Mercurial > repos > artbio > repenrich

changeset 3:1c9810ba0638 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit 50a80e047ef74664d616a332f93c84f27cb6b7a0
author artbio
date Fri, 22 Sep 2017 03:19:23 -0400
parents 15e3e29f310e
children d1f7ab78f7b5
files edger-repenrich.xml repenrich.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/edger-repenrich.xml	Tue Sep 19 17:23:15 2017 -0400
+++ b/edger-repenrich.xml	Fri Sep 22 03:19:23 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="edger-repenrich" name="edgeR-repenrich" version="1.4.2">
+<tool id="edger-repenrich" name="edgeR-repenrich" version="1.4.3">
     <description>Determines differentially expressed features from RepEnrich counts</description>
     <requirements>
         <requirement type="package" version="3.16.5">bioconductor-edger</requirement>
@@ -72,13 +72,13 @@
     ]]>
     </command>
     <inputs>
-            <param name="factorName" type="text" value="FactorName" label="Specify a factor name, e.g. genotype or age or drug_x"
+            <param name="factorName" type="text" value="FactorName"  label="Specify a factor name, e.g. genotype or age or drug_x"
                 help="Only letters, numbers and underscores will be retained in this field">
                 <sanitizer>
                     <valid initial="string.letters,string.digits"><add value="_" /></valid>
                 </sanitizer>
             </param>
-            <param name="factorLevel_A" type="text" value="FactorLevel1" label="Specify a factor level, typical values could be 'wildtype' or 'control'"
+            <param name="factorLevel_A" type="text" value="FactorLevel1" label="Specify a factor level, typical values could be 'mutant' or 'Drug_X'"
                    help="Only letters, numbers and underscores will be retained in this field">
                 <sanitizer>
                     <valid initial="string.letters,string.digits"><add value="_" /></valid>
@@ -86,7 +86,7 @@
             </param>
             <param name="countsFiles_A" type="data" format="tabular" multiple="true" label="Counts file(s)" help="Count files must have been generated by repenrich" />
             <param name="alignmentFiles_A" type="data" format="tabular" multiple="true" label="Number of aligned reads file(s)" help="files of total aligned reads generated by repenrich"/>
-            <param name="factorLevel_B" type="text" value="FactorLevel2" label="Specify a factor level, typical values could be 'mutant' or 'Drug_X'"
+            <param name="factorLevel_B" type="text" value="FactorLevel2" label="Specify a factor level, typical values could be 'wildtype' or 'control'"
                    help="Only letters, numbers and underscores will be retained in this field">
                 <sanitizer>
                     <valid initial="string.letters,string.digits"><add value="_" /></valid>
--- a/repenrich.xml	Tue Sep 19 17:23:15 2017 -0400
+++ b/repenrich.xml	Fri Sep 22 03:19:23 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="repenrich" name="RepEnrich" version="1.4.2">
+<tool id="repenrich" name="RepEnrich" version="1.4.3">
     <description>Repeat Element Profiling</description>
     <requirements>
         <requirement type="package" version="1.2.0">bowtie</requirement>