diff test-data/chrY_single_fraction_counts.tab @ 13:530626b0757c draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit df6b9491ad06e8a85e67c663b68db3cce3eb0115
author artbio
date Tue, 02 Apr 2024 21:16:37 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/chrY_single_fraction_counts.tab	Tue Apr 02 21:16:37 2024 +0000
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+A-rich	Low_complexity	Low_complexity	0.0
+ACCORD2_I-int	LTR	Gypsy	0.0
+ACCORD2_LTR	LTR	Gypsy	0.0
+ACCORD_I-int	LTR	Gypsy	0.0
+BARI1	DNA	TcMar-Tc1	0.0
+BATUMI_LTR	LTR	Pao	0.0
+BS	LINE	Jockey	0.0
+BS2	LINE	Jockey	29.0
+BURDOCK_I-int	LTR	Gypsy	0.0
+Baggins1	LINE	LOA	0.0
+Bica_I-int	LTR	Gypsy	25.0
+Bica_LTR	LTR	Gypsy	0.0
+CIRCE	LTR	Gypsy	0.0
+Chouto_I-int	LTR	Gypsy	2.0
+Copia1-I_DM	LTR	Copia	0.0
+Copia_I-int	LTR	Copia	12327.0
+Copia_LTR	LTR	Copia	123.0
+DIVER2_I-int	LTR	Pao	1.0
+DIVER2_LTR	LTR	Pao	1.0
+DM1731_I-int	LTR	Copia	3.0
+DM1731_LTR	LTR	Copia	0.0
+DM176_I-int	LTR	Gypsy	0.0
+DM412	LTR	Gypsy	8.0
+DM412B_LTR	LTR	Gypsy	0.0
+DMCR1A	LINE	CR1	2.0
+DMLTR5	LTR	Gypsy	0.0
+DMRT1A	LINE	R1	0.0
+DMRT1B	LINE	R1	68.0
+DMRT1C	LINE	R1	0.0
+DNAREP1_DM	RC	Helitron	0.0
+DOC2_DM	LINE	Jockey	0.0
+DOC3_DM	LINE	Jockey	0.0
+FB4_DM	DNA	TcMar-Tc1	12.0
+FROGGER_I-int	LTR	Copia	0.0
+FW2_DM	LINE	Jockey	0.0
+G3_DM	LINE	Jockey	0.0
+G5A_DM	LINE	Jockey	0.0
+G5_DM	LINE	Jockey	0.0
+G6_DM	LINE	Jockey	0.0
+GA-rich	Low_complexity	Low_complexity	0.0
+GTWIN_I-int	LTR	Gypsy	8.0
+G_DM	LINE	Jockey	0.0
+Gypsy11_I-int	LTR	Gypsy	0.0
+Gypsy11_LTR	LTR	Gypsy	0.0
+Gypsy12_LTR	LTR	Gypsy	0.0
+Gypsy2-I_DM	LTR	Gypsy	3.0
+Gypsy2-LTR_DM	LTR	Gypsy	0.0
+Gypsy3_LTR	LTR	Gypsy	0.0
+Gypsy4_I-int	LTR	Gypsy	0.0
+Gypsy5_I-int	LTR	Gypsy	0.0
+Gypsy6A_LTR	LTR	Gypsy	0.0
+Gypsy6_I-int	LTR	Gypsy	16.0
+Gypsy8_I-int	LTR	Gypsy	0.0
+Gypsy8_LTR	LTR	Gypsy	0.0
+Gypsy9_I-int	LTR	Gypsy	0.0
+Gypsy_I-int	LTR	Gypsy	16.0
+Gypsy_LTR	LTR	Gypsy	0.0
+HELENA_RT	LINE	Jockey	0.0
+HETA	LINE	Jockey	12.0
+HMSBEAGLE_I-int	LTR	Gypsy	1.0
+IDEFIX_I-int	LTR	Gypsy	3.0
+IDEFIX_LTR	LTR	Gypsy	1.0
+Invader1_I-int	LTR	Gypsy	0.0
+Invader1_LTR	LTR	Gypsy	0.0
+Invader2_I-int	LTR	Gypsy	0.0
+Invader4_I-int	LTR	Gypsy	0.0
+Invader4_LTR	LTR	Gypsy	0.0
+Invader5_I-int	LTR	Gypsy	0.0
+Invader5_LTR	LTR	Gypsy	0.0
+Invader6_I-int	LTR	Gypsy	0.0
+Invader6_LTR	LTR	Gypsy	0.0
+MAX_I-int	LTR	Pao	24.0
+MAX_LTR	LTR	Pao	1.0
+MDG1_I-int	LTR	Gypsy	0.0
+MDG1_LTR	LTR	Gypsy	0.0
+MDG3_I-int	LTR	Gypsy	67.0
+MDG3_LTR	LTR	Gypsy	2.0
+MICROPIA_I-int	LTR	Gypsy	45.0
+MICROPIA_LTR	LTR	Gypsy	2.0
+Mariner2_DM	DNA	TcMar-Tc1	0.0
+NINJA_I-int	LTR	Pao	0.0
+NOMAD_I-int	LTR	Gypsy	0.0
+PROTOP_A	DNA	P	27.0
+PROTOP_B	DNA	P	0.0
+QUASIMODO2-I_DM	LTR	Gypsy	19.0
+QUASIMODO2-LTR_DM	LTR	Gypsy	0.0
+QUASIMODO_I-int	LTR	Gypsy	94.0
+QUASIMODO_LTR	LTR	Gypsy	15.0
+R1_DM	LINE	R1	0.0
+ROOA_I-int	LTR	Pao	0.0
+ROOA_LTR	LTR	Pao	0.0
+ROVER-I_DM	LTR	Gypsy	203.0
+ROVER-LTR_DM	LTR	Gypsy	3.0
+S2_DM	DNA	TcMar-Tc1	0.0
+STALKER4_I-int	LTR	Gypsy	106.0
+STALKER4_LTR	LTR	Gypsy	22.0
+S_DM	DNA	TcMar-Tc1	21.0
+Stalker2_I-int	LTR	Gypsy	38.0
+Stalker2_LTR	LTR	Gypsy	2.0
+TART-A	LINE	Jockey	2.0
+TART_B1	LINE	Jockey	8.0
+TC1-2_DM	DNA	TcMar-Tc1	0.0
+TC1_DM	DNA	TcMar-Tc1	0.0
+TLD2	LTR	Gypsy	0.0
+TRANSIB1	DNA	CMC-Transib	0.0
+TRANSIB2	DNA	CMC-Transib	12.0
+ZAM_I-int	LTR	Gypsy	0.0
+_AACACA_n	Simple_repeat	Simple_repeat	0.0
+_AAT_n	Simple_repeat	Simple_repeat	0.0
+_ACAATAG_n	Simple_repeat	Simple_repeat	0.0
+_ACC_n	Simple_repeat	Simple_repeat	0.0
+_AGAGAAG_n	Simple_repeat	Simple_repeat	2.5
+_AGAGA_n	Simple_repeat	Simple_repeat	41.5
+_ATAAT_n	Simple_repeat	Simple_repeat	0.0
+_ATATATT_n	Simple_repeat	Simple_repeat	0.0
+_ATATTAT_n	Simple_repeat	Simple_repeat	0.0
+_ATTTTT_n	Simple_repeat	Simple_repeat	0.0
+_ATT_n	Simple_repeat	Simple_repeat	0.0
+_AT_n	Simple_repeat	Simple_repeat	0.0
+_A_n	Simple_repeat	Simple_repeat	0.0
+_CATA_n	Simple_repeat	Simple_repeat	0.0
+_CTTTT_n	Simple_repeat	Simple_repeat	0.0
+_GAGAA_n	Simple_repeat	Simple_repeat	44.0
+_GCCTTT_n	Simple_repeat	Simple_repeat	1.0
+_TAATAT_n	Simple_repeat	Simple_repeat	0.0
+_TAATA_n	Simple_repeat	Simple_repeat	0.0
+_TATAAAA_n	Simple_repeat	Simple_repeat	0.0
+_TATAA_n	Simple_repeat	Simple_repeat	0.0
+_TATCATG_n	Simple_repeat	Simple_repeat	0.0
+_TA_n	Simple_repeat	Simple_repeat	0.0
+_TGTTG_n	Simple_repeat	Simple_repeat	0.0
+_TTATATA_n	Simple_repeat	Simple_repeat	0.0
+_TTATAT_n	Simple_repeat	Simple_repeat	0.0
+_TTATA_n	Simple_repeat	Simple_repeat	0.0
+_TTA_n	Simple_repeat	Simple_repeat	0.0
+_TTCTT_n	Simple_repeat	Simple_repeat	0.0
+_TTC_n	Simple_repeat	Simple_repeat	0.0
+_TTTAT_n	Simple_repeat	Simple_repeat	0.0
+_TTTA_n	Simple_repeat	Simple_repeat	0.0
+_TTTC_n	Simple_repeat	Simple_repeat	0.0
+_TTTGA_n	Simple_repeat	Simple_repeat	0.0
+_TTTTAG_n	Simple_repeat	Simple_repeat	0.0
+_TTTTCTT_n	Simple_repeat	Simple_repeat	0.0
+_TTTTC_n	Simple_repeat	Simple_repeat	0.0
+_T_n	Simple_repeat	Simple_repeat	0.0