view test-data/chrY_paired_fraction_counts.tab @ 14:bf866bedd4b4 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 205141a3f695f202d5c3e01e6ab3b2b869fe62b5
author artbio
date Sat, 20 Apr 2024 12:13:52 +0000
parents 530626b0757c
children
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A-rich	Low_complexity	Low_complexity	0.0
ACCORD2_I-int	LTR	Gypsy	0.0
ACCORD2_LTR	LTR	Gypsy	0.0
ACCORD_I-int	LTR	Gypsy	0.0
BARI1	DNA	TcMar-Tc1	0.0
BATUMI_LTR	LTR	Pao	0.0
BS	LINE	Jockey	0.0
BS2	LINE	Jockey	50.0
BURDOCK_I-int	LTR	Gypsy	0.0
Baggins1	LINE	LOA	0.0
Bica_I-int	LTR	Gypsy	36.0
Bica_LTR	LTR	Gypsy	1.0
CIRCE	LTR	Gypsy	0.0
Chouto_I-int	LTR	Gypsy	3.0
Copia1-I_DM	LTR	Copia	0.0
Copia_I-int	LTR	Copia	20956.0
Copia_LTR	LTR	Copia	270.0
DIVER2_I-int	LTR	Pao	0.0
DIVER2_LTR	LTR	Pao	1.0
DM1731_I-int	LTR	Copia	0.0
DM1731_LTR	LTR	Copia	0.0
DM176_I-int	LTR	Gypsy	0.0
DM412	LTR	Gypsy	2.0
DM412B_LTR	LTR	Gypsy	0.0
DMCR1A	LINE	CR1	0.0
DMLTR5	LTR	Gypsy	0.0
DMRT1A	LINE	R1	0.0
DMRT1B	LINE	R1	106.0
DMRT1C	LINE	R1	0.0
DNAREP1_DM	RC	Helitron	0.0
DOC2_DM	LINE	Jockey	0.0
DOC3_DM	LINE	Jockey	0.0
FB4_DM	DNA	TcMar-Tc1	4.0
FROGGER_I-int	LTR	Copia	0.0
FW2_DM	LINE	Jockey	0.0
G3_DM	LINE	Jockey	0.0
G5A_DM	LINE	Jockey	0.0
G5_DM	LINE	Jockey	0.0
G6_DM	LINE	Jockey	0.0
GA-rich	Low_complexity	Low_complexity	0.0
GTWIN_I-int	LTR	Gypsy	9.0
G_DM	LINE	Jockey	0.0
Gypsy11_I-int	LTR	Gypsy	0.0
Gypsy11_LTR	LTR	Gypsy	0.0
Gypsy12_LTR	LTR	Gypsy	0.0
Gypsy2-I_DM	LTR	Gypsy	0.0
Gypsy2-LTR_DM	LTR	Gypsy	0.0
Gypsy3_LTR	LTR	Gypsy	0.0
Gypsy4_I-int	LTR	Gypsy	0.0
Gypsy5_I-int	LTR	Gypsy	0.0
Gypsy6A_LTR	LTR	Gypsy	1.0
Gypsy6_I-int	LTR	Gypsy	26.0
Gypsy8_I-int	LTR	Gypsy	0.0
Gypsy8_LTR	LTR	Gypsy	0.0
Gypsy9_I-int	LTR	Gypsy	0.0
Gypsy_I-int	LTR	Gypsy	24.0
Gypsy_LTR	LTR	Gypsy	0.0
HELENA_RT	LINE	Jockey	0.0
HETA	LINE	Jockey	24.0
HMSBEAGLE_I-int	LTR	Gypsy	0.0
IDEFIX_I-int	LTR	Gypsy	1.0
IDEFIX_LTR	LTR	Gypsy	0.0
Invader1_I-int	LTR	Gypsy	0.0
Invader1_LTR	LTR	Gypsy	0.0
Invader2_I-int	LTR	Gypsy	0.0
Invader4_I-int	LTR	Gypsy	0.0
Invader4_LTR	LTR	Gypsy	0.0
Invader5_I-int	LTR	Gypsy	0.0
Invader5_LTR	LTR	Gypsy	0.0
Invader6_I-int	LTR	Gypsy	0.0
Invader6_LTR	LTR	Gypsy	0.0
MAX_I-int	LTR	Pao	22.0
MAX_LTR	LTR	Pao	0.0
MDG1_I-int	LTR	Gypsy	0.0
MDG1_LTR	LTR	Gypsy	0.0
MDG3_I-int	LTR	Gypsy	92.0
MDG3_LTR	LTR	Gypsy	1.0
MICROPIA_I-int	LTR	Gypsy	40.0
MICROPIA_LTR	LTR	Gypsy	2.0
Mariner2_DM	DNA	TcMar-Tc1	0.0
NINJA_I-int	LTR	Pao	0.0
NOMAD_I-int	LTR	Gypsy	0.0
PROTOP_A	DNA	P	27.0
PROTOP_B	DNA	P	0.0
QUASIMODO2-I_DM	LTR	Gypsy	24.0
QUASIMODO2-LTR_DM	LTR	Gypsy	0.0
QUASIMODO_I-int	LTR	Gypsy	85.5
QUASIMODO_LTR	LTR	Gypsy	14.5
R1_DM	LINE	R1	0.0
ROOA_I-int	LTR	Pao	0.0
ROOA_LTR	LTR	Pao	0.0
ROVER-I_DM	LTR	Gypsy	286.0
ROVER-LTR_DM	LTR	Gypsy	2.0
S2_DM	DNA	TcMar-Tc1	0.0
STALKER4_I-int	LTR	Gypsy	133.0
STALKER4_LTR	LTR	Gypsy	22.0
S_DM	DNA	TcMar-Tc1	4.0
Stalker2_I-int	LTR	Gypsy	69.0
Stalker2_LTR	LTR	Gypsy	2.0
TART-A	LINE	Jockey	4.0
TART_B1	LINE	Jockey	13.0
TC1-2_DM	DNA	TcMar-Tc1	0.0
TC1_DM	DNA	TcMar-Tc1	0.0
TLD2	LTR	Gypsy	0.0
TRANSIB1	DNA	CMC-Transib	0.0
TRANSIB2	DNA	CMC-Transib	18.0
ZAM_I-int	LTR	Gypsy	0.0
_AACACA_n	Simple_repeat	Simple_repeat	0.0
_AAT_n	Simple_repeat	Simple_repeat	0.0
_ACAATAG_n	Simple_repeat	Simple_repeat	0.0
_ACC_n	Simple_repeat	Simple_repeat	0.0
_AGAGAAG_n	Simple_repeat	Simple_repeat	2.5
_AGAGA_n	Simple_repeat	Simple_repeat	33.5
_ATAAT_n	Simple_repeat	Simple_repeat	0.0
_ATATATT_n	Simple_repeat	Simple_repeat	0.0
_ATATTAT_n	Simple_repeat	Simple_repeat	0.0
_ATTTTT_n	Simple_repeat	Simple_repeat	0.0
_ATT_n	Simple_repeat	Simple_repeat	0.0
_AT_n	Simple_repeat	Simple_repeat	0.0
_A_n	Simple_repeat	Simple_repeat	0.0
_CATA_n	Simple_repeat	Simple_repeat	0.0
_CTTTT_n	Simple_repeat	Simple_repeat	0.0
_GAGAA_n	Simple_repeat	Simple_repeat	38.0
_GCCTTT_n	Simple_repeat	Simple_repeat	3.0
_TAATAT_n	Simple_repeat	Simple_repeat	0.0
_TAATA_n	Simple_repeat	Simple_repeat	0.0
_TATAAAA_n	Simple_repeat	Simple_repeat	0.0
_TATAA_n	Simple_repeat	Simple_repeat	0.0
_TATCATG_n	Simple_repeat	Simple_repeat	0.0
_TA_n	Simple_repeat	Simple_repeat	0.0
_TGTTG_n	Simple_repeat	Simple_repeat	0.0
_TTATATA_n	Simple_repeat	Simple_repeat	0.0
_TTATAT_n	Simple_repeat	Simple_repeat	0.0
_TTATA_n	Simple_repeat	Simple_repeat	0.0
_TTA_n	Simple_repeat	Simple_repeat	0.0
_TTCTT_n	Simple_repeat	Simple_repeat	0.0
_TTC_n	Simple_repeat	Simple_repeat	0.0
_TTTAT_n	Simple_repeat	Simple_repeat	0.0
_TTTA_n	Simple_repeat	Simple_repeat	0.0
_TTTC_n	Simple_repeat	Simple_repeat	0.0
_TTTGA_n	Simple_repeat	Simple_repeat	0.0
_TTTTAG_n	Simple_repeat	Simple_repeat	0.0
_TTTTCTT_n	Simple_repeat	Simple_repeat	0.0
_TTTTC_n	Simple_repeat	Simple_repeat	0.0
_T_n	Simple_repeat	Simple_repeat	0.0