy 6128 DM412 LTR Gypsy 43689 -PROTOP DNA P 4775 -TART-A LINE Jockey 5092 -ROO_LTR LTR Pao 2219 -DIVER_LTR LTR Pao 547 -Gypsy3_I-int LTR Gypsy 5766 -BATUMI_LTR LTR Pao 348 -IDEFIX_LTR LTR Gypsy 2538 -G5_DM LINE Jockey 2714 -HETA LINE Jockey 22459 -Gypsy11_I-int LTR Gypsy 487 -R1-2_DM LINE R1 184 -Gypsy11_LTR LTR Gypsy 159 -HELENA_RT LINE Jockey 934 -FTZ_DM Unknown Unknown 0 -MICROPIA_I-int LTR Gypsy 6941 -Invader4_I-int LTR Gypsy 1888 -PLACW_DM DNA P 277 -BLOOD_LTR LTR Gypsy 1269 -R2_DM LINE R2 54042 -Copia1-I_DM LTR Copia 4100 -Gypsy4_I-int LTR Gypsy 13114 -Chouto_LTR LTR Gypsy 162 -BATUMI_I-int LTR Pao 4723 -DNAREP1_DM RC Helitron 76851 +DM412B_LTR LTR Gypsy 5607 +DMCR1A LINE CR1 17489 +DMLTR5 LTR Gypsy 189 +DMRP1 Unknown Unknown 295 +DMRPR Unknown Unknown 221 +DMRT1A LINE R1 3797 DMRT1B LINE R1 9003 DMRT1C LINE R1 1907 -TLD2 LTR Gypsy 33 -DMRT1A LINE R1 3797 -DM1731_LTR LTR Copia 1274 -LSU-rRNA_Cel rRNA rRNA 363697 -Copia_LTR LTR Copia 2612 +DMTOM1_LTR LTR Gypsy 1403 +DNAREP1_DM RC Helitron 76851 +DOC LINE Jockey 29082 +DOC2_DM LINE Jockey 4511 +DOC3_DM LINE Jockey 11067 +DOC4_DM LINE Jockey 1030 +DOC5_DM LINE Jockey 1793 +DOC6_DM LINE Jockey 1718 +FB4_DM DNA TcMar-Tc1 7840 +FROGGER_I-int LTR Copia 1075 +FROGGER_LTR LTR Copia 85 +FTZ_DM Unknown Unknown 0 +FUSHI_DM Unknown Unknown 0 +FW2_DM LINE Jockey 17723 +FW3_DM LINE Jockey 647 +G_DM LINE Jockey 10948 +G2_DM LINE Jockey 1235 +G3_DM LINE Jockey 480 +G4_DM LINE Jockey 2223 +G5_DM LINE Jockey 2714 +G5A_DM LINE Jockey 1578 +G6_DM LINE Jockey 2874 +G7_DM LINE Jockey 1949 +GTWIN_I-int LTR Gypsy 7568 +GTWIN_LTR LTR Gypsy 2533 +Gypsy_I-int LTR Gypsy 24082 +Gypsy_LTR LTR Gypsy 3771 +Gypsy1-I_DM LTR Gypsy 36962 +Gypsy1-LTR_DM LTR Gypsy 1432 +Gypsy10_I-int LTR Gypsy 2236 +Gypsy10_LTR LTR Gypsy 363 +Gypsy11_I-int LTR Gypsy 487 +Gypsy11_LTR LTR Gypsy 159 +Gypsy12_I-int LTR Gypsy 5002 +Gypsy12_LTR LTR Gypsy 7572 +Gypsy12A_LTR LTR Gypsy 2436 +Gypsy2_I-int LTR Gypsy 4226 +Gypsy2_LTR LTR Gypsy 869 +Gypsy2-I_DM LTR Gypsy 7374 +Gypsy2-LTR_DM LTR Gypsy 1155 +Gypsy3_I-int LTR Gypsy 5766 +Gypsy3_LTR LTR Gypsy 681 +Gypsy4_I-int LTR Gypsy 13114 +Gypsy4_LTR LTR Gypsy 390 +Gypsy5_I-int LTR Gypsy 2834 +Gypsy5_LTR LTR Gypsy 502 +Gypsy6_I-int LTR Gypsy 11381 Gypsy6_LTR LTR Gypsy 1423 -Gypsy12_I-int LTR Gypsy 5002 -BLASTOPIA_LTR LTR Gypsy 1038 -Bica_LTR LTR Gypsy 123 +Gypsy6A_LTR LTR Gypsy 793 +Gypsy7_I-int LTR Gypsy 1162 +Gypsy7_LTR LTR Gypsy 80 +Gypsy8_I-int LTR Gypsy 4176 Gypsy8_LTR LTR Gypsy 1467 -NINJA_I-int LTR Pao 3676 -PROTOP_B DNA P 9371 -PROTOP_A DNA P 4465 +Gypsy9_I-int LTR Gypsy 429 +Gypsy9_LTR LTR Gypsy 62 +HELENA_RT LINE Jockey 934 +Helitron1_DM RC Helitron 0 +HETA LINE Jockey 22459 +HMSBEAGLE_I-int LTR Gypsy 7863 +HOBO DNA hAT-hobo 4375 +I_DM LINE I 11479 +IDEFIX_I-int LTR Gypsy 7222 +IDEFIX_LTR LTR Gypsy 2538 +Invader1_I-int LTR Gypsy 2993 +Invader1_LTR LTR Gypsy 2525 +Invader2_I-int LTR Gypsy 5970 +Invader2_LTR LTR Gypsy 417 +Invader3_I-int LTR Gypsy 4411 Invader3_LTR LTR Gypsy 506 -Chimpo_LTR LTR Gypsy 107 -Invader2_LTR LTR Gypsy 417 -BLASTOPIA_I-int LTR Gypsy 13780 -FROGGER_LTR LTR Copia 85 +Invader4_I-int LTR Gypsy 1888 +Invader4_LTR LTR Gypsy 1624 +Invader5_I-int LTR Gypsy 191 +Invader5_LTR LTR Gypsy 47 +Invader6_I-int LTR Gypsy 6566 +Invader6_LTR LTR Gypsy 312 +IVK_DM LINE I 3025 +Jockey2 LINE Jockey 1823 +LINEJ1_DM LINE Jockey 24891 +LmeSINE1c SINE tRNA-Deu-L2 627 +LOOPER1_DM DNA PiggyBac 220 +LSU-rRNA_Cel rRNA rRNA 363697 +LSU-rRNA_Dme rRNA rRNA 5583038 +LSU-rRNA_Hsa rRNA rRNA 15 +M4DM DNA CMC-Transib 1880 +Mariner2_DM DNA TcMar-Tc1 1096 +MAX_I-int LTR Pao 8914 +MAX_LTR LTR Pao 958 +MDG1_I-int LTR Gypsy 16306 +MDG1_LTR LTR Gypsy 650 +MDG3_I-int LTR Gypsy 7857 +MDG3_LTR LTR Gypsy 926 +MICROPIA_I-int LTR Gypsy 6941 +MICROPIA_LTR LTR Gypsy 460 +MINOS DNA TcMar-Tc1 273 +MuDR-1_DEl DNA MULE-NOF 32 +NINJA_I-int LTR Pao 3676 +NINJA_LTR LTR Pao 297 +NOF_FB DNA MULE-NOF 228 NOMAD_I-int LTR Gypsy 11614 +NOMAD_LTR LTR Gypsy 757 +NTS_DM Other Other 56043 +P-1_DY DNA P 13 +PLACW_DM DNA P 277 +POGO DNA TcMar-Pogo 2909 +POGON1 DNA TcMar-Pogo 641 +PROTOP DNA P 4775 +PROTOP_A DNA P 4465 +PROTOP_B DNA P 9371 +QUASIMODO_I-int LTR Gypsy 17910 QUASIMODO_LTR LTR Gypsy 1625 -TABOR_LTR LTR Gypsy 443 -Stalker2_LTR LTR Gypsy 790 -MICROPIA_LTR LTR Gypsy 460 -Gypsy9_I-int LTR Gypsy 429 -STALKER4_I-int LTR Gypsy 7287 -TRANSIB1 DNA CMC-Transib 1229 -DOC LINE Jockey 29082 -TRANSIB3 DNA CMC-Transib 1802 -Copia_I-int LTR Copia 50888 -TRANSIB4 DNA CMC-Transib 364 -Gypsy10_LTR LTR Gypsy 363 -Invader3_I-int LTR Gypsy 4411 -Invader1_I-int LTR Gypsy 2993 -BS3_DM LINE Jockey 851 -Gypsy2-LTR_DM LTR Gypsy 1155 -LSU-rRNA_Hsa rRNA rRNA 15 -NOMAD_LTR LTR Gypsy 757 -Helitron1_DM RC Helitron 0 -LINEJ1_DM LINE Jockey 24891 -Invader4_LTR LTR Gypsy 1624 -MDG3_I-int LTR Gypsy 7857 -LmeSINE1c SINE tRNA-Deu-L2 627 +QUASIMODO2-I_DM LTR Gypsy 3977 +QUASIMODO2-LTR_DM LTR Gypsy 298 +R1_DM LINE R1 15424 +R1-2_DM LINE R1 184 +R2_DM LINE R2 54042 +ROO_I-int LTR Pao 34023 +ROO_LTR LTR Pao 2219 +ROOA_I-int LTR Pao 4103 +ROOA_LTR LTR Pao 435 +ROVER-I_DM LTR Gypsy 6947 ROVER-LTR_DM LTR Gypsy 415 S_DM DNA TcMar-Tc1 4974 -Invader6_I-int LTR Gypsy 6566 -ROVER-I_DM LTR Gypsy 6947 -QUASIMODO_I-int LTR Gypsy 17910 -Chouto_I-int LTR Gypsy 1231 -NTS_DM Other Other 56043 -Gypsy3_LTR LTR Gypsy 681 +S2_DM DNA TcMar-Tc1 716 SSU-rRNA_Cel rRNA rRNA 3855 -MINOS DNA TcMar-Tc1 273 -DOC4_DM LINE Jockey 1030 -ZAM_LTR LTR Gypsy 377 -QUASIMODO2-LTR_DM LTR Gypsy 298 -Gypsy2-I_DM LTR Gypsy 7374 -TRANSPAC_I-int LTR Gypsy 28474 -Bica_I-int LTR Gypsy 1561 -BS2 LINE Jockey 5214 -BLOOD_I-int LTR Gypsy 27362 -DMCR1A LINE CR1 17489 -QUASIMODO2-I_DM LTR Gypsy 3977 -HMSBEAGLE_I-int LTR Gypsy 7863 -DMLTR5 LTR Gypsy 189 -Gypsy7_LTR LTR Gypsy 80 -G5A_DM LINE Jockey 1578 -MDG1_I-int LTR Gypsy 16306 -Gypsy2_I-int LTR Gypsy 4226 -BARI1 DNA TcMar-Tc1 370 -Invader5_LTR LTR Gypsy 47 -DM176_LTR LTR Gypsy 560 -DOC3_DM LINE Jockey 11067 -Copia1-LTR_DM LTR Copia 600 -TOM_I-int LTR Gypsy 6929 -NOF_FB DNA MULE-NOF 228 -Chimpo_I-int LTR Gypsy 1366 -DIVER_I-int LTR Pao 24742 +SSU-rRNA_Dme rRNA rRNA 9958 +SSU-rRNA_Hsa rRNA rRNA 563673 +Stalker2_I-int LTR Gypsy 10966 +Stalker2_LTR LTR Gypsy 790 +Stalker3_LTR LTR Gypsy 543 +STALKER4_I-int LTR Gypsy 7287 +STALKER4_LTR LTR Gypsy 2040 +TABOR_I-int LTR Gypsy 5504 +TABOR_LTR LTR Gypsy 443 +TAHRE LINE Jockey 3806 +TART_B1 LINE Jockey 13382 +TART-A LINE Jockey 5092 +TC1_DM DNA TcMar-Tc1 2618 +TC1-2_DM DNA TcMar-Tc1 4438 TIRANT_I-int LTR Gypsy 23165 -Gypsy2_LTR LTR Gypsy 869 -FB4_DM DNA TcMar-Tc1 7840 -GTWIN_LTR LTR Gypsy 2533 -Invader6_LTR LTR Gypsy 312 -Gypsy8_I-int LTR Gypsy 4176 -G_DM LINE Jockey 10948 -TRANSPAC_LTR LTR Gypsy 1457 -FUSHI_DM Unknown Unknown 0 +TIRANT_LTR LTR Gypsy 3225 +TLD2 LTR Gypsy 33 +TOM_I-int LTR Gypsy 6929 +Transib-N1_DM DNA CMC-Transib 366 +TRANSIB1 DNA CMC-Transib 1229 +TRANSIB2 DNA CMC-Transib 3357 +TRANSIB3 DNA CMC-Transib 1802 +TRANSIB4 DNA CMC-Transib 364 Transib5 DNA CMC-Transib 973 -MuDR-1_DEl DNA MULE-NOF 32 -Mariner2_DM DNA TcMar-Tc1 1096 -DOC5_DM LINE Jockey 1793 -TC1_DM DNA TcMar-Tc1 2618 -Gypsy9_LTR LTR Gypsy 62 -DMRP1 Unknown Unknown 295 -Gypsy10_I-int LTR Gypsy 2236 -Gypsy4_LTR LTR Gypsy 390 -DM297_LTR LTR Gypsy 6128 -ACCORD2_I-int LTR Gypsy 2286 -Invader1_LTR LTR Gypsy 2525 -BEL_LTR LTR Pao 927 -IVK_DM LINE I 3025 -M4DM DNA CMC-Transib 1880 -FW2_DM LINE Jockey 17723 -Copia2_I-int LTR Copia 3614 -MDG1_LTR LTR Gypsy 650 -Gypsy12_LTR LTR Gypsy 7572 -Gypsy7_I-int LTR Gypsy 1162 -FROGGER_I-int LTR Copia 1075 -Gypsy_I-int LTR Gypsy 24082 -5S_DM RNA RNA 6331 -GTWIN_I-int LTR Gypsy 7568 -CIRCE LTR Gypsy 3676 -DIVER2_LTR LTR Pao 648 -POGO DNA TcMar-Pogo 2909 -Gypsy6A_LTR LTR Gypsy 793 -MAX_I-int LTR Pao 8914 -ROOA_LTR LTR Pao 435 -DM176_I-int LTR Gypsy 4726 -Copia2_LTR_DM LTR Copia 747 -DM297_I-int LTR Gypsy 82387 -IDEFIX_I-int LTR Gypsy 7222 -Jockey2 LINE Jockey 1823 -TC1-2_DM DNA TcMar-Tc1 4438 -DMRPR Unknown Unknown 221 +TRANSPAC_I-int LTR Gypsy 28474 +TRANSPAC_LTR LTR Gypsy 1457 +XDMR Unknown Unknown 1771 +XDMR_DM Unknown Unknown 4049 +ZAM_I-int LTR Gypsy 6896 +ZAM_LTR LTR Gypsy 377