Mercurial > repos > artbio > repenrich

diff edger-repenrich.xml @ 11:6bba3e33c2e7 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 11df9f0b68d35d3a9424a17e4cefee6cfb9d4c19
author artbio
date Sat, 09 Mar 2024 22:32:46 +0000
parents 6f4143893463
children 530626b0757c
line wrap: on
line diff
--- a/edger-repenrich.xml	Tue Feb 05 17:20:55 2019 -0500
+++ b/edger-repenrich.xml	Sat Mar 09 22:32:46 2024 +0000
@@ -1,11 +1,9 @@
-<tool id="edger-repenrich" name="edgeR-repenrich" version="1.5.2">
+<tool id="edger-repenrich" name="edgeR-repenrich" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Determines differentially expressed features from RepEnrich counts</description>
-    <requirements>
-        <requirement type="package" version="3.16.5">bioconductor-edger</requirement>
-        <requirement type="package" version="3.30.13">bioconductor-limma</requirement>
-        <requirement type="package" version="1.20.0">r-getopt</requirement>
-        <requirement type="package" version="0.2.15">r-rjson</requirement>
-    </requirements>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
     <stdio>
         <regex match="Execution halted"
            source="both"
@@ -109,7 +107,7 @@
         </data>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="3">
             <param name="factorName" value="Genotype"/>
             <param name="factorLevel_A" value="Mutant"/>
             <param name="countsFiles_A" value="355_fraction_counts.tab,356_fraction_counts.tab"/>