# HG changeset patch # User artbio # Date 1544550187 18000 # Node ID 5dd4791c7b70cc1273812763f8edc50936e20252 # Parent 308591fd36e5a9c63ec7cce359a92b362ed9ca89 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit ccf4b178d13aeedf7214f2400e7411bcfa3e73b4 diff -r 308591fd36e5 -r 5dd4791c7b70 edgeR_repenrich.R --- a/edgeR_repenrich.R Tue Dec 11 11:39:22 2018 -0500 +++ b/edgeR_repenrich.R Tue Dec 11 12:43:07 2018 -0500 @@ -203,7 +203,7 @@ types <- with(results, reorder(type, -logFC, median)) boxplot(logFC ~ types, data=results, outline=FALSE, horizontal=TRUE, las=2, xlab="log2(Fold Change)", main=paste0(allcontrasts, ", by Type"), yaxt="n") - axis(2, cex.axis=(1*11)/(length(levels(types))), + axis(2, cex.axis=(1*28)/(length(levels(types))), at=seq(from=1, to=length(levels(types))), labels=levels(types), las=2) abline(v=0) diff -r 308591fd36e5 -r 5dd4791c7b70 edger-repenrich.xml --- a/edger-repenrich.xml Tue Dec 11 11:39:22 2018 -0500 +++ b/edger-repenrich.xml Tue Dec 11 12:43:07 2018 -0500 @@ -1,4 +1,4 @@ - + Determines differentially expressed features from RepEnrich counts bioconductor-edger diff -r 308591fd36e5 -r 5dd4791c7b70 test-data/edgeR_plots.pdf Binary file test-data/edgeR_plots.pdf has changed