view test-data/354_fraction_counts.tab @ 14:bf866bedd4b4 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 205141a3f695f202d5c3e01e6ab3b2b869fe62b5
author artbio
date Sat, 20 Apr 2024 12:13:52 +0000
parents 15e3e29f310e
children
line wrap: on
line source

5S_DM	RNA	RNA	6317
ACCORD_I-int	LTR	Gypsy	2723
ACCORD_LTR	LTR	Gypsy	295
ACCORD2_I-int	LTR	Gypsy	2934
ACCORD2_LTR	LTR	Gypsy	235
ALA_DM	Unknown	Unknown	5
ARS406_DM	Unknown	Unknown	563
Baggins1	LINE	LOA	5136
BARI_DM	DNA	TcMar-Tc1	990
BARI1	DNA	TcMar-Tc1	395
BATUMI_I-int	LTR	Pao	6395
BATUMI_LTR	LTR	Pao	554
BEL_I-int	LTR	Pao	23757
BEL_LTR	LTR	Pao	875
Bica_I-int	LTR	Gypsy	1852
Bica_LTR	LTR	Gypsy	140
BLASTOPIA_I-int	LTR	Gypsy	10309
BLASTOPIA_LTR	LTR	Gypsy	550
BLOOD_I-int	LTR	Gypsy	22330
BLOOD_LTR	LTR	Gypsy	748
BS	LINE	Jockey	7296
BS2	LINE	Jockey	5595
BS3_DM	LINE	Jockey	1252
BS4_DM	LINE	Jockey	34
BURDOCK_I-int	LTR	Gypsy	3119
BURDOCK_LTR	LTR	Gypsy	287
Chimpo_I-int	LTR	Gypsy	1288
Chimpo_LTR	LTR	Gypsy	94
Chouto_I-int	LTR	Gypsy	1690
Chouto_LTR	LTR	Gypsy	299
CIRCE	LTR	Gypsy	3767
Copia_I-int	LTR	Copia	27612
Copia_LTR	LTR	Copia	1408
Copia1-I_DM	LTR	Copia	3588
Copia1-LTR_DM	LTR	Copia	771
Copia2_I-int	LTR	Copia	4218
Copia2_LTR_DM	LTR	Copia	891
DIVER_I-int	LTR	Pao	13178
DIVER_LTR	LTR	Pao	469
DIVER2_I-int	LTR	Pao	6679
DIVER2_LTR	LTR	Pao	793
DM1731_I-int	LTR	Copia	5180
DM1731_LTR	LTR	Copia	577
DM176_I-int	LTR	Gypsy	3627
DM176_LTR	LTR	Gypsy	899
DM297_I-int	LTR	Gypsy	11837
DM297_LTR	LTR	Gypsy	1489
DM412	LTR	Gypsy	24086
DM412B_LTR	LTR	Gypsy	3078
DMCR1A	LINE	CR1	20380
DMLTR5	LTR	Gypsy	161
DMRP1	Unknown	Unknown	262
DMRPR	Unknown	Unknown	128
DMRT1A	LINE	R1	4456
DMRT1B	LINE	R1	9706
DMRT1C	LINE	R1	2530
DMTOM1_LTR	LTR	Gypsy	1004
DNAREP1_DM	RC	Helitron	67821
DOC	LINE	Jockey	17883
DOC2_DM	LINE	Jockey	4438
DOC3_DM	LINE	Jockey	11941
DOC4_DM	LINE	Jockey	813
DOC5_DM	LINE	Jockey	3037
DOC6_DM	LINE	Jockey	1259
FB4_DM	DNA	TcMar-Tc1	7149
FROGGER_I-int	LTR	Copia	1611
FROGGER_LTR	LTR	Copia	41
FTZ_DM	Unknown	Unknown	0
FUSHI_DM	Unknown	Unknown	0
FW2_DM	LINE	Jockey	14234
FW3_DM	LINE	Jockey	831
G_DM	LINE	Jockey	8905
G2_DM	LINE	Jockey	1328
G3_DM	LINE	Jockey	797
G4_DM	LINE	Jockey	3668
G5_DM	LINE	Jockey	2601
G5A_DM	LINE	Jockey	1804
G6_DM	LINE	Jockey	4827
G7_DM	LINE	Jockey	162
GTWIN_I-int	LTR	Gypsy	5448
GTWIN_LTR	LTR	Gypsy	598
Gypsy_I-int	LTR	Gypsy	6822
Gypsy_LTR	LTR	Gypsy	1306
Gypsy1-I_DM	LTR	Gypsy	8160
Gypsy1-LTR_DM	LTR	Gypsy	1042
Gypsy10_I-int	LTR	Gypsy	2258
Gypsy10_LTR	LTR	Gypsy	314
Gypsy11_I-int	LTR	Gypsy	671
Gypsy11_LTR	LTR	Gypsy	134
Gypsy12_I-int	LTR	Gypsy	9778
Gypsy12_LTR	LTR	Gypsy	6292
Gypsy12A_LTR	LTR	Gypsy	3059
Gypsy2_I-int	LTR	Gypsy	3190
Gypsy2_LTR	LTR	Gypsy	479
Gypsy2-I_DM	LTR	Gypsy	4606
Gypsy2-LTR_DM	LTR	Gypsy	966
Gypsy3_I-int	LTR	Gypsy	3399
Gypsy3_LTR	LTR	Gypsy	566
Gypsy4_I-int	LTR	Gypsy	12113
Gypsy4_LTR	LTR	Gypsy	274
Gypsy5_I-int	LTR	Gypsy	2448
Gypsy5_LTR	LTR	Gypsy	651
Gypsy6_I-int	LTR	Gypsy	7489
Gypsy6_LTR	LTR	Gypsy	428
Gypsy6A_LTR	LTR	Gypsy	617
Gypsy7_I-int	LTR	Gypsy	1256
Gypsy7_LTR	LTR	Gypsy	112
Gypsy8_I-int	LTR	Gypsy	4809
Gypsy8_LTR	LTR	Gypsy	1311
Gypsy9_I-int	LTR	Gypsy	504
Gypsy9_LTR	LTR	Gypsy	51
HELENA_RT	LINE	Jockey	653
Helitron1_DM	RC	Helitron	3
HETA	LINE	Jockey	23025
HMSBEAGLE_I-int	LTR	Gypsy	7239
HOBO	DNA	hAT-hobo	5031
I_DM	LINE	I	7987
IDEFIX_I-int	LTR	Gypsy	6193
IDEFIX_LTR	LTR	Gypsy	2191
Invader1_I-int	LTR	Gypsy	1832
Invader1_LTR	LTR	Gypsy	3346
Invader2_I-int	LTR	Gypsy	6823
Invader2_LTR	LTR	Gypsy	492
Invader3_I-int	LTR	Gypsy	4667
Invader3_LTR	LTR	Gypsy	657
Invader4_I-int	LTR	Gypsy	1439
Invader4_LTR	LTR	Gypsy	1420
Invader5_I-int	LTR	Gypsy	416
Invader5_LTR	LTR	Gypsy	69
Invader6_I-int	LTR	Gypsy	6931
Invader6_LTR	LTR	Gypsy	649
IVK_DM	LINE	I	3349
Jockey2	LINE	Jockey	1770
LINEJ1_DM	LINE	Jockey	7025
LmeSINE1c	SINE	tRNA-Deu-L2	599
LOOPER1_DM	DNA	PiggyBac	821
LSU-rRNA_Cel	rRNA	rRNA	520168
LSU-rRNA_Dme	rRNA	rRNA	3659329
LSU-rRNA_Hsa	rRNA	rRNA	5
M4DM	DNA	CMC-Transib	1727
Mariner2_DM	DNA	TcMar-Tc1	2011
MAX_I-int	LTR	Pao	12395
MAX_LTR	LTR	Pao	1017
MDG1_I-int	LTR	Gypsy	16315
MDG1_LTR	LTR	Gypsy	690
MDG3_I-int	LTR	Gypsy	5392
MDG3_LTR	LTR	Gypsy	1037
MICROPIA_I-int	LTR	Gypsy	10149
MICROPIA_LTR	LTR	Gypsy	797
MINOS	DNA	TcMar-Tc1	173
MuDR-1_DEl	DNA	MULE-NOF	6
NINJA_I-int	LTR	Pao	5274
NINJA_LTR	LTR	Pao	491
NOF_FB	DNA	MULE-NOF	1272
NOMAD_I-int	LTR	Gypsy	16469
NOMAD_LTR	LTR	Gypsy	619
NTS_DM	Other	Other	65954
P-1_DY	DNA	P	8
PLACW_DM	DNA	P	149
POGO	DNA	TcMar-Pogo	2427
POGON1	DNA	TcMar-Pogo	331
PROTOP	DNA	P	4942
PROTOP_A	DNA	P	3533
PROTOP_B	DNA	P	8690
QUASIMODO_I-int	LTR	Gypsy	14906
QUASIMODO_LTR	LTR	Gypsy	1332
QUASIMODO2-I_DM	LTR	Gypsy	2717
QUASIMODO2-LTR_DM	LTR	Gypsy	313
R1_DM	LINE	R1	7343
R1-2_DM	LINE	R1	267
R2_DM	LINE	R2	15327
ROO_I-int	LTR	Pao	31793
ROO_LTR	LTR	Pao	1639
ROOA_I-int	LTR	Pao	4985
ROOA_LTR	LTR	Pao	400
ROVER-I_DM	LTR	Gypsy	6513
ROVER-LTR_DM	LTR	Gypsy	564
S_DM	DNA	TcMar-Tc1	3612
S2_DM	DNA	TcMar-Tc1	765
SSU-rRNA_Cel	rRNA	rRNA	3463
SSU-rRNA_Dme	rRNA	rRNA	7113
SSU-rRNA_Hsa	rRNA	rRNA	318045
Stalker2_I-int	LTR	Gypsy	12252
Stalker2_LTR	LTR	Gypsy	726
Stalker3_LTR	LTR	Gypsy	593
STALKER4_I-int	LTR	Gypsy	6207
STALKER4_LTR	LTR	Gypsy	1292
TABOR_I-int	LTR	Gypsy	3947
TABOR_LTR	LTR	Gypsy	384
TAHRE	LINE	Jockey	4560
TART_B1	LINE	Jockey	25248
TART-A	LINE	Jockey	3697
TC1_DM	DNA	TcMar-Tc1	1840
TC1-2_DM	DNA	TcMar-Tc1	3807
TIRANT_I-int	LTR	Gypsy	10917
TIRANT_LTR	LTR	Gypsy	1371
TLD2	LTR	Gypsy	65
TOM_I-int	LTR	Gypsy	2563
Transib-N1_DM	DNA	CMC-Transib	308
TRANSIB1	DNA	CMC-Transib	2082
TRANSIB2	DNA	CMC-Transib	3197
TRANSIB3	DNA	CMC-Transib	1184
TRANSIB4	DNA	CMC-Transib	635
Transib5	DNA	CMC-Transib	1123
TRANSPAC_I-int	LTR	Gypsy	9674
TRANSPAC_LTR	LTR	Gypsy	538
XDMR	Unknown	Unknown	1249
XDMR_DM	Unknown	Unknown	3317
ZAM_I-int	LTR	Gypsy	5129
ZAM_LTR	LTR	Gypsy	259