Mercurial > repos > artbio > repenrich

diff repenrich.xml @ 15:2e3d976e7d5d draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 03183e29f807ec33548016a7c4144f52720b7b9e
author artbio
date Sun, 21 Apr 2024 09:44:51 +0000
parents 530626b0757c
children
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--- a/repenrich.xml	Sat Apr 20 12:13:52 2024 +0000
+++ b/repenrich.xml	Sun Apr 21 09:44:51 2024 +0000
@@ -34,7 +34,7 @@
             #end if
         #end if
         ln -f -s '$genome' 'genome.fa' &&
-        bowtie-build '$genome' genome &&
+        bowtie-build --threads \${GALAXY_SLOTS:-1} '$genome' genome &&
         python $__tool_directory__/RepEnrich_setup.py
             --annotation_file '$repeatmasker'
             --genomefasta 'genome.fa'