Mercurial > repos > artbio > repenrich
view test-data/chrY-1-500k.fa.out @ 14:bf866bedd4b4 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 205141a3f695f202d5c3e01e6ab3b2b869fe62b5
| author | artbio |
|---|---|
| date | Sat, 20 Apr 2024 12:13:52 +0000 |
| parents | 530626b0757c |
| children |
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192 10.4 9.8 2.2 chrY 1 256 (3667096) + TART_B1 LINE/Jockey 590 864 (9790) 120772 88 11.5 9.7 3.3 chrY 270 413 (3666939) + TART_B1 LINE/Jockey 712 864 (9790) 120772 631 14.8 8.1 4.6 chrY 426 1187 (3666165) + TART_B1 LINE/Jockey 9741 10528 (126) 120773 286 3.3 0.0 0.0 chrY 1192 1490 (3665862) + TART-A LINE/Jockey 9873 10171 (5405) 120774 448 7.4 0.0 0.5 chrY 8991 9409 (3657943) + HETA LINE/Jockey 5661 6077 (4) 120775 7 12.2 0.0 0.0 chrY 9408 9448 (3657904) C DNAREP1_DM RC/Helitron (217) 377 337 120776 38 19.9 15.5 1.8 chrY 9447 9543 (3657809) C DNAREP1_DM RC/Helitron (340) 254 145 120776 19 5.9 0.0 0.0 chrY 9560 9593 (3657759) C DNAREP1_DM RC/Helitron (551) 43 10 120777 167 19.0 32.1 0.7 chrY 10936 11253 (3656099) C DNAREP1_DM RC/Helitron (0) 594 178 120778 523 2.1 0.0 0.0 chrY 11410 11833 (3655519) + PROTOP_A DNA/P 1 424 (681) 120779 312 2.5 0.0 0.0 chrY 11821 12098 (3655254) C PROTOP_A DNA/P (645) 460 183 120780 15 18.1 2.6 0.0 chrY 12233 12270 (3655082) + (GCCTTT)n Simple_repeat 1 39 (0) 120781 14 26.9 1.5 4.5 chrY 12814 12881 (3654471) + A-rich Low_complexity 1 66 (0) 120782 229 30.4 3.5 9.6 chrY 13410 14042 (3653310) + Chouto_I-int LTR/Gypsy 854 1370 (4345) 120783 15 18.1 2.6 0.0 chrY 14385 14422 (3652930) + (GCCTTT)n Simple_repeat 1 39 (0) 120784 339 2.7 0.9 0.0 chrY 14819 15147 (3652205) C TC1-2_DM DNA/TcMar-Tc1 (0) 1644 1313 120785 182 25.8 2.3 4.7 chrY 15489 15748 (3651604) + Chouto_I-int LTR/Gypsy 1117 1370 (4345) 120786 316 2.2 0.0 0.0 chrY 16562 16839 (3650513) C PROTOP_A DNA/P (645) 460 183 120787 15 18.1 2.6 0.0 chrY 16974 17011 (3650341) + (GCCTTT)n Simple_repeat 1 39 (0) 120788 14 28.5 1.5 3.0 chrY 17555 17621 (3649731) + A-rich Low_complexity 1 66 (0) 120789 13 28.9 5.2 1.2 chrY 17622 17627 (3649725) + (AACACA)n Simple_repeat 5 80 (0) 120790 357 26.2 5.4 5.4 chrY 18175 18691 (3648661) + Chouto_I-int LTR/Gypsy 854 1370 (4345) 120791 717 34.9 4.9 4.8 chrY 19620 21544 (3645808) + GTWIN_I-int LTR/Gypsy 2720 4645 (1776) 120792 404 2.8 0.7 0.2 chrY 22648 23056 (3644296) + (TAATA)n Simple_repeat 1 411 (0) 120793 293 8.9 0.0 0.4 chrY 23057 23338 (3644014) C Baggins1 LINE/LOA (69) 5384 5104 120794 855 5.7 5.7 0.0 chrY 23356 24131 (3643221) C Baggins1 LINE/LOA (730) 4723 3904 120794 41 12.2 57.0 0.0 chrY 24134 24240 (3643112) C Baggins1 LINE/LOA (1656) 3797 3630 120794 87 17.3 24.9 0.0 chrY 25318 25490 (3641862) + DOC3_DM LINE/Jockey 4195 4410 (330) 120795 14 14.5 3.2 0.0 chrY 25604 25634 (3641718) + (TTC)n Simple_repeat 1 32 (0) 120796 232 12.5 34.0 0.9 chrY 25758 26095 (3641257) C DNAREP1_DM RC/Helitron (134) 460 12 120797 34 14.3 0.0 0.0 chrY 29452 29507 (3637845) C DNAREP1_DM RC/Helitron (0) 594 539 120798 39 14.7 0.0 0.0 chrY 29529 29596 (3637756) C DNAREP1_DM RC/Helitron (176) 418 351 120798 76 23.2 5.8 14.7 chrY 29598 29804 (3637548) C Gypsy8_LTR LTR/Gypsy (113) 191 1 120799 58 22.3 4.9 1.6 chrY 29805 29918 (3637434) C DNAREP1_DM RC/Helitron (236) 358 241 120798 1970 2.5 4.1 0.1 chrY 30007 31675 (3635677) + S_DM DNA/TcMar-Tc1 1 1736 (0) 120800 37 18.0 0.0 0.0 chrY 31701 31761 (3635591) C DNAREP1_DM RC/Helitron (427) 167 107 120798 148 13.6 21.6 0.2 chrY 31786 32131 (3635221) + DNAREP1_DM RC/Helitron 276 592 (2) 120801 48 25.7 8.3 0.7 chrY 32132 32264 (3635088) + PROTOP_B DNA/P 846 988 (165) 120802 52 20.7 33.9 0.7 chrY 32428 32539 (3634813) + Gypsy8_LTR LTR/Gypsy 2 150 (154) 120803 19 22.2 0.0 12.6 chrY 32733 32830 (3634522) + R1_DM LINE/R1 2449 2535 (2821) 120804 19 18.9 0.0 0.0 chrY 32829 32881 (3634471) + R1_DM LINE/R1 3024 3076 (2280) 120804 1006 9.8 15.8 0.0 chrY 32895 34029 (3633323) + DMRT1A LINE/R1 1550 2863 (2320) 120805 389 5.3 5.3 0.0 chrY 34025 34383 (3632969) C ROOA_LTR LTR/Pao (8) 378 1 120806 955 8.4 7.5 0.4 chrY 34387 35386 (3631966) C ROOA_I-int LTR/Pao (2141) 6115 4397 120807 1198 4.8 14.0 0.0 chrY 35395 36531 (3630821) C ROOA_I-int LTR/Pao (2763) 4086 2791 120807 1 0.0 3.0 0.0 chrY 36530 36562 (3630790) C ROOA_I-int LTR/Pao (6814) 35 2 120807 26 5.0 0.0 0.0 chrY 36564 36603 (3630749) C ROOA_LTR LTR/Pao (0) 386 347 120807 13 12.8 5.6 2.7 chrY 36636 36671 (3630681) + (TTTGA)n Simple_repeat 1 37 (0) 120808 151 14.3 36.2 3.5 chrY 36861 37119 (3630233) C MDG1_LTR LTR/Gypsy (29) 413 71 120809 252 3.6 0.0 0.0 chrY 37122 37377 (3629975) + (TTA)n Simple_repeat 1 256 (0) 120810 27 7.2 1.8 1.8 chrY 37392 37455 (3629897) C MDG1_I-int LTR/Gypsy (0) 6596 6543 120811 265 12.2 1.7 6.7 chrY 37454 37751 (3629601) + Gypsy6A_LTR LTR/Gypsy 20 303 (117) 120812 13 14.6 4.8 2.3 chrY 37757 37798 (3629554) + Gypsy3_LTR LTR/Gypsy 353 395 (3) 120813 6456 14.1 2.6 1.5 chrY 37869 44315 (3623037) + Gypsy6_I-int LTR/Gypsy 404 7011 (1) 120814 287 12.1 1.6 6.3 chrY 44319 44635 (3622717) + Gypsy6A_LTR LTR/Gypsy 1 303 (117) 120814 13 14.6 4.8 2.3 chrY 44641 44682 (3622670) + Gypsy3_LTR LTR/Gypsy 353 395 (3) 120815 50 5.1 6.0 1.1 chrY 44688 44770 (3622582) + (TA)n Simple_repeat 1 87 (0) 120816 14 17.1 0.0 4.9 chrY 44771 44845 (3622507) C MDG1_I-int LTR/Gypsy (57) 6539 6469 120817 35 15.9 5.1 1.2 chrY 44854 44932 (3622420) + (AT)n Simple_repeat 1 82 (0) 120818 326 5.5 39.0 0.5 chrY 44935 45411 (3621941) C MDG1_I-int LTR/Gypsy (57) 6539 5880 120817 500 4.8 7.5 0.1 chrY 45411 46080 (3621272) C MDG1_I-int LTR/Gypsy (942) 5654 4936 120817 802 11.8 10.3 0.8 chrY 46078 48270 (3619082) C MDG1_I-int LTR/Gypsy (2450) 4146 1651 120817 1597 3.4 7.3 0.1 chrY 48267 49596 (3617756) C DMCR1A LINE/CR1 (2779) 1691 267 120819 15 27.8 2.5 3.9 chrY 50287 50330 (3617022) + A-rich Low_complexity 1 76 (0) 120820 21 13.2 0.0 0.0 chrY 50331 50363 (3616989) + (A)n Simple_repeat 1 33 (0) 120821 348 28.7 4.3 5.7 chrY 50819 51425 (3615927) + GTWIN_I-int LTR/Gypsy 650 1373 (4342) 120822 902 27.7 4.1 3.2 chrY 52615 54140 (3613212) + GTWIN_I-int LTR/Gypsy 2319 3859 (1856) 120822 796 5.4 17.4 0.6 chrY 54268 55834 (3611518) C MDG1_I-int LTR/Gypsy (3117) 3479 1651 120823 1627 3.4 5.9 0.3 chrY 55831 57180 (3610172) C DMCR1A LINE/CR1 (2779) 1691 267 120824 15 23.7 0.0 0.0 chrY 58915 58954 (3608398) + A-rich Low_complexity 1 40 (0) 120825 1008 32.6 6.9 4.6 chrY 58976 61222 (3606130) + GTWIN_I-int LTR/Gypsy 2319 4614 (1807) 120826 2 40.4 0.0 0.0 chrY 61878 61971 (3605381) + GTWIN_I-int LTR/Gypsy 5384 5477 (811) 120826 15 18.1 2.6 0.0 chrY 62844 62881 (3604471) + (GCCTTT)n Simple_repeat 1 39 (0) 120827 114 2.2 0.0 3.6 chrY 63275 63416 (3603936) C DMCR1A LINE/CR1 (4191) 279 143 120828 4 18.9 0.0 0.0 chrY 63412 63464 (3603888) C MDG1_I-int LTR/Gypsy (5014) 1582 1530 120829 11 14.3 0.0 0.0 chrY 63466 63500 (3603852) C MDG1_I-int LTR/Gypsy (5968) 628 594 120829 219 14.0 10.6 0.8 chrY 63510 63739 (3603613) C MDG1_LTR LTR/Gypsy (103) 339 87 120830 119 5.5 1.3 1.3 chrY 63740 63894 (3603458) + (TTA)n Simple_repeat 1 155 (0) 120831 299 3.9 4.1 2.6 chrY 63901 64161 (3603191) C BATUMI_LTR LTR/Pao (0) 272 2 120832 83 3.6 0.0 0.0 chrY 64162 64247 (3603105) + (ATT)n Simple_repeat 1 86 (0) 120833 1807 12.4 8.8 1.5 chrY 64256 66725 (3600627) C Stalker2_I-int LTR/Gypsy (2036) 5360 2603 120834 75 6.2 0.0 0.0 chrY 66734 66813 (3600539) + DM1731_LTR LTR/Copia 29 108 (228) 120835 302 4.0 0.0 0.0 chrY 66811 67062 (3600290) + DM1731_LTR LTR/Copia 85 336 (0) 120835 76 7.4 3.7 0.0 chrY 67063 67143 (3600209) C Invader1_LTR LTR/Gypsy (4) 419 336 120836 155 5.3 1.9 6.5 chrY 67141 67302 (3600050) C Invader1_LTR LTR/Gypsy (259) 164 10 120836 423 7.3 6.2 0.4 chrY 67303 67741 (3599611) C Invader1_I-int LTR/Gypsy (0) 3186 2723 120836 15 6.3 2.4 10.5 chrY 67757 67800 (3599552) + (TTA)n Simple_repeat 1 40 (0) 120837 1962 26.2 5.1 5.6 chrY 68051 71412 (3595940) C MICROPIA_I-int LTR/Gypsy (499) 3977 386 120838 87 24.0 9.6 2.2 chrY 71416 71581 (3595771) C MICROPIA_I-int LTR/Gypsy (4273) 203 26 120838 70 34.3 5.1 0.4 chrY 71587 71884 (3595468) C Gypsy11_I-int LTR/Gypsy (5776) 733 538 120839 23 18.9 4.9 0.0 chrY 72296 72356 (3594996) + (TTTTC)n Simple_repeat 1 64 (0) 120840 35 12.8 1.3 4.1 chrY 72436 72441 (3594911) + (TTTTCTT)n Simple_repeat 1 72 (0) 120841 29 16.3 0.0 4.6 chrY 72442 72509 (3594843) + (CTTTT)n Simple_repeat 1 65 (0) 120842 13 18.8 4.5 2.2 chrY 72660 72703 (3594649) + (TTCTT)n Simple_repeat 1 45 (0) 120843 609 6.5 3.5 2.6 chrY 74455 75021 (3592331) C Gypsy11_I-int LTR/Gypsy (2059) 1465 894 120839 27 40.0 7.5 5.9 chrY 75016 75480 (3591872) C Gypsy11_I-int LTR/Gypsy (4596) 1913 1442 120844 90 38.3 13.1 1.7 chrY 75565 76142 (3591210) C Gypsy11_I-int LTR/Gypsy (5454) 1055 532 120844 23 18.9 4.9 0.0 chrY 76554 76614 (3590738) + (TTTTC)n Simple_repeat 1 64 (0) 120845 35 12.8 1.3 4.1 chrY 76694 76699 (3590653) + (TTTTCTT)n Simple_repeat 1 72 (0) 120846 29 16.3 0.0 4.6 chrY 76700 76767 (3590585) + (CTTTT)n Simple_repeat 1 65 (0) 120847 609 6.5 3.5 2.6 chrY 78692 79258 (3588094) C Gypsy11_I-int LTR/Gypsy (2059) 1465 894 120844 27 40.0 7.5 5.9 chrY 79253 79717 (3587635) C Gypsy5_I-int LTR/Gypsy (4596) 1913 1442 120848 90 38.3 13.1 1.7 chrY 79802 80379 (3586973) C Gypsy5_I-int LTR/Gypsy (5454) 1055 532 120848 23 18.9 4.9 0.0 chrY 80791 80851 (3586501) + (TTTTC)n Simple_repeat 1 64 (0) 120849 35 12.8 1.3 4.1 chrY 80931 80936 (3586416) + (TTTTCTT)n Simple_repeat 1 72 (0) 120850 29 16.3 0.0 4.6 chrY 80937 81004 (3586348) + (CTTTT)n Simple_repeat 1 65 (0) 120851 15 17.7 0.0 5.0 chrY 81155 81196 (3586156) + (TTCTT)n Simple_repeat 1 40 (0) 120852 47 40.4 1.1 4.5 chrY 87932 88115 (3579237) C Copia1-I_DM LTR/Copia (1481) 2643 2466 120853 94 10.2 20.4 0.0 chrY 88303 88449 (3578903) C Mariner2_DM DNA/TcMar-Tc1 (20) 892 716 120854 138 9.8 5.9 4.0 chrY 88450 88619 (3578733) C Mariner2_DM DNA/TcMar-Tc1 (313) 599 427 120854 622 10.4 14.1 5.2 chrY 89140 89849 (3577503) C Gypsy8_I-int LTR/Gypsy (1012) 3335 2566 120855 1332 9.7 12.2 0.0 chrY 89833 91082 (3576270) C DMRT1B LINE/R1 (6) 5177 3775 120856 2920 10.7 12.9 0.0 chrY 91078 93804 (3573548) C DMRT1B LINE/R1 (1620) 3563 486 120856 125 22.6 3.5 3.3 chrY 93803 94127 (3573225) C DMRT1B LINE/R1 (4839) 344 1 120856 227 12.5 11.5 0.6 chrY 94154 94458 (3572894) C Gypsy8_I-int LTR/Gypsy (1749) 2598 2261 120857 100 14.4 21.9 4.4 chrY 94994 95189 (3572163) C Gypsy8_I-int LTR/Gypsy (4118) 229 1 120857 150 15.1 11.6 8.8 chrY 95190 95397 (3571955) C Gypsy8_LTR LTR/Gypsy (90) 214 1 120858 7 28.6 0.0 0.0 chrY 95705 95746 (3571606) C NOMAD_I-int LTR/Gypsy (575) 5997 5956 120859 97 29.3 24.1 0.0 chrY 96177 96425 (3570927) C Gypsy4_I-int LTR/Gypsy (2878) 3410 3102 120860 49 14.3 19.8 0.0 chrY 96422 96512 (3570840) C TLD2 LTR/Gypsy (99) 119 11 120861 25 15.8 0.0 0.0 chrY 96613 96654 (3570698) + (T)n Simple_repeat 1 42 (0) 120862 61 35.8 3.1 6.9 chrY 97138 97332 (3570020) C Chouto_I-int LTR/Gypsy (4348) 1367 1180 120863 168 30.6 20.1 5.7 chrY 97509 97955 (3569397) C Chouto_I-int LTR/Gypsy (4368) 1347 840 120864 92 9.9 0.9 0.0 chrY 104060 104170 (3563182) + DNAREP1_DM RC/Helitron 483 594 (0) 120865 237 13.6 24.3 2.1 chrY 104327 104680 (3562672) + DNAREP1_DM RC/Helitron 91 521 (73) 120866 130 14.3 5.3 2.6 chrY 104882 105039 (3562313) C DM176_I-int LTR/Gypsy (2049) 4371 4209 120867 7 24.4 0.0 0.0 chrY 105040 105080 (3562272) + DNAREP1_DM RC/Helitron 1 41 (553) 120868 475 11.2 13.5 2.0 chrY 105569 106153 (3561199) + Gypsy6_I-int LTR/Gypsy 6359 7009 (3) 120869 451 7.3 2.9 0.0 chrY 106159 106566 (3560786) + Gypsy6A_LTR LTR/Gypsy 1 420 (0) 120869 1317 4.2 5.4 0.7 chrY 106701 108611 (3558741) + DMRT1B LINE/R1 3182 5183 (0) 120870 305 3.3 5.9 0.0 chrY 108617 108920 (3558432) C Invader4_I-int LTR/Gypsy (838) 1575 1254 120871 1148 5.9 5.5 0.4 chrY 108913 109884 (3557468) C Invader4_I-int LTR/Gypsy (1392) 1021 1 120871 117 7.0 0.0 0.0 chrY 109885 109998 (3557354) C Invader4_LTR LTR/Gypsy (0) 346 233 120871 12 4.3 8.3 0.0 chrY 110509 110532 (3556820) + (TGTTG)n Simple_repeat 1 26 (0) 120872 190 32.4 3.8 3.8 chrY 111034 111688 (3555664) C HMSBEAGLE_I-int LTR/Gypsy (755) 5774 5120 120873 227 36.6 2.6 1.4 chrY 111733 112660 (3554692) C HMSBEAGLE_I-int LTR/Gypsy (1577) 4952 4014 120873 638 33.0 4.6 5.2 chrY 112665 114714 (3552638) C HMSBEAGLE_I-int LTR/Gypsy (2734) 3795 1759 120873 116 8.1 0.0 0.0 chrY 115377 115495 (3551857) C STALKER4_LTR LTR/Gypsy (236) 166 48 120874 595 4.2 16.6 1.0 chrY 115496 116098 (3551254) + PROTOP_B DNA/P 1 696 (457) 120875 108 36.6 4.9 2.2 chrY 116324 117145 (3550207) C Gypsy2-I_DM LTR/Gypsy (507) 6038 5196 120876 197 32.4 3.8 3.2 chrY 117344 117994 (3549358) C HMSBEAGLE_I-int LTR/Gypsy (755) 5774 5120 120877 236 36.7 2.6 1.3 chrY 118039 118965 (3548387) C HMSBEAGLE_I-int LTR/Gypsy (1577) 4952 4014 120877 616 33.5 5.2 6.7 chrY 118970 121035 (3546317) C HMSBEAGLE_I-int LTR/Gypsy (2734) 3795 1759 120877 16 26.6 1.4 4.5 chrY 121317 121385 (3545967) + (TTATAT)n Simple_repeat 1 67 (0) 120878 30 19.5 0.0 8.1 chrY 121529 121552 (3545800) C STALKER4_LTR LTR/Gypsy (297) 105 87 120879 34 0.0 6.5 2.1 chrY 121553 121598 (3545754) + (TTA)n Simple_repeat 1 48 (0) 120880 30 19.5 0.0 8.1 chrY 121599 121636 (3545716) C STALKER4_LTR LTR/Gypsy (316) 86 49 120879 598 4.0 16.6 1.0 chrY 121637 122239 (3545113) + PROTOP_B DNA/P 1 696 (457) 120881 110 36.5 4.9 2.2 chrY 122465 123286 (3544066) C Gypsy2-I_DM LTR/Gypsy (507) 6038 5196 120882 189 31.6 4.4 1.6 chrY 123484 124048 (3543304) C HMSBEAGLE_I-int LTR/Gypsy (755) 5774 5194 120883 404 5.1 1.7 0.2 chrY 124210 124742 (3542610) + (GAGAA)n Simple_repeat 1 541 (0) 120884 111 32.7 0.0 1.0 chrY 124751 125056 (3542296) C DM1731_I-int LTR/Copia (2220) 1756 1454 120885 36 37.3 4.4 1.6 chrY 125115 125362 (3541990) C DM1731_I-int LTR/Copia (2880) 1096 842 120885 8 43.6 0.0 0.0 chrY 125497 125622 (3541730) C DM1731_I-int LTR/Copia (3522) 602 477 120885 50 7.8 3.9 0.0 chrY 125637 125738 (3541614) C S2_DM DNA/TcMar-Tc1 (105) 1630 1525 120886 99 3.1 3.0 1.5 chrY 125735 125866 (3541486) C S2_DM DNA/TcMar-Tc1 (1601) 134 1 120887 13 10.5 6.5 0.0 chrY 126117 126147 (3541205) + (ATTTTT)n Simple_repeat 1 33 (0) 120888 199 29.5 34.3 0.6 chrY 129235 130063 (3537289) + IDEFIX_I-int LTR/Gypsy 19 1124 (4504) 120889 315 15.3 8.4 18.6 chrY 130163 130804 (3536548) + Invader2_I-int LTR/Gypsy 37 623 (3969) 120890 15 13.5 3.0 0.0 chrY 131495 131527 (3535825) + A-rich Low_complexity 1 34 (0) 120891 208 36.7 17.1 3.1 chrY 131716 132452 (3534900) + ACCORD_I-int LTR/Gypsy 3885 5013 (1275) 120892 198 0.6 0.0 0.0 chrY 132454 132628 (3534724) + (AGAGAAG)n Simple_repeat 1 175 (0) 120893 528 0.2 0.0 0.5 chrY 132629 133054 (3534298) + Stalker2_LTR LTR/Gypsy 1 424 (0) 120894 1367 6.0 0.4 0.1 chrY 133061 134201 (3533151) + Stalker2_I-int LTR/Gypsy 1 1145 (6251) 120894 571 0.9 0.0 0.4 chrY 134424 134886 (3532466) + Stalker2_I-int LTR/Gypsy 1126 1586 (5810) 120894 1898 0.1 0.5 0.0 chrY 135086 136526 (3530826) + Stalker2_I-int LTR/Gypsy 1568 3015 (4381) 120894 890 2.4 0.1 0.0 chrY 136542 137254 (3530098) + Stalker2_I-int LTR/Gypsy 3356 4069 (3327) 120894 81 31.3 19.9 1.3 chrY 137692 137953 (3529399) + Copia_I-int LTR/Copia 1161 1470 (3123) 120895 404 20.4 7.2 1.1 chrY 137969 138508 (3528844) + Copia_I-int LTR/Copia 1707 2279 (2314) 120895 55 9.1 0.4 0.0 chrY 148991 149078 (3518274) + QUASIMODO_I-int LTR/Gypsy 5986 6060 (0) 120896 820 0.9 0.3 0.5 chrY 149066 149724 (3517628) + QUASIMODO_LTR LTR/Gypsy 1 658 (0) 120896 918 3.6 1.5 2.8 chrY 149736 150614 (3516738) C IDEFIX_I-int LTR/Gypsy (1472) 4156 3289 120897 1432 4.1 6.0 0.7 chrY 150613 151903 (3515449) C IDEFIX_I-int LTR/Gypsy (2485) 3143 1785 120897 71 12.0 0.0 0.0 chrY 151911 152010 (3515342) C MICROPIA_I-int LTR/Gypsy (2404) 2072 1973 120898 205 1.6 1.4 16.8 chrY 152011 152230 (3515122) C MICROPIA_LTR LTR/Gypsy (203) 273 83 120899 574 10.9 0.1 0.1 chrY 152221 152911 (3514441) + QUASIMODO_I-int LTR/Gypsy 5384 6060 (0) 120900 830 1.1 0.3 0.0 chrY 152899 153554 (3513798) + QUASIMODO_LTR LTR/Gypsy 1 658 (0) 120900 929 3.4 1.5 2.6 chrY 153566 154443 (3512909) C IDEFIX_I-int LTR/Gypsy (1472) 4156 3289 120901 3401 3.8 4.9 0.2 chrY 154442 157446 (3509906) C IDEFIX_I-int LTR/Gypsy (2485) 3143 1 120901 615 3.1 5.3 0.2 chrY 157899 158444 (3508908) C IDEFIX_LTR LTR/Gypsy (0) 594 21 120902 84 10.2 3.3 1.9 chrY 158454 158606 (3508746) + (ATAAT)n Simple_repeat 1 155 (0) 120903 825 0.8 0.6 0.1 chrY 159752 160406 (3506946) + QUASIMODO_LTR LTR/Gypsy 1 658 (0) 120904 314 2.5 0.0 0.4 chrY 160407 160648 (3506704) + QUASIMODO_I-int LTR/Gypsy 1 241 (5819) 120904 1759 6.8 0.6 0.4 chrY 160659 162286 (3505066) + QUASIMODO_I-int LTR/Gypsy 1075 2705 (3355) 120904 2912 7.1 2.9 0.0 chrY 162284 165326 (3502026) + QUASIMODO_I-int LTR/Gypsy 2859 5988 (72) 120904 475 2.8 4.1 0.0 chrY 165321 165712 (3501640) + QUASIMODO_LTR LTR/Gypsy 153 560 (98) 120905 1035 21.9 5.3 1.4 chrY 165914 167258 (3500094) C QUASIMODO_I-int LTR/Gypsy (0) 6060 4665 120906 1073 28.1 4.6 1.1 chrY 167301 169209 (3498143) C QUASIMODO_I-int LTR/Gypsy (1051) 4449 1779 120906 11 34.1 1.2 10.7 chrY 169494 169575 (3497777) C QUASIMODO_I-int LTR/Gypsy (4306) 1754 1680 120906 186 26.4 2.2 4.5 chrY 169586 169859 (3497493) C QUASIMODO_I-int LTR/Gypsy (4504) 1556 1289 120906 391 29.4 3.3 2.1 chrY 169858 170372 (3496980) C QUASIMODO_I-int LTR/Gypsy (5161) 899 379 120906 265 7.3 0.0 1.9 chrY 170583 170847 (3496505) + QUASIMODO_LTR LTR/Gypsy 1 260 (398) 120907 100 23.0 2.4 4.6 chrY 170850 171095 (3496257) + QUASIMODO_LTR LTR/Gypsy 410 650 (8) 120907 54 1.5 0.0 0.0 chrY 171112 171178 (3496174) + IDEFIX_LTR LTR/Gypsy 1 67 (527) 120908 636 2.9 0.9 0.2 chrY 171175 171722 (3495630) + IDEFIX_LTR LTR/Gypsy 43 594 (0) 120908 11 24.6 0.0 2.6 chrY 172005 172044 (3495308) + A-rich Low_complexity 1 39 (0) 120909 687 11.0 1.8 2.8 chrY 172223 173067 (3494285) + IDEFIX_I-int LTR/Gypsy 1 1367 (4693) 120910 642 8.2 1.5 1.9 chrY 173083 173745 (3493607) + IDEFIX_I-int LTR/Gypsy 1181 2133 (3927) 120910 1083 3.9 5.8 0.3 chrY 173745 174723 (3492629) + IDEFIX_I-int LTR/Gypsy 2111 3143 (2485) 120910 921 3.4 1.5 1.7 chrY 174722 175591 (3491761) + IDEFIX_I-int LTR/Gypsy 3289 4156 (1472) 120910 815 0.3 1.5 0.3 chrY 175603 176252 (3491100) C QUASIMODO_LTR LTR/Gypsy (0) 658 1 120911 2089 8.2 0.2 0.0 chrY 176240 178393 (3488959) C QUASIMODO_I-int LTR/Gypsy (0) 6060 3917 120911 670 5.4 0.0 0.0 chrY 178404 179068 (3488284) C QUASIMODO_I-int LTR/Gypsy (2546) 3514 2850 120911 1848 6.3 0.1 0.5 chrY 179069 180750 (3486602) C QUASIMODO_I-int LTR/Gypsy (3320) 2740 1066 120911 2403 7.5 1.5 0.0 chrY 180747 183281 (3484071) + QUASIMODO_I-int LTR/Gypsy 3500 6060 (0) 120912 496 0.7 2.7 0.0 chrY 183271 183681 (3483671) + QUASIMODO_LTR LTR/Gypsy 1 422 (236) 120913 40 0.0 0.0 1.8 chrY 183690 183747 (3483605) + QUASIMODO_LTR LTR/Gypsy 601 657 (1) 120913 446 3.8 2.7 0.0 chrY 183762 184208 (3483144) + IDEFIX_I-int LTR/Gypsy 4442 4900 (728) 120914 351 2.9 13.5 0.2 chrY 184228 184604 (3482748) + IDEFIX_I-int LTR/Gypsy 5202 5628 (0) 120914 628 2.7 5.9 0.2 chrY 184605 185166 (3482186) + IDEFIX_LTR LTR/Gypsy 1 594 (0) 120914 16 33.8 13.0 1.5 chrY 185376 185498 (3481854) C Gypsy3_LTR LTR/Gypsy (110) 288 152 120915 57 31.5 14.8 0.0 chrY 185507 185668 (3481684) C Gypsy6_I-int LTR/Gypsy (2500) 4512 4327 120916 61 34.9 17.9 5.1 chrY 185662 186129 (3481223) C NINJA_I-int LTR/Pao (2877) 3134 2610 120917 167 10.8 0.3 37.9 chrY 186452 186734 (3480618) + Gypsy8_LTR LTR/Gypsy 1 206 (98) 120918 384 7.4 6.1 0.2 chrY 186746 187109 (3480243) C DMCR1A LINE/CR1 (0) 4470 4084 120919 167 10.8 0.3 37.9 chrY 187110 187392 (3479960) + Gypsy8_LTR LTR/Gypsy 1 206 (98) 120920 587 3.6 8.3 0.0 chrY 187404 187930 (3479422) C DMCR1A LINE/CR1 (0) 4470 3900 120921 104 32.3 9.7 0.8 chrY 188311 188672 (3478680) C NINJA_I-int LTR/Pao (4483) 1528 1135 120917 1262 10.0 4.4 1.3 chrY 188717 190094 (3477258) + TC1_DM DNA/TcMar-Tc1 1 2559 (1530) 120922 222 15.9 21.3 0.0 chrY 192219 192551 (3474801) C DNAREP1_DM RC/Helitron (77) 517 114 120923 115 19.8 18.9 4.4 chrY 192545 192803 (3474549) + DMCR1A LINE/CR1 2092 2386 (2084) 120924 87 18.2 2.0 2.0 chrY 192841 192986 (3474366) + DNAREP1_DM RC/Helitron 328 473 (121) 120925 19 22.9 3.3 0.0 chrY 192986 193046 (3474306) + DNAREP1_DM RC/Helitron 384 446 (148) 120926 58 20.6 17.4 0.7 chrY 193025 193156 (3474196) + DMCR1A LINE/CR1 2708 2861 (1609) 120924 10 17.8 0.0 0.0 chrY 193409 193453 (3473899) C Gypsy_I-int LTR/Gypsy (1308) 5199 5155 120927 228 16.4 0.0 0.0 chrY 193455 193692 (3473660) C Gypsy_I-int LTR/Gypsy (1702) 4805 4568 120927 1427 11.7 12.9 0.9 chrY 193689 195144 (3472208) C Gypsy_I-int LTR/Gypsy (1842) 4665 3037 120927 1043 15.2 10.7 0.8 chrY 195144 196286 (3471066) C Gypsy_I-int LTR/Gypsy (3665) 2842 1588 120927 55 20.7 39.8 0.9 chrY 196278 196427 (3470925) C Gypsy_I-int LTR/Gypsy (5306) 1201 967 120927 135 17.4 6.0 0.0 chrY 196422 196605 (3470747) C Gypsy_I-int LTR/Gypsy (5718) 789 595 120927 773 25.3 6.5 2.1 chrY 196602 197636 (3469716) C G_DM LINE/Jockey (1) 4345 3267 120928 674 25.9 19.2 0.4 chrY 197681 198714 (3468638) C G_DM LINE/Jockey (1587) 2759 1543 120929 309 17.3 3.2 0.9 chrY 198713 199194 (3468158) + HELENA_RT LINE/Jockey 1023 1317 (0) 120930 703 14.0 3.2 0.0 chrY 199195 199857 (3467495) + Gypsy_I-int LTR/Gypsy 567 1250 (5257) 120931 514 10.8 14.5 0.0 chrY 199854 200391 (3466961) + Gypsy_I-int LTR/Gypsy 1664 2279 (4228) 120931 52 39.9 0.0 0.5 chrY 200394 200607 (3466745) C BS LINE/Jockey (1518) 3608 3396 120932 97 1.7 13.3 0.5 chrY 200695 200875 (3466477) + GA-rich Low_complexity 1 204 (0) 120933 357 0.0 0.0 0.0 chrY 203438 203742 (3463610) + (AGAGA)n Simple_repeat 1 305 (0) 120934 35 33.6 5.5 4.0 chrY 203784 204003 (3463349) C BS LINE/Jockey (4560) 566 344 120932 32 22.9 1.2 1.2 chrY 204114 204197 (3463155) C BS2 LINE/Jockey (4473) 248 165 120935 330 18.8 7.3 1.6 chrY 204226 204652 (3462700) C Gypsy_LTR LTR/Gypsy (31) 451 1 120936 930 10.9 7.2 0.4 chrY 204653 205526 (3461826) C Gypsy_I-int LTR/Gypsy (421) 6086 5154 120937 1098 11.9 7.6 0.0 chrY 205522 206524 (3460828) C Gypsy_I-int LTR/Gypsy (2534) 3973 2895 120937 237 15.4 12.8 1.6 chrY 206524 206835 (3460517) C Gypsy_I-int LTR/Gypsy (3715) 2792 2476 120937 70 32.9 20.7 0.0 chrY 206824 206987 (3460365) + BS LINE/Jockey 3263 3460 (1666) 120938 594 11.2 5.5 0.0 chrY 206988 207533 (3459819) C Gypsy_I-int LTR/Gypsy (3037) 3470 2895 120939 237 15.4 12.8 1.6 chrY 207533 207844 (3459508) C Gypsy_I-int LTR/Gypsy (3715) 2792 2476 120939 233 23.6 10.5 0.2 chrY 207835 208430 (3458922) + HELENA_RT LINE/Jockey 4 316 (1001) 120940 69 9.9 15.8 0.0 chrY 208442 208542 (3458810) + HELENA_RT LINE/Jockey 427 543 (774) 120940 724 21.2 11.9 0.5 chrY 208625 209667 (3457685) + G6_DM LINE/Jockey 748 1872 (2474) 120941 251 18.0 26.0 0.0 chrY 209913 210317 (3457035) + DMCR1A LINE/CR1 2112 2624 (1846) 120942 15 6.7 0.0 0.0 chrY 210318 210347 (3457005) + DNAREP1_DM RC/Helitron 1 30 (564) 120943 97 20.8 7.4 1.6 chrY 210385 210560 (3456792) + DNAREP1_DM RC/Helitron 262 447 (147) 120944 55 20.7 19.0 0.0 chrY 210549 210669 (3456683) + DMCR1A LINE/CR1 2718 2861 (1609) 120942 221 33.1 34.3 2.4 chrY 211873 212982 (3454370) + Copia1-I_DM LTR/Copia 1340 2797 (1327) 120945 162 37.1 12.6 3.0 chrY 213055 213752 (3453600) + BS LINE/Jockey 75 837 (4289) 120946 473 5.9 7.8 8.7 chrY 213915 214412 (3452940) + Gypsy2-I_DM LTR/Gypsy 150 643 (5902) 120947 1078 5.6 12.8 0.9 chrY 214413 215561 (3451791) + Gypsy2-I_DM LTR/Gypsy 976 2261 (4284) 120947 46 9.4 0.0 0.0 chrY 215564 215627 (3451725) + Gypsy2-I_DM LTR/Gypsy 2852 2915 (3630) 120947 191 9.2 0.3 0.0 chrY 215619 215923 (3451429) + Gypsy2-I_DM LTR/Gypsy 3926 4102 (2443) 120947 375 4.3 4.2 2.5 chrY 215927 216287 (3451065) + ROVER-LTR_DM LTR/Gypsy 1 367 (0) 120948 47 7.6 1.5 0.0 chrY 216288 216353 (3450999) + ROVER-I_DM LTR/Gypsy 1 67 (6517) 120948 516 26.1 20.0 0.7 chrY 216339 217129 (3450223) + G_DM LINE/Jockey 930 1871 (2475) 120949 250 18.0 26.0 0.0 chrY 217376 217780 (3449572) + DMCR1A LINE/CR1 2112 2624 (1846) 120950 15 6.7 0.0 0.0 chrY 217781 217810 (3449542) + DNAREP1_DM RC/Helitron 1 30 (564) 120951 93 20.6 7.7 1.7 chrY 217852 218019 (3449333) + DNAREP1_DM RC/Helitron 266 443 (151) 120952 58 19.8 19.0 0.0 chrY 218012 218132 (3449220) + DMCR1A LINE/CR1 2718 2861 (1609) 120950 46 33.1 38.1 0.0 chrY 219321 219640 (3447712) + Copia1-I_DM LTR/Copia 1340 1781 (2343) 120953 97 39.9 8.6 3.0 chrY 219652 219966 (3447386) + Copia1-I_DM LTR/Copia 2466 2797 (1327) 120953 157 36.9 13.4 3.0 chrY 220039 220731 (3446621) + BS LINE/Jockey 75 837 (4289) 120954 475 5.9 7.8 8.5 chrY 220894 221390 (3445962) + Gypsy2-I_DM LTR/Gypsy 150 643 (5902) 120955 1077 5.4 12.9 0.9 chrY 221391 222538 (3444814) + Gypsy2-I_DM LTR/Gypsy 976 2260 (4285) 120955 46 9.4 0.0 0.0 chrY 222542 222605 (3444747) + Gypsy2-I_DM LTR/Gypsy 2852 2915 (3630) 120955 191 9.2 0.3 0.0 chrY 222597 222901 (3444451) + Gypsy2-I_DM LTR/Gypsy 3926 4102 (2443) 120955 378 4.0 4.2 2.5 chrY 222905 223265 (3444087) + ROVER-LTR_DM LTR/Gypsy 1 367 (0) 120956 345 19.7 13.3 11.2 chrY 223266 223950 (3443402) + ROVER-I_DM LTR/Gypsy 1 698 (5886) 120956 507 28.0 9.8 4.0 chrY 223950 224883 (3442469) + ROVER-I_DM LTR/Gypsy 264 1250 (5334) 120957 4025 9.1 0.9 0.9 chrY 224885 228689 (3438663) + ROVER-I_DM LTR/Gypsy 1511 5314 (1270) 120957 594 9.3 4.5 0.8 chrY 228719 229327 (3438025) + ROVER-I_DM LTR/Gypsy 5990 6584 (0) 120957 378 4.0 4.2 2.5 chrY 229296 229656 (3437696) + ROVER-LTR_DM LTR/Gypsy 1 367 (0) 120957 47 7.6 1.5 0.0 chrY 229657 229722 (3437630) + ROVER-I_DM LTR/Gypsy 1 67 (6517) 120957 516 26.1 18.6 0.8 chrY 229708 230490 (3436862) + G_DM LINE/Jockey 930 1851 (2495) 120958 250 18.0 26.0 0.0 chrY 230744 231148 (3436204) + DMCR1A LINE/CR1 2112 2624 (1846) 120959 14 0.0 0.0 0.0 chrY 231149 231174 (3436178) + DNAREP1_DM RC/Helitron 1 26 (568) 120960 97 20.8 7.4 1.6 chrY 231216 231391 (3435961) + DNAREP1_DM RC/Helitron 262 447 (147) 120961 55 20.7 19.0 0.0 chrY 231380 231500 (3435852) + DMCR1A LINE/CR1 2718 2861 (1609) 120959 220 33.1 34.3 2.4 chrY 232700 233808 (3433544) + Copia1-I_DM LTR/Copia 1341 2797 (1327) 120962 155 35.7 14.9 3.6 chrY 233876 234451 (3432901) + BS LINE/Jockey 75 713 (4413) 120963 421 5.9 7.4 9.6 chrY 234521 234967 (3432385) + Gypsy2-I_DM LTR/Gypsy 206 643 (5902) 120964 556 5.5 20.1 1.0 chrY 234968 235703 (3431649) + Gypsy2-I_DM LTR/Gypsy 976 1851 (4694) 120964 416 5.1 0.3 0.0 chrY 235701 236056 (3431296) + Gypsy2-I_DM LTR/Gypsy 6100 6456 (89) 120964 122 17.9 2.0 0.0 chrY 236035 236185 (3431167) + Gypsy2-LTR_DM LTR/Gypsy 182 335 (3) 120964 48 26.7 18.5 0.0 chrY 236186 236313 (3431039) + BS LINE/Jockey 980 1132 (3994) 120963 258 27.8 4.4 0.3 chrY 236320 236658 (3430694) + BS LINE/Jockey 1329 1681 (3445) 120963 80 31.9 0.7 0.0 chrY 236903 237046 (3430306) + BS LINE/Jockey 1961 2105 (3021) 120963 104 26.1 29.3 1.9 chrY 237169 237414 (3429938) + BS LINE/Jockey 2015 2326 (2800) 120963 1299 8.8 1.8 1.0 chrY 237276 238658 (3428694) + Gypsy2-I_DM LTR/Gypsy 3088 4573 (1972) 120965 108 8.0 0.0 0.0 chrY 238658 238770 (3428582) + Gypsy2-I_DM LTR/Gypsy 3990 4102 (2443) 120966 626 1.6 0.0 0.4 chrY 238777 239284 (3428068) C QUASIMODO_LTR LTR/Gypsy (0) 658 153 120967 974 11.2 0.6 0.0 chrY 239258 240350 (3427002) C QUASIMODO_I-int LTR/Gypsy (47) 6013 4914 120968 202 6.0 0.0 0.7 chrY 240865 241071 (3426281) + Gypsy2-I_DM LTR/Gypsy 3088 3352 (3193) 120969 1306 5.7 2.0 0.0 chrY 241048 242121 (3425231) + Gypsy2-I_DM LTR/Gypsy 3488 4583 (1962) 120969 814 9.4 11.6 3.3 chrY 242640 244041 (3423311) + Gypsy2-I_DM LTR/Gypsy 5107 6456 (89) 120969 122 17.9 2.0 0.0 chrY 244020 244170 (3423182) + Gypsy2-LTR_DM LTR/Gypsy 182 335 (3) 120969 42 27.3 19.5 0.0 chrY 244171 244291 (3423061) + BS LINE/Jockey 980 1125 (4001) 120970 258 28.0 4.4 0.3 chrY 244303 244642 (3422710) + BS LINE/Jockey 1328 1681 (3445) 120970 81 29.9 0.7 0.0 chrY 244887 245030 (3422322) + BS LINE/Jockey 1961 2105 (3021) 120970 61 26.8 7.1 3.8 chrY 245153 245307 (3422045) + BS LINE/Jockey 2015 2174 (2952) 120970 192 8.6 0.0 0.7 chrY 245335 245541 (3421811) + Gypsy2-I_DM LTR/Gypsy 3069 3352 (3193) 120971 711 5.4 4.1 0.0 chrY 245519 246109 (3421243) + Gypsy2-I_DM LTR/Gypsy 3488 4102 (2443) 120971 1506 7.7 11.0 2.9 chrY 246119 248126 (3419226) + Gypsy2-I_DM LTR/Gypsy 4450 6456 (89) 120971 24 15.6 11.1 0.0 chrY 248104 248148 (3419204) + Gypsy2-LTR_DM LTR/Gypsy 181 230 (108) 120971 793 33.6 10.4 4.5 chrY 248527 250729 (3416623) C GTWIN_I-int LTR/Gypsy (1774) 4647 2319 120972 337 27.3 6.1 5.5 chrY 251772 252282 (3415070) C GTWIN_I-int LTR/Gypsy (4348) 1367 854 120972 239 12.7 6.0 1.3 chrY 253172 253473 (3413879) + ACCORD2_I-int LTR/Gypsy 456 771 (6441) 120973 284 15.6 37.6 1.2 chrY 253441 253882 (3413470) + ACCORD2_I-int LTR/Gypsy 965 1565 (5647) 120973 622 5.5 4.1 6.6 chrY 253883 254490 (3412862) + IDEFIX_LTR LTR/Gypsy 1 594 (0) 120974 674 7.8 0.2 0.3 chrY 254938 255604 (3411748) + IDEFIX_I-int LTR/Gypsy 1 944 (5116) 120975 39 6.5 0.0 0.0 chrY 255605 255666 (3411686) + IDEFIX_I-int LTR/Gypsy 717 778 (4850) 120975 563 5.5 0.0 0.0 chrY 255660 256185 (3411167) C DM412 LTR/Gypsy (598) 5879 5354 120976 260 5.9 3.2 0.0 chrY 256212 256464 (3410888) + IDEFIX_I-int LTR/Gypsy 560 820 (4808) 120977 763 5.8 9.6 1.1 chrY 256472 257857 (3409495) + IDEFIX_I-int LTR/Gypsy 959 2461 (3167) 120977 330 16.5 2.6 0.9 chrY 257828 258256 (3409096) C DM412B_LTR LTR/Gypsy (105) 466 31 120978 1939 6.4 5.7 0.8 chrY 258277 260151 (3407201) C DM412 LTR/Gypsy (63) 6414 4449 120979 2705 6.7 0.0 0.0 chrY 260252 262642 (3404710) C Copia_I-int LTR/Copia (2201) 2392 1 120980 314 1.4 0.0 0.0 chrY 262643 262918 (3404434) C Copia_LTR LTR/Copia (0) 276 1 120980 528 33.6 1.6 0.3 chrY 262919 264200 (3403152) + HMSBEAGLE_I-int LTR/Gypsy 3822 5120 (1409) 120981 121 34.9 6.2 6.9 chrY 264210 265084 (3402268) + Gypsy2-I_DM LTR/Gypsy 4917 5785 (760) 120982 195 0.6 0.0 0.0 chrY 265085 265248 (3402104) + Bica_LTR LTR/Gypsy 1 164 (0) 120983 3571 0.9 0.5 0.4 chrY 265249 268076 (3399276) + Bica_I-int LTR/Gypsy 1 2967 (1811) 120983 193 0.6 0.0 0.0 chrY 268068 268232 (3399120) + Bica_I-int LTR/Gypsy 4613 4777 (1) 120983 195 0.6 0.0 0.0 chrY 268233 268396 (3398956) + Bica_LTR LTR/Gypsy 1 164 (0) 120983 988 1.0 0.6 0.0 chrY 268397 269273 (3398079) + Bica_I-int LTR/Gypsy 1 1018 (3760) 120983 20 0.0 0.0 0.0 chrY 269303 269342 (3398010) C BARI1 DNA/TcMar-Tc1 (1649) 40 1 120984 567 2.8 11.9 1.0 chrY 269311 269846 (3397506) + IDEFIX_LTR LTR/Gypsy 1 594 (0) 120985 13 21.8 0.0 4.5 chrY 270118 270163 (3397189) + A-rich Low_complexity 1 44 (0) 120986 839 6.8 3.1 0.5 chrY 270294 271105 (3396247) + IDEFIX_I-int LTR/Gypsy 1 994 (5066) 120987 563 5.5 0.0 0.0 chrY 271099 271624 (3395728) C DM412 LTR/Gypsy (598) 5879 5354 120988 261 5.9 3.2 0.0 chrY 271651 271903 (3395449) + IDEFIX_I-int LTR/Gypsy 560 820 (4808) 120989 769 5.8 9.5 1.1 chrY 271911 273297 (3394055) + IDEFIX_I-int LTR/Gypsy 959 2461 (3167) 120989 330 16.5 2.6 0.9 chrY 273268 273696 (3393656) C DM412B_LTR LTR/Gypsy (105) 466 31 120990 3118 6.2 3.7 1.0 chrY 273717 276635 (3390717) C DM412 LTR/Gypsy (63) 6414 3419 120991 563 3.0 11.9 1.0 chrY 276648 277183 (3390169) + IDEFIX_LTR LTR/Gypsy 1 594 (0) 120992 13 21.8 0.0 4.5 chrY 277432 277477 (3389875) + A-rich Low_complexity 1 44 (0) 120993 591 13.0 3.5 1.3 chrY 277606 278524 (3388828) + IDEFIX_I-int LTR/Gypsy 1 1485 (4575) 120994 2 41.4 3.0 1.0 chrY 279311 279410 (3387942) C Gypsy_I-int LTR/Gypsy (834) 4152 4051 120995 226 0.0 0.0 0.0 chrY 279506 279697 (3387655) C CIRCE LTR/Gypsy (1376) 4980 4789 120996 489 1.7 19.3 0.6 chrY 279696 280325 (3387027) C CIRCE LTR/Gypsy (2094) 4262 3515 120996 102 46.5 12.7 2.5 chrY 281002 282064 (3385288) C Gypsy_I-int LTR/Gypsy (2134) 4154 2268 120995 17 16.1 0.0 0.0 chrY 283774 283808 (3383544) + (TTTA)n Simple_repeat 1 35 (0) 120997 379 4.0 3.9 2.7 chrY 284309 284671 (3382681) + ROVER-LTR_DM LTR/Gypsy 1 367 (0) 120998 285 13.0 5.5 18.3 chrY 284672 285124 (3382228) + ROVER-I_DM LTR/Gypsy 1 404 (6180) 120998 2053 13.0 0.9 0.8 chrY 285228 287234 (3380118) C Gypsy_I-int LTR/Gypsy (4385) 2122 1 120995 526 10.2 0.4 0.2 chrY 287235 287715 (3379637) C Gypsy_LTR LTR/Gypsy (0) 482 1 120995 356 2.0 0.3 6.8 chrY 287716 288029 (3379323) C MAX_I-int LTR/Pao (7619) 295 1 120999 347 2.7 7.4 0.0 chrY 288030 288328 (3379024) C MAX_LTR LTR/Pao (0) 321 1 120999 2765 1.7 3.9 1.3 chrY 288338 291150 (3376202) C MAX_I-int LTR/Pao (2) 7912 5025 120999 700 2.7 0.0 0.0 chrY 291152 291748 (3375604) C MAX_I-int LTR/Pao (3028) 4886 4290 120999 1141 1.4 4.7 0.0 chrY 291746 292644 (3374708) C MAX_I-int LTR/Pao (4095) 3819 2879 120999 3 43.0 0.0 0.0 chrY 292669 292768 (3374584) C QUASIMODO_I-int LTR/Gypsy (3352) 2148 2049 121000 99 44.4 5.1 1.0 chrY 293129 293617 (3373735) C QUASIMODO_I-int LTR/Gypsy (5101) 959 451 121000 14 18.3 2.7 0.0 chrY 293638 293674 (3373678) + (TTTTAG)n Simple_repeat 1 38 (0) 121001 181 7.9 7.9 0.0 chrY 295204 295381 (3371971) C DIVER2_I-int LTR/Pao (3955) 192 1 121002 488 1.6 0.0 0.0 chrY 295382 295766 (3371586) C DIVER2_LTR LTR/Pao (0) 385 1 121002 115 15.2 6.5 14.9 chrY 296142 296373 (3370979) C ACCORD2_LTR LTR/Gypsy (0) 215 1 121003 169 38.5 18.8 5.2 chrY 296410 298100 (3369252) C QUASIMODO_I-int LTR/Gypsy (3751) 2309 452 121004 178 8.4 7.9 0.0 chrY 299640 299817 (3367535) C DIVER2_I-int LTR/Pao (3955) 192 1 121005 488 1.6 0.0 0.0 chrY 299818 300202 (3367150) C DIVER2_LTR LTR/Pao (0) 385 1 121005 115 15.2 6.5 14.9 chrY 300578 300809 (3366543) C ACCORD2_LTR LTR/Gypsy (0) 215 1 121006 12 32.8 0.0 10.4 chrY 300823 300907 (3366445) C QUASIMODO_I-int LTR/Gypsy (3881) 2179 2103 121007 13 15.9 2.7 2.7 chrY 300917 300953 (3366399) + (TATCATG)n Simple_repeat 1 37 (0) 121008 12 40.5 11.6 5.2 chrY 300954 301414 (3365938) C QUASIMODO_I-int LTR/Gypsy (4571) 1489 1392 121009 98 44.4 5.1 1.0 chrY 301775 302263 (3365089) C QUASIMODO_I-int LTR/Gypsy (5101) 959 451 121009 14 18.3 2.7 0.0 chrY 302284 302320 (3365032) + (TTTTAG)n Simple_repeat 1 38 (0) 121010 75 6.7 4.4 2.1 chrY 303831 303921 (3363431) C DNAREP1_DM RC/Helitron (499) 95 3 121011 877 13.5 10.7 0.4 chrY 303932 304910 (3362442) C IDEFIX_I-int LTR/Gypsy (371) 5257 4178 121012 12 18.2 0.0 0.0 chrY 304917 304971 (3362381) C IDEFIX_I-int LTR/Gypsy (2273) 3355 3301 121012 114 12.8 0.0 0.0 chrY 304968 305108 (3362244) C IDEFIX_I-int LTR/Gypsy (2583) 3045 2905 121012 1466 7.5 7.5 0.4 chrY 305108 306452 (3360900) C DMRT1C LINE/R1 (2) 5441 4002 121013 98 10.1 0.0 1.7 chrY 306446 306572 (3360780) C DMRT1C LINE/R1 (1702) 3741 3628 121013 46 1.5 13.4 0.0 chrY 306565 306631 (3360721) C DMRT1C LINE/R1 (3195) 2248 2173 121014 233 7.9 4.2 0.0 chrY 306629 306844 (3360508) C DMRT1C LINE/R1 (3207) 2236 2012 121015 159 8.0 0.0 0.0 chrY 306866 307027 (3360325) C DMRT1C LINE/R1 (4365) 1078 917 121015 239 14.6 20.0 0.0 chrY 307025 307319 (3360033) C IDEFIX_I-int LTR/Gypsy (4224) 1404 1051 121016 490 9.7 8.4 4.4 chrY 307486 308056 (3359296) C IDEFIX_LTR LTR/Gypsy (0) 594 2 121017 23 29.8 2.4 1.2 chrY 308145 308229 (3359123) + Copia_I-int LTR/Copia 4427 4512 (81) 121018 199 20.6 14.9 0.0 chrY 309338 309619 (3357733) + MICROPIA_I-int LTR/Gypsy 241 564 (3912) 121019 256 25.4 8.2 0.3 chrY 309627 310271 (3357081) + MICROPIA_I-int LTR/Gypsy 909 2108 (2368) 121019 455 20.3 23.8 0.8 chrY 310269 310983 (3356369) + MICROPIA_I-int LTR/Gypsy 2546 3345 (1131) 121019 15 21.8 1.4 4.3 chrY 311062 311133 (3356219) + G5_DM LINE/Jockey 406 475 (4381) 121020 15 19.8 2.0 4.1 chrY 311911 311969 (3355383) + (TAATAT)n Simple_repeat 1 57 (0) 121021 12 18.9 7.1 0.0 chrY 312197 312238 (3355114) + (TTATAT)n Simple_repeat 1 45 (0) 121022 1723 32.3 6.6 3.0 chrY 312395 315665 (3351687) C ZAM_I-int LTR/Gypsy (1612) 5878 2496 121023 21 6.8 3.2 0.0 chrY 315966 315996 (3351356) + (AT)n Simple_repeat 1 32 (0) 121024 490 1.5 0.5 0.0 chrY 316467 316857 (3350495) + Invader6_LTR LTR/Gypsy 1 393 (0) 121025 20 20.5 0.0 0.0 chrY 316864 316902 (3350450) + (T)n Simple_repeat 1 39 (0) 121026 13 20.8 0.0 0.0 chrY 317353 317385 (3349967) + (TTTAT)n Simple_repeat 1 33 (0) 121027 256 0.9 8.0 0.0 chrY 317494 317718 (3349634) + Invader6_LTR LTR/Gypsy 1 243 (150) 121028 1420 32.2 3.3 3.2 chrY 317715 320886 (3346466) C ZAM_I-int LTR/Gypsy (730) 6482 2496 121029 16 4.5 4.3 0.0 chrY 321187 321209 (3346143) + (AT)n Simple_repeat 1 24 (0) 121030 16 23.3 0.0 0.0 chrY 321657 321691 (3345661) + (T)n Simple_repeat 1 35 (0) 121031 13 15.9 0.0 0.0 chrY 322143 322170 (3345182) + (TTTAT)n Simple_repeat 1 28 (0) 121032 246 0.5 8.4 0.0 chrY 322284 322498 (3344854) + Invader6_LTR LTR/Gypsy 1 233 (160) 121033 1063 1.9 0.3 8.8 chrY 322521 324141 (3343211) + (ACAATAG)n Simple_repeat 1 1495 (0) 121034 322 23.3 14.5 0.0 chrY 324193 324320 (3343032) + G5_DM LINE/Jockey 1079 1215 (3641) 121035 28 0.0 5.9 0.0 chrY 324321 324354 (3342998) + (TATAAAA)n Simple_repeat 1 36 (0) 121036 322 23.3 14.5 0.0 chrY 324355 324762 (3342590) + G5_DM LINE/Jockey 1216 1692 (3164) 121035 495 3.4 15.3 0.0 chrY 324771 325536 (3341816) + G5A_DM LINE/Jockey 227 1109 (1691) 121037 1659 4.9 3.0 1.5 chrY 325538 326975 (3340377) + G5A_DM LINE/Jockey 1262 2720 (80) 121037 310 12.9 14.5 0.2 chrY 326973 327338 (3340014) C IDEFIX_I-int LTR/Gypsy (1015) 4613 4196 121038 812 13.9 19.6 0.2 chrY 327339 329073 (3338279) C IDEFIX_I-int LTR/Gypsy (2633) 2995 688 121038 603 20.1 4.4 2.4 chrY 329071 329836 (3337516) C IDEFIX_I-int LTR/Gypsy (4846) 782 2 121038 341 14.2 9.8 9.6 chrY 330135 330646 (3336706) C IDEFIX_LTR LTR/Gypsy (7) 587 75 121038 1934 10.9 14.6 0.0 chrY 330642 332788 (3334564) C DMRT1B LINE/R1 (0) 5183 2725 121039 1014 11.8 14.3 0.1 chrY 332807 334682 (3332670) C DMRT1B LINE/R1 (2607) 2576 434 121039 30 19.7 11.1 1.3 chrY 334687 334758 (3332594) C DMRT1B LINE/R1 (4965) 218 140 121039 20 24.7 59.1 0.0 chrY 334886 335071 (3332281) + DMCR1A LINE/CR1 4173 4468 (2) 121040 17 20.3 2.4 2.4 chrY 335247 335288 (3332064) + (AT)n Simple_repeat 1 42 (0) 121041 23 29.3 1.0 3.2 chrY 336063 336159 (3331193) + A-rich Low_complexity 1 95 (0) 121042 308 3.0 0.3 9.0 chrY 337588 337877 (3329475) C MDG3_LTR LTR/Gypsy (0) 267 1 121043 5821 2.7 1.7 0.2 chrY 337878 342790 (3324562) C MDG3_I-int LTR/Gypsy (0) 4986 1 121043 72 14.4 1.0 0.0 chrY 342790 342886 (3324466) C MDG3_LTR LTR/Gypsy (0) 267 170 121043 1243 11.3 12.3 0.1 chrY 342862 344052 (3323300) C DMRT1B LINE/R1 (308) 4875 3539 121044 25 10.0 0.0 0.0 chrY 344062 344111 (3323241) C DMRT1B LINE/R1 (1844) 3339 3290 121044 965 14.5 12.6 0.2 chrY 344108 345917 (3321435) C DMRT1B LINE/R1 (2672) 2511 434 121044 26 19.1 11.6 1.3 chrY 345926 345994 (3321358) C DMRT1B LINE/R1 (4969) 214 139 121044 29 24.5 58.0 0.0 chrY 346120 346307 (3321045) + DMCR1A LINE/CR1 4172 4468 (2) 121045 17 20.3 2.4 2.4 chrY 346481 346522 (3320830) + (AT)n Simple_repeat 1 42 (0) 121046 23 31.0 0.0 3.2 chrY 347297 347393 (3319959) + A-rich Low_complexity 1 94 (0) 121047 308 3.0 0.3 9.0 chrY 348822 349111 (3318241) C MDG3_LTR LTR/Gypsy (0) 267 1 121048 510 3.3 12.9 0.2 chrY 349112 349629 (3317723) C MDG3_I-int LTR/Gypsy (0) 4986 4403 121048 474 1.2 1.6 2.0 chrY 349630 350133 (3317219) + (TTATATA)n Simple_repeat 1 502 (0) 121049 506 0.4 0.7 0.4 chrY 352784 353242 (3314110) + (ATATTAT)n Simple_repeat 1 460 (0) 121050 400 0.0 0.6 0.0 chrY 353343 353690 (3313662) + (ATATATT)n Simple_repeat 1 350 (0) 121051 3281 1.9 0.0 0.0 chrY 353691 356121 (3311231) + BS2 LINE/Jockey 2291 4721 (0) 121052 24 3.5 0.0 0.0 chrY 356128 356156 (3311196) + (A)n Simple_repeat 1 29 (0) 121053 22 30.7 26.8 0.0 chrY 356166 356318 (3311034) + DNAREP1_DM RC/Helitron 208 401 (193) 121054 97 12.8 0.0 0.8 chrY 357104 357229 (3310123) C DNAREP1_DM RC/Helitron (32) 562 438 121055 88 23.7 21.9 0.3 chrY 357231 357463 (3309889) C DNAREP1_DM RC/Helitron (110) 484 202 121056 13 17.2 4.9 2.4 chrY 357728 357768 (3309584) + (TTATA)n Simple_repeat 1 42 (0) 121057 685 18.3 1.0 0.4 chrY 358103 358817 (3308535) + Copia_I-int LTR/Copia 1561 2279 (2314) 121058 986 3.6 0.0 0.2 chrY 359065 359919 (3307433) + TRANSIB2 DNA/CMC-Transib 1 853 (1991) 121059 754 0.8 0.5 1.0 chrY 359919 360532 (3306820) + TRANSIB2 DNA/CMC-Transib 2234 2844 (0) 121060 389 31.6 5.2 0.9 chrY 360533 361144 (3306208) + Copia_I-int LTR/Copia 2726 3363 (1230) 121058 366 18.4 13.6 2.5 chrY 361145 361717 (3305635) C QUASIMODO_LTR LTR/Gypsy (19) 639 5 121061 3 20.8 3.8 0.0 chrY 361707 361759 (3305593) + Copia_I-int LTR/Copia 3362 3416 (1177) 121058 67 26.0 19.0 0.0 chrY 361784 361961 (3305391) + Invader6_I-int LTR/Gypsy 874 1127 (2059) 121062 80 34.5 14.8 0.0 chrY 361976 362198 (3305154) + Invader6_I-int LTR/Gypsy 1368 1623 (2476) 121062 14 14.0 0.0 4.7 chrY 362216 362260 (3305092) + Invader6_I-int LTR/Gypsy 1981 2023 (1311) 121062 736 11.8 23.4 13.2 chrY 362261 363240 (3304112) + Invader5_I-int LTR/Gypsy 1788 2855 (479) 121063 61 17.0 45.0 10.1 chrY 363245 363426 (3303926) + Invader5_I-int LTR/Gypsy 2800 3046 (288) 121063 97 17.8 1.3 2.7 chrY 363437 363586 (3303766) + Invader5_LTR LTR/Gypsy 85 232 (120) 121064 135 24.9 16.7 0.7 chrY 363626 363876 (3303476) + Invader5_I-int LTR/Gypsy 3201 3491 (2569) 121063 86 21.4 4.1 2.3 chrY 363904 364075 (3303277) C R1_DM LINE/R1 (607) 4749 4575 121065 659 12.7 27.3 1.4 chrY 364120 364968 (3302384) C R1_DM LINE/R1 (1418) 3938 2873 121065 25 8.8 0.0 0.0 chrY 364970 365037 (3302315) C R1_DM LINE/R1 (3354) 2002 1935 121065 219 19.1 33.9 0.1 chrY 365048 365646 (3301706) C R1_DM LINE/R1 (3536) 1820 1020 121065 71 14.0 22.4 1.4 chrY 365655 365770 (3301582) C DNAREP1_DM RC/Helitron (426) 168 29 121066 57 27.0 9.2 0.0 chrY 365769 365920 (3301432) + QUASIMODO_I-int LTR/Gypsy 3326 3491 (2569) 121067 245 15.0 33.2 5.4 chrY 365955 366762 (3300590) + PROTOP_B DNA/P 10 962 (191) 121068 121 4.3 0.0 0.0 chrY 366766 366881 (3300471) + PROTOP_B DNA/P 1038 1153 (0) 121069 210 33.3 6.3 4.8 chrY 366901 367373 (3299979) + Chouto_I-int LTR/Gypsy 894 1373 (4342) 121070 15 7.8 0.0 6.9 chrY 367456 367486 (3299866) + (AAT)n Simple_repeat 1 29 (0) 121071 178 20.0 8.9 0.9 chrY 367817 368109 (3299243) C R1_DM LINE/R1 (466) 4890 4575 121072 336 9.3 4.7 1.9 chrY 368154 368514 (3298838) C R1_DM LINE/R1 (1418) 3938 3568 121073 155 20.0 38.2 0.1 chrY 368518 369007 (3298345) C R1_DM LINE/R1 (3661) 1695 1020 121072 71 14.0 22.4 1.4 chrY 369016 369131 (3298221) C DNAREP1_DM RC/Helitron (426) 168 29 121074 57 27.0 9.2 0.0 chrY 369130 369281 (3298071) + QUASIMODO_I-int LTR/Gypsy 3326 3491 (2569) 121075 245 15.0 33.2 5.4 chrY 369316 370123 (3297229) + PROTOP_B DNA/P 10 962 (191) 121076 121 4.3 0.0 0.0 chrY 370127 370242 (3297110) + PROTOP_B DNA/P 1038 1153 (0) 121077 208 33.6 6.4 4.8 chrY 370262 370733 (3296619) + Chouto_I-int LTR/Gypsy 894 1372 (4343) 121078 15 7.8 0.0 6.9 chrY 370817 370847 (3296505) + (AAT)n Simple_repeat 1 29 (0) 121079 178 20.0 8.9 0.9 chrY 371178 371470 (3295882) C R1_DM LINE/R1 (466) 4890 4575 121080 663 13.2 25.7 1.0 chrY 371515 372371 (3294981) C R1_DM LINE/R1 (1418) 3938 2873 121080 25 8.8 0.0 0.0 chrY 372373 372440 (3294912) C R1_DM LINE/R1 (3354) 2002 1935 121080 216 19.5 33.8 0.1 chrY 372451 373050 (3294302) C R1_DM LINE/R1 (3536) 1820 1019 121080 68 14.9 22.4 1.4 chrY 373058 373173 (3294179) C DNAREP1_DM RC/Helitron (426) 168 29 121081 57 27.0 9.2 0.0 chrY 373172 373323 (3294029) + QUASIMODO_I-int LTR/Gypsy 3326 3491 (2569) 121082 245 15.1 33.2 5.4 chrY 373358 374165 (3293187) + PROTOP_B DNA/P 10 962 (191) 121083 121 4.3 0.0 0.0 chrY 374169 374284 (3293068) + PROTOP_B DNA/P 1038 1153 (0) 121084 213 33.3 7.1 4.2 chrY 374304 374770 (3292582) + Chouto_I-int LTR/Gypsy 894 1373 (4342) 121085 15 7.8 0.0 6.9 chrY 374853 374883 (3292469) + (AAT)n Simple_repeat 1 29 (0) 121086 15 32.4 1.3 2.7 chrY 374994 375069 (3292283) + (AAT)n Simple_repeat 1 75 (0) 121087 177 20.3 8.9 0.9 chrY 375214 375506 (3291846) C R1_DM LINE/R1 (466) 4890 4575 121088 662 13.2 25.7 1.0 chrY 375551 376407 (3290945) C R1_DM LINE/R1 (1418) 3938 2873 121088 25 9.0 0.0 0.0 chrY 376410 376476 (3290876) C R1_DM LINE/R1 (3355) 2001 1935 121088 217 19.4 33.8 0.1 chrY 376487 377086 (3290266) C R1_DM LINE/R1 (3536) 1820 1019 121088 279 13.1 28.8 0.9 chrY 377107 377207 (3290145) + Gypsy11_LTR LTR/Gypsy 10 171 (281) 121089 29 0.0 3.2 0.0 chrY 377208 377238 (3290114) + (CATA)n Simple_repeat 1 32 (0) 121090 279 13.1 28.8 0.9 chrY 377239 377483 (3289869) + Gypsy11_LTR LTR/Gypsy 172 451 (1) 121089 1162 10.2 10.0 6.6 chrY 377486 378645 (3288707) + Gypsy11_I-int LTR/Gypsy 9 1205 (2319) 121089 119 14.9 0.5 0.5 chrY 378633 378889 (3288463) + STALKER4_I-int LTR/Gypsy 5358 5843 (687) 121091 15 18.1 2.6 0.0 chrY 378952 378989 (3288363) + (GCCTTT)n Simple_repeat 1 39 (0) 121092 18 25.8 2.7 2.7 chrY 379633 379670 (3287682) + A-rich Low_complexity 1 69 (0) 121093 19 14.2 0.0 0.0 chrY 379671 379701 (3287651) + (A)n Simple_repeat 1 31 (0) 121094 580 14.4 20.5 5.4 chrY 380246 381261 (3286091) + Gypsy12_LTR LTR/Gypsy 10 1213 (1123) 121095 491 9.3 10.0 3.8 chrY 381265 381832 (3285520) + Gypsy12_LTR LTR/Gypsy 1735 2336 (0) 121095 13 25.0 0.0 4.4 chrY 382008 382054 (3285298) + A-rich Low_complexity 1 45 (0) 121096 913 34.3 6.2 3.9 chrY 382146 384419 (3282933) + GTWIN_I-int LTR/Gypsy 2319 4643 (1778) 121097 1 17.9 0.0 0.0 chrY 385015 385042 (3282310) + NOMAD_I-int LTR/Gypsy 5960 5987 (585) 121098 2 34.1 9.1 0.0 chrY 385247 385334 (3282018) + Gypsy9_I-int LTR/Gypsy 3828 3923 (754) 121099 96 5.6 0.8 0.0 chrY 386287 386411 (3280941) C DMCR1A LINE/CR1 (146) 4324 4199 121100 893 4.8 2.5 0.0 chrY 386407 387171 (3280181) C DMCR1A LINE/CR1 (551) 3919 3136 121100 667 5.1 1.5 0.3 chrY 387188 387778 (3279574) C DMCR1A LINE/CR1 (1521) 2949 2352 121100 502 33.5 13.4 4.2 chrY 387906 389134 (3278218) C QUASIMODO_I-int LTR/Gypsy (4305) 1755 418 121101 21 23.3 0.0 0.0 chrY 389226 389270 (3278082) + (T)n Simple_repeat 1 45 (0) 121102 64 23.6 20.8 0.6 chrY 389721 389869 (3277483) C MAX_I-int LTR/Pao (915) 6999 6821 121103 102 14.2 18.7 0.0 chrY 389882 390015 (3277337) C MAX_I-int LTR/Pao (1206) 6708 6550 121103 200 15.1 10.0 0.8 chrY 390026 390266 (3277086) C MAX_I-int LTR/Pao (1657) 6257 5995 121103 27 18.8 8.7 0.0 chrY 390301 390369 (3276983) C MAX_I-int LTR/Pao (4484) 3430 3356 121103 136 15.2 10.7 3.3 chrY 390398 390594 (3276758) C MAX_I-int LTR/Pao (5210) 2704 2494 121103 307 16.0 5.5 0.0 chrY 390865 391226 (3276126) + FW2_DM LINE/Jockey 1174 1555 (2406) 121104 195 13.1 0.6 3.8 chrY 391235 391477 (3275875) + FW2_DM LINE/Jockey 3085 3295 (666) 121105 375 33.2 5.5 14.0 chrY 391480 392275 (3275077) + Copia_I-int LTR/Copia 905 1641 (2952) 121106 165 20.2 1.5 1.5 chrY 392276 392481 (3274871) + Copia_I-int LTR/Copia 2053 2258 (2335) 121106 67 30.9 10.2 5.6 chrY 392954 393090 (3274262) + Copia_I-int LTR/Copia 1095 1237 (3356) 121107 398 4.7 4.0 0.2 chrY 393093 393494 (3273858) + DIVER2_I-int LTR/Pao 688 1104 (3043) 121108 116 39.8 16.2 2.2 chrY 394125 394525 (3272827) + DIVER2_I-int LTR/Pao 1907 2362 (1785) 121108 60 45.0 2.5 2.2 chrY 395223 395538 (3271814) + DIVER2_I-int LTR/Pao 2658 2974 (1173) 121108 112 5.8 31.4 0.0 chrY 395529 395684 (3271668) + DMCR1A LINE/CR1 1078 1282 (3188) 121109 2025 5.0 5.1 0.1 chrY 395685 397342 (3270010) C Gypsy2-I_DM LTR/Gypsy (2773) 3772 2033 121110 324 5.1 1.4 0.0 chrY 397352 397643 (3269709) C Gypsy2-I_DM LTR/Gypsy (4908) 1637 1342 121110 372 5.5 26.8 0.2 chrY 397649 398148 (3269204) C Gypsy2-I_DM LTR/Gypsy (5320) 1225 593 121110 265 10.4 14.1 0.0 chrY 398149 398418 (3268934) C Gypsy2-LTR_DM LTR/Gypsy (30) 308 1 121110 266 4.3 1.6 1.2 chrY 398426 398683 (3268669) + DMCR1A LINE/CR1 1624 1882 (2588) 121109 435 6.1 0.0 0.0 chrY 398672 399064 (3268288) C DMCR1A LINE/CR1 (942) 3528 3136 121111 667 5.1 1.5 0.3 chrY 399081 399671 (3267681) C DMCR1A LINE/CR1 (1521) 2949 2352 121111 507 32.9 14.3 4.6 chrY 399799 401040 (3266312) C QUASIMODO_I-int LTR/Gypsy (4305) 1755 399 121112 67 23.3 20.5 0.6 chrY 401617 401767 (3265585) C MAX_I-int LTR/Pao (915) 6999 6819 121113 102 14.2 18.7 0.0 chrY 401778 401911 (3265441) C MAX_I-int LTR/Pao (1206) 6708 6550 121113 207 15.7 8.6 0.8 chrY 401922 402165 (3265187) C MAX_I-int LTR/Pao (1657) 6257 5995 121113 85 17.8 4.6 0.7 chrY 402203 402332 (3265020) C MAX_I-int LTR/Pao (4247) 3667 3533 121113 19 25.3 0.0 0.0 chrY 402935 403012 (3264340) + DOC2_DM LINE/Jockey 220 368 (4425) 121114 133 10.9 0.0 1.8 chrY 403088 403255 (3264097) + FW2_DM LINE/Jockey 1 165 (3796) 121115 871 16.8 20.5 0.1 chrY 403258 404430 (3262922) + FW2_DM LINE/Jockey 363 1775 (2186) 121115 499 3.0 0.0 0.2 chrY 404453 404855 (3262497) C STALKER4_LTR LTR/Gypsy (0) 402 1 121116 1977 1.1 0.2 0.0 chrY 404856 406710 (3260642) C STALKER4_I-int LTR/Gypsy (0) 6530 4673 121116 3376 0.7 1.9 0.6 chrY 406709 409560 (3257792) C STALKER4_I-int LTR/Gypsy (2911) 3619 732 121116 105 25.6 18.2 8.2 chrY 409563 409886 (3257466) C STALKER4_I-int LTR/Gypsy (7042) 354 1 121116 27 0.0 0.0 0.0 chrY 409887 409919 (3257433) C STALKER4_I-int LTR/Gypsy (6497) 33 1 121116 494 3.5 0.0 0.2 chrY 409920 410322 (3257030) C STALKER4_LTR LTR/Gypsy (0) 402 1 121116 33 8.8 0.0 0.0 chrY 410323 410379 (3256973) + FW2_DM LINE/Jockey 1775 1831 (2130) 121117 542 16.3 18.7 2.2 chrY 410372 411023 (3256329) + FW2_DM LINE/Jockey 2966 3722 (239) 121117 278 12.0 8.6 6.4 chrY 411268 411614 (3255738) + Gypsy6A_LTR LTR/Gypsy 1 396 (2) 121118 14 18.0 0.0 3.0 chrY 411638 411671 (3255681) + (ACC)n Simple_repeat 1 33 (0) 121119 2 26.8 29.2 7.3 chrY 411704 411816 (3255536) + Gypsy6_I-int LTR/Gypsy 405 540 (5595) 121120 291 27.3 10.8 0.5 chrY 412041 412412 (3254940) + Gypsy6_I-int LTR/Gypsy 910 1319 (5693) 121120 941 16.5 4.2 2.9 chrY 412427 413473 (3253879) + Gypsy6_I-int LTR/Gypsy 1432 2491 (4521) 121120 570 9.7 2.9 0.4 chrY 413471 414018 (3253334) + Gypsy6_I-int LTR/Gypsy 4604 5165 (1847) 121120 385 19.2 6.8 1.5 chrY 414066 414504 (3252848) + Copia_I-int LTR/Copia 154 615 (3978) 121121 217 1.7 0.0 0.0 chrY 414516 414747 (3252605) C STALKER4_I-int LTR/Gypsy (1626) 4904 4673 121122 3550 2.9 2.2 1.8 chrY 414746 418034 (3249318) C STALKER4_I-int LTR/Gypsy (2911) 3619 163 121122 26 0.0 0.0 0.0 chrY 418214 418253 (3249099) C STALKER4_I-int LTR/Gypsy (6490) 40 1 121122 494 3.5 0.0 0.2 chrY 418254 418656 (3248696) C STALKER4_LTR LTR/Gypsy (0) 402 1 121122 33 8.8 0.0 0.0 chrY 418657 418713 (3248639) + FW2_DM LINE/Jockey 1775 1831 (2130) 121123 542 16.3 18.7 2.2 chrY 418706 419357 (3247995) + FW2_DM LINE/Jockey 2966 3722 (239) 121123 278 12.0 8.6 6.4 chrY 419602 419948 (3247404) + Gypsy6A_LTR LTR/Gypsy 1 396 (2) 121124 14 18.0 0.0 3.0 chrY 419972 420005 (3247347) + (ACC)n Simple_repeat 1 33 (0) 121125 289 27.6 10.8 0.5 chrY 420378 420749 (3246603) + Gypsy6_I-int LTR/Gypsy 910 1319 (5693) 121126 960 16.7 3.3 2.9 chrY 420764 421819 (3245533) + Gypsy6_I-int LTR/Gypsy 1432 2491 (4521) 121126 570 9.7 2.9 0.4 chrY 421817 422364 (3244988) + Gypsy6_I-int LTR/Gypsy 4604 5165 (1847) 121126 1532 24.8 6.0 7.1 chrY 422412 424538 (3242814) + Copia_I-int LTR/Copia 154 2258 (2335) 121127 86 30.3 8.2 1.4 chrY 424775 424968 (3242384) + Copia_I-int LTR/Copia 2720 2926 (1667) 121127 14 34.8 1.4 1.4 chrY 424971 425040 (3242312) + Copia_I-int LTR/Copia 3297 3366 (1227) 121127 33 38.6 1.3 13.7 chrY 425012 425314 (3242038) C ACCORD2_I-int LTR/Gypsy (6419) 793 524 121128 189 23.7 11.5 0.0 chrY 425395 425698 (3241654) + Copia_I-int LTR/Copia 3357 3695 (898) 121127 26 0.0 0.0 0.0 chrY 425699 425723 (3241629) + (T)n Simple_repeat 1 25 (0) 121129 2129 10.4 0.7 1.0 chrY 425724 429139 (3238213) C DMRT1B LINE/R1 (12) 5171 1693 121130 103 19.4 5.2 0.0 chrY 429121 429254 (3238098) + Copia_I-int LTR/Copia 3684 3824 (769) 121127 150 30.4 4.9 22.8 chrY 429255 429722 (3237630) + Copia_I-int LTR/Copia 4194 4593 (0) 121127 24 30.0 8.3 0.0 chrY 430057 430116 (3237236) + Copia_I-int LTR/Copia 1173 1237 (3356) 121131 1858 16.8 5.5 2.3 chrY 430119 433192 (3234160) + DIVER2_I-int LTR/Pao 688 5269 (2645) 121132 536 5.4 0.1 0.3 chrY 433191 433693 (3233659) + DIVER2_I-int LTR/Pao 2932 3411 (736) 121132 221 11.8 3.1 0.0 chrY 433667 433920 (3233432) + DIVER2_I-int LTR/Pao 3573 3834 (313) 121132 354 5.1 9.7 1.9 chrY 433927 434266 (3233086) + DIVER2_LTR LTR/Pao 20 385 (0) 121133 722 5.2 2.7 0.0 chrY 434385 435023 (3232329) + DMCR1A LINE/CR1 2873 3528 (942) 121134 264 4.7 1.5 1.5 chrY 435012 435270 (3232082) C DMCR1A LINE/CR1 (2588) 1882 1624 121135 208 21.9 0.4 2.0 chrY 435272 435522 (3231830) + DMLTR5 LTR/Gypsy 1 247 (19) 121136 82 1.2 0.0 0.0 chrY 435524 435604 (3231748) C MICROPIA_LTR LTR/Gypsy (365) 111 31 121137 3032 17.8 0.6 3.6 chrY 435601 439696 (3227656) C MICROPIA_I-int LTR/Gypsy (383) 4603 1 121138 593 1.3 0.0 6.9 chrY 439697 440205 (3227147) C MICROPIA_LTR LTR/Gypsy (0) 476 1 121138 607 0.8 0.2 7.0 chrY 440213 440744 (3226608) + QUASIMODO2-LTR_DM LTR/Gypsy 1 498 (0) 121139 376 0.7 0.3 0.3 chrY 440745 441042 (3226310) + QUASIMODO2-I_DM LTR/Gypsy 1 298 (5202) 121139 25 13.0 8.2 1.5 chrY 441045 441105 (3226247) + (TA)n Simple_repeat 1 65 (0) 121140 722 5.2 2.7 0.0 chrY 441123 441761 (3225591) + DMCR1A LINE/CR1 2873 3528 (942) 121141 201 4.9 15.9 1.5 chrY 441750 441976 (3225376) C DMCR1A LINE/CR1 (2588) 1882 1624 121142 207 22.4 0.4 2.0 chrY 441978 442228 (3225124) + DMLTR5 LTR/Gypsy 1 247 (19) 121143 82 1.2 0.0 0.0 chrY 442230 442310 (3225042) C MICROPIA_LTR LTR/Gypsy (365) 111 31 121144 3032 17.8 0.6 3.6 chrY 442307 446402 (3220950) C MICROPIA_I-int LTR/Gypsy (341) 4135 1 121145 593 1.3 0.0 6.9 chrY 446403 446911 (3220441) C MICROPIA_LTR LTR/Gypsy (0) 476 1 121145 610 0.6 0.2 7.0 chrY 446919 447450 (3219902) + QUASIMODO2-LTR_DM LTR/Gypsy 1 498 (0) 121146 6290 2.0 0.2 0.7 chrY 447451 453427 (3213925) + QUASIMODO2-I_DM LTR/Gypsy 1 5500 (0) 121146 8 29.6 0.0 2.3 chrY 453546 453590 (3213762) + Copia_I-int LTR/Copia 4469 4512 (81) 121147 13 17.2 4.9 2.4 chrY 453941 453981 (3213371) + (TTATA)n Simple_repeat 1 42 (0) 121148 227 4.4 30.4 0.0 chrY 453983 454302 (3213050) + DMCR1A LINE/CR1 1585 2001 (2469) 121149 758 5.3 16.4 0.0 chrY 454303 455016 (3212336) + DMCR1A LINE/CR1 2698 3528 (942) 121149 267 4.3 1.6 1.2 chrY 455005 455262 (3212090) C DMCR1A LINE/CR1 (2588) 1882 1624 121150 287 10.8 6.9 0.7 chrY 455270 455559 (3211793) + Gypsy2-LTR_DM LTR/Gypsy 1 308 (30) 121151 452 4.3 18.4 0.0 chrY 455560 456093 (3211259) + Gypsy2-I_DM LTR/Gypsy 593 1224 (5321) 121151 313 2.8 4.6 0.0 chrY 456100 456382 (3210970) + Gypsy2-I_DM LTR/Gypsy 1342 1637 (4908) 121151 1924 5.1 6.9 0.1 chrY 456386 457992 (3209360) + Gypsy2-I_DM LTR/Gypsy 2026 3742 (2803) 121151 242 6.2 10.4 0.0 chrY 457992 458232 (3209120) + Gypsy2-I_DM LTR/Gypsy 4000 4265 (2280) 121151 9 8.8 0.0 0.0 chrY 458229 458262 (3209090) + Gypsy2-I_DM LTR/Gypsy 4575 4608 (1937) 121151 248 7.3 6.8 0.0 chrY 458273 458520 (3208832) C DMCR1A LINE/CR1 (2889) 1581 1317 121150 40 10.2 0.0 1.4 chrY 458514 458583 (3208769) C DMCR1A LINE/CR1 (3384) 1086 1018 121150 23 4.3 2.1 0.0 chrY 458582 458628 (3208724) C G3_DM LINE/Jockey (4557) 48 1 121152 14 7.0 0.0 11.8 chrY 458837 458874 (3208478) + A-rich Low_complexity 1 34 (0) 121153 381 33.4 14.3 0.1 chrY 458936 459554 (3207798) C DIVER2_I-int LTR/Pao (247) 3900 3153 121154 46 42.8 2.9 0.7 chrY 459570 459708 (3207644) C DIVER2_I-int LTR/Pao (1142) 3005 2864 121154 1620 5.0 7.8 0.2 chrY 459700 461062 (3206290) + Gypsy2-I_DM LTR/Gypsy 2306 3772 (2773) 121155 112 5.8 31.4 0.0 chrY 461063 461218 (3206134) C DMCR1A LINE/CR1 (3188) 1282 1078 121156 59 45.0 1.3 0.9 chrY 461209 461524 (3205828) C DIVER2_I-int LTR/Pao (1173) 2974 2658 121154 5 41.3 1.4 0.0 chrY 461931 462068 (3205284) C DIVER2_I-int LTR/Pao (2588) 3055 2916 121157 116 39.8 16.3 2.2 chrY 462213 462610 (3204742) C DIVER2_I-int LTR/Pao (1788) 2359 1907 121157 396 5.0 4.0 0.2 chrY 463249 463652 (3203700) C DIVER2_I-int LTR/Pao (3041) 1106 688 121157 67 30.9 10.2 5.6 chrY 463655 463791 (3203561) C Copia_I-int LTR/Copia (3356) 1237 1095 121158 1603 24.3 4.6 7.1 chrY 464264 466419 (3200933) C Copia_I-int LTR/Copia (2335) 2258 154 121159 568 9.9 2.9 0.4 chrY 466467 467014 (3200338) C Gypsy6_I-int LTR/Gypsy (1847) 5165 4604 121160 536 16.5 0.8 3.3 chrY 467012 467601 (3199751) C Gypsy6_I-int LTR/Gypsy (4521) 2491 1916 121160 680 3.5 23.8 0.0 chrY 467781 468427 (3198925) C FB4_DM DNA/TcMar-Tc1 (3288) 801 1 121161 88 3.2 0.0 0.0 chrY 469272 469364 (3197988) C G3_DM LINE/Jockey (4512) 93 1 121162 7 13.2 2.0 10.6 chrY 469398 469448 (3197904) C G3_DM LINE/Jockey (4552) 53 7 121163 13 12.7 2.6 5.4 chrY 469450 469487 (3197865) + A-rich Low_complexity 1 37 (0) 121164 39 14.6 20.7 0.0 chrY 469672 469753 (3197599) + DMRT1A LINE/R1 4 102 (5081) 121165 77 7.5 9.4 0.0 chrY 469751 469856 (3197496) + DMRT1A LINE/R1 261 376 (4807) 121165 351 6.8 6.4 0.9 chrY 469855 470182 (3197170) + DMRT1A LINE/R1 483 828 (4355) 121165 1554 7.8 26.0 0.1 chrY 470180 471777 (3195575) + DMRT1A LINE/R1 1078 3088 (2095) 121165 377 24.7 8.0 1.1 chrY 471756 472270 (3195082) C MICROPIA_I-int LTR/Gypsy (1561) 2915 2366 121166 178 18.6 0.0 0.0 chrY 472268 472493 (3194859) C MICROPIA_I-int LTR/Gypsy (2832) 1644 1419 121166 12 9.7 29.0 9.9 chrY 472493 472561 (3194791) C MICROPIA_I-int LTR/Gypsy (4395) 81 1 121166 37 37.4 1.6 9.0 chrY 472588 472837 (3194515) C ACCORD2_I-int LTR/Gypsy (6456) 756 524 121167 287 8.2 2.8 2.0 chrY 472842 473146 (3194206) C STALKER4_LTR LTR/Gypsy (121) 281 1 121168 67 13.0 2.6 9.8 chrY 473147 473299 (3194053) C STALKER4_I-int LTR/Gypsy (0) 6530 6388 121168 31 12.1 1.5 13.3 chrY 473330 473396 (3193956) + ROVER-LTR_DM LTR/Gypsy 308 367 (0) 121169 85 6.7 31.9 6.7 chrY 473397 473540 (3193812) + ROVER-I_DM LTR/Gypsy 1 178 (6406) 121169 549 4.8 4.1 0.0 chrY 473671 474154 (3193198) + DMCR1A LINE/CR1 2561 3064 (1406) 121170 105 4.8 4.6 3.0 chrY 474157 474286 (3193066) + DMCR1A LINE/CR1 3434 3565 (905) 121170 638 6.5 16.6 0.7 chrY 474286 474949 (3192403) + DMCR1A LINE/CR1 3702 4470 (0) 121170 661 15.9 7.0 1.9 chrY 474943 475710 (3191642) + MICROPIA_I-int LTR/Gypsy 3142 3948 (528) 121171 104 12.0 6.8 0.0 chrY 475721 475837 (3191515) + MICROPIA_I-int LTR/Gypsy 4126 4250 (226) 121171 318 17.3 14.7 4.3 chrY 475840 476261 (3191091) + Gypsy_LTR LTR/Gypsy 1 464 (18) 121172 139 11.3 32.4 1.3 chrY 476281 476459 (3190893) + MICROPIA_I-int LTR/Gypsy 4243 4476 (0) 121171 277 14.2 8.6 8.6 chrY 476463 476846 (3190506) + MICROPIA_LTR LTR/Gypsy 93 476 (0) 121173 63 24.3 20.9 2.4 chrY 476847 476928 (3190424) C DNAREP1_DM RC/Helitron (478) 116 10 121174 12 21.6 2.5 2.5 chrY 477485 477524 (3189828) + A-rich Low_complexity 1 40 (0) 121175 401 7.1 0.3 3.0 chrY 478056 478432 (3188920) + ROVER-LTR_DM LTR/Gypsy 1 367 (0) 121176 802 8.9 2.0 8.5 chrY 478432 479782 (3187570) + ROVER-I_DM LTR/Gypsy 1 1396 (5188) 121176 2679 12.1 0.9 0.0 chrY 479777 482273 (3185079) + ROVER-I_DM LTR/Gypsy 1776 4295 (2289) 121176 1510 12.8 0.7 0.9 chrY 482275 485215 (3182137) + ROVER-I_DM LTR/Gypsy 3532 6584 (0) 121177 431 23.1 18.6 1.4 chrY 485353 485488 (3181864) C QUASIMODO_I-int LTR/Gypsy (223) 5837 5661 121178 30 4.8 2.2 2.2 chrY 485489 485533 (3181819) + (TTA)n Simple_repeat 1 45 (0) 121179 431 23.1 18.6 1.4 chrY 485534 486301 (3181051) C QUASIMODO_I-int LTR/Gypsy (400) 5660 4781 121178 95 21.6 5.9 0.5 chrY 486311 486496 (3180856) C QUASIMODO_I-int LTR/Gypsy (1447) 4613 4418 121178 6 33.1 22.4 0.6 chrY 486491 486633 (3180719) C QUASIMODO_I-int LTR/Gypsy (1826) 4234 4061 121178 40 38.1 0.0 0.0 chrY 486609 486742 (3180610) + FROGGER_I-int LTR/Copia 662 795 (1282) 121180 178 38.9 19.0 1.4 chrY 486794 487481 (3179871) + Copia1-I_DM LTR/Copia 3239 4046 (78) 121181 184 16.1 24.1 0.0 chrY 487537 487785 (3179567) C DNAREP1_DM RC/Helitron (284) 310 2 121182 14 18.6 8.2 0.0 chrY 487882 487930 (3179422) + (TATAA)n Simple_repeat 1 53 (0) 121183 12 26.8 0.0 5.8 chrY 488005 488059 (3179293) + A-rich Low_complexity 1 52 (0) 121184 403 13.4 9.2 10.3 chrY 492159 492758 (3174594) + IDEFIX_LTR LTR/Gypsy 1 594 (0) 121185 1507 14.8 11.1 1.2 chrY 492969 494609 (3172743) C IDEFIX_I-int LTR/Gypsy (3461) 2167 365 121186 363 5.7 1.8 0.0 chrY 494610 494996 (3172356) C TRANSIB1 DNA/CMC-Transib (0) 3014 2621 121187 90 4.8 1.9 0.0 chrY 495001 495103 (3172249) C TRANSIB1 DNA/CMC-Transib (504) 2510 2406 121187 225 21.8 4.3 1.6 chrY 495086 495388 (3171964) C IDEFIX_I-int LTR/Gypsy (5316) 312 2 121186 206 9.6 0.4 10.3 chrY 495783 496037 (3171315) C IDEFIX_LTR LTR/Gypsy (72) 522 291 121188 841 5.9 15.4 0.0 chrY 496013 496839 (3170513) + TRANSIB2 DNA/CMC-Transib 514 1467 (1377) 121189 406 0.9 2.7 0.0 chrY 496853 497185 (3170167) C DM1731_I-int LTR/Copia (760) 3216 2875 121190 127 32.9 11.5 1.2 chrY 497647 498067 (3169285) C BURDOCK_I-int LTR/Gypsy (4378) 1337 631 121191 15 7.5 0.0 6.7 chrY 498420 498451 (3168901) + (TTTC)n Simple_repeat 1 30 (0) 121192 50 14.7 47.4 0.0 chrY 498763 498857 (3168495) C DNAREP1_DM RC/Helitron (454) 140 1 121193 265 8.5 17.8 0.1 chrY 499374 499971 (3167381) C IDEFIX_LTR LTR/Gypsy (0) 594 99 121194 269 5.2 19.8 0.9 chrY 499964 500407 (3166945) + DMCR1A LINE/CR1 891 1418 (3052) 121195