--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Normalized_counts_file.tab	Sat Apr 20 11:56:53 2024 +0000
@@ -0,0 +1,211 @@
+Tag	Mutant_1	Mutant_2	Wildtype_1	Wildtype_2
+5S_DM	849.032562508469	1219.51278117852	942.018870038676	1731.10179734754
+ACCORD_I-int	550.241763382128	597.402426091072	406.06575638995	360.646207780737
+ACCORD_LTR	105.944672939771	101.184852080418	43.9916996456244	36.6476515989663
+ACCORD2_I-int	306.569015620654	352.970414234016	437.53100596699	409.454216501178
+ACCORD2_LTR	28.5648295394573	22.3547929014877	35.0442353109211	31.9834050318251
+ALA_DM	1.20696462842777	0	0.745622027891939	0.999481407244536
+ARS406_DM	101.250921606996	67.6526627281864	83.9570403406324	119.771188634804
+Baggins1	737.589495150305	538.868165730598	765.9029470506	648.496853067163
+BARI_DM	149.79772110598	153.542130191797	147.633161522604	150.255371555762
+BARI1	49.6196569464751	36.76775148271	58.9041402034632	53.6388355221234
+BATUMI_I-int	633.388215562708	541.809585849214	953.65057367379	797.75274321568
+BATUMI_LTR	46.6692989658739	49.7100000046239	82.6149206904269	67.1318345199247
+BEL_I-int	3934.43647431266	4468.60544420264	3542.74850332576	3641.44392706093
+BEL_LTR	124.317356728061	177.955917176316	130.483854881089	142.925841235969
+Bica_I-int	209.34130944175	181.779763330518	276.178399131174	231.546526011651
+Bica_LTR	16.4951832551796	19.7075147947326	20.8774167809743	20.8225293175945
+BLASTOPIA_I-int	1847.99695330386	3542.94053287393	1537.3234971076	1589.17543751881
+BLASTOPIA_LTR	139.203253812003	270.316508900884	82.0184230681133	79.6253521104813
+BLOOD_I-int	3669.4406847823	3906.20591752311	3329.9479765654	2868.8447992609
+BLOOD_LTR	170.182012608316	159.42497042903	111.545055372634	124.268854967404
+BS	697.35734086938	1216.27721904805	1088.01166309992	833.067752938321
+BS2	699.234841402489	613.580236743464	834.35104921108	831.401950592913
+BS3_DM	114.125210976893	133.246331373341	186.703755784142	146.090865692243
+BS4_DM	1.07285744749135	6.76526627281864	5.07022978966519	3.49818492535588
+BURDOCK_I-int	696.016269060015	656.524970475269	465.119020998992	555.045341489799
+BURDOCK_LTR	72.8201992484756	56.7694082893042	42.7987044009973	61.6346867800797
+Chimpo_I-int	183.190409159149	108.832544388822	192.072234384964	176.575048613201
+Chimpo_LTR	14.3494683601968	9.70668639143544	14.0176941243685	19.9896281448907
+Chouto_I-int	165.085939732732	152.36556214435	252.020245427475	217.220625841146
+Chouto_LTR	21.7253633116999	46.7685798860071	44.588197267938	46.8090459059524
+CIRCE	492.977997122277	461.802958622837	561.751635813787	553.546119378932
+Copia_I-int	6824.4462234925	25655.0662745757	4117.62308683045	4453.18940997803
+Copia_LTR	350.287956605927	904.486686474666	209.96716305437	188.069084796513
+Copia1-I_DM	549.839441839318	572.400355082829	535.058367215256	586.029265114379
+Copia1-LTR_DM	80.4643085618515	114.421242614193	114.974916700937	94.2844127500679
+Copia2_I-int	484.663351904219	556.516686442298	629.00674272964	575.534710338312
+Copia2_LTR_DM	100.178064159505	135.305325456373	132.869845370344	80.9579939868074
+DIVER_I-int	3318.07987072888	3456.4627813866	1965.161416712	2603.14932516839
+DIVER_LTR	73.3566279722213	96.478579890631	69.9393462162639	71.4629206179843
+DIVER2_I-int	864.454888316158	784.770887646962	996.001904858053	937.346979760834
+DIVER2_LTR	86.9014532467996	70.5940828468032	118.255653623662	89.1204254793044
+DM1731_I-int	2525.10410985184	2021.63804752533	772.464420896049	813.07812479343
+DM1731_LTR	170.852548512998	94.4195858075992	86.0447820187298	73.2953031979326
+DM176_I-int	633.790537105517	675.93834325814	540.874219032813	468.590199763147
+DM176_LTR	75.1000213243947	97.0668639143544	134.062840614971	145.257964519539
+DM297_I-int	11048.6883158088	12561.334616553	1765.18558883138	1920.67010425492
+DM297_LTR	821.808804778376	740.061301843987	222.04623990622	246.205586651237
+DM412	5859.00862793122	6914.69041484437	3591.81043276105	3925.62980718745
+DM412B_LTR	751.938963510502	882.720177596901	459.004920370278	484.7484825136
+DMCR1A	2345.40048739703	2374.31431974748	3039.15538568754	2991.28127164835
+DMLTR5	25.3462571969832	27.6493491149979	24.0090292981204	26.652837526521
+DMRP1	39.5616183762436	42.3564497080819	39.0705942615376	37.8137132407516
+DMRPR	29.6376869869486	40.0033136131885	19.0879239140336	31.1505038591214
+DMRT1A	509.204966015583	363.265384649175	664.498351257296	589.694030274276
+DMRT1B	1207.36694997058	1210.39437881081	1447.40148054383	1185.88468969564
+DMRT1C	255.742394045751	197.075147947326	377.284746113321	347.652949486558
+DMTOM1_LTR	188.152374853796	134.717041432649	149.720903200701	168.579197355245
+DNAREP1_DM	10306.2709621447	10869.4297643247	10113.7663107318	10653.4723198195
+DOC	3900.10503599294	6382.88165739845	2666.79174495831	2734.24796975197
+DOC2_DM	604.957493204187	603.579408340167	661.814111956885	755.941104345951
+DOC3_DM	1484.16417142335	1531.00917174004	1780.69452701153	1775.57871996992
+DOC4_DM	138.130396364512	193.545443804985	121.238141735229	138.261594668827
+DOC5_DM	240.454175419	221.194792919983	452.890819741564	363.64465200247
+DOC6_DM	230.396136848768	225.90106510977	187.74762662319	206.559490830537
+FB4_DM	1051.40029854153	984.787455712904	1066.09037547989	1155.90024747831
+FROGGER_I-int	144.165219506651	160.601538476477	240.239417386783	226.715699209969
+FROGGER_LTR	11.3991103795956	16.7660946761158	6.1141006287139	8.99533266520082
+FTZ_DM	0	0	0	0
+FUSHI_DM	0	0	0	0
+FW2_DM	2376.78156773616	2607.27479314193	2122.63678900277	2306.63650768585
+FW3_DM	86.7673460658632	110.597396459992	123.92238103564	152.08775413571
+G_DM	1468.20541689192	1347.75869835022	1327.95283167554	1338.47218453497
+G2_DM	165.622368456478	224.724497062323	198.037210608099	188.568825500136
+G3_DM	64.3714468494812	73.53550296542	118.852151245975	92.6186104046603
+G4_DM	298.12026322166	360.323964530558	546.988319661527	567.538859080356
+G5_DM	363.966889061442	382.384615420184	387.872578909387	424.946178313468
+G5A_DM	211.621131517669	171.190650903498	269.020427663412	265.695474092506
+G6_DM	385.424038011269	231.19562132328	719.823505726878	578.533154560045
+G7_DM	261.374895645081	122.951360958182	24.1581537036988	16.3248629849941
+GTWIN_I-int	1014.92314532682	861.836094754722	812.429761591057	841.896505368981
+GTWIN_LTR	339.69348931195	275.905207126256	89.1763945358759	77.792969530533
+Gypsy_I-int	3229.56913131085	3282.91899438821	1017.32669485576	938.513041402619
+Gypsy_LTR	505.718179311237	510.924674603738	194.756473685375	152.754075073873
+Gypsy1-I_DM	4956.86962177192	6692.6131958888	1216.85514951964	1048.95573690314
+Gypsy1-LTR_DM	192.041483100952	169.425798832328	155.38763061268	132.431286459901
+Gypsy10_I-int	299.863656573833	272.669644995777	336.722907796	321.499852663659
+Gypsy10_LTR	48.6809066799201	47.6510059215921	46.8250633516138	61.3015263109982
+Gypsy11_I-int	65.3101971160361	49.4158579927622	100.062476143098	93.2849313428233
+Gypsy11_LTR	21.3230417688906	14.1188165693606	19.982670347504	24.8204549465726
+Gypsy12_I-int	670.804119043969	725.354201250903	1458.13843774548	1603.66791792386
+Gypsy12_LTR	1015.45957405057	788.300591789302	938.290759899216	988.487111764846
+Gypsy12A_LTR	326.685092761117	316.790946775029	456.171556664288	373.472885840375
+Gypsy2_I-int	566.736946637307	456.508402409327	475.706853795057	575.20154986923
+Gypsy2_LTR	116.539140233748	73.53550296542	71.4305902720478	80.7914137522666
+Gypsy2-I_DM	988.906352225155	781.829467528345	686.867012094054	648.996593770785
+Gypsy2-LTR_DM	154.893793981564	113.244674566747	144.054175788723	114.940361833122
+Gypsy3_I-int	773.262005279393	664.172662783673	506.87385456094	458.595385690701
+Gypsy3_LTR	91.3269902177014	62.3581065146761	84.4044135573675	74.4613648397179
+Gypsy4_I-int	1758.6815708002	1573.07147943626	1806.34392477101	1675.13083854184
+Gypsy4_LTR	52.3018005652035	64.1229585858462	40.8600871284783	32.3165655009067
+Gypsy5_I-int	380.059750773812	304.7311242887	365.056544855893	364.144392706093
+Gypsy5_LTR	67.3218048300824	95.8902958669076	97.0799880315305	75.1276857778809
+Gypsy6_I-int	1526.27382623739	1106.8563906355	1116.79267337655	1123.75026221194
+Gypsy6_LTR	190.834518472524	223.547929014877	63.82524558755	80.6248335177259
+Gypsy6A_LTR	106.34699448258	64.4171005977079	92.0097582418653	95.4504743918532
+Gypsy7_I-int	155.832544248119	218.253372801366	187.300253406455	168.079456651623
+Gypsy7_LTR	10.7285744749135	11.4715384626055	16.7019334247794	14.4924804050458
+Gypsy8_I-int	560.031587590486	366.795088791515	717.139266426467	680.147097629907
+Gypsy8_LTR	196.735234433727	142.953017764776	195.502095713266	206.726071065078
+Gypsy9_I-int	57.5319806217238	55.2986982299958	75.1587004115075	78.9590311723183
+Gypsy9_LTR	8.31464521805799	2.35313609489344	7.60534468449778	6.99636985071175
+HELENA_RT	125.256106994615	122.363076934459	97.3782368426873	104.445807057054
+Helitron1_DM	0	0	0.447373216735164	0.999481407244536
+HETA	3011.91317665104	3037.60455649557	3433.58943844238	4064.05798209082
+HMSBEAGLE_I-int	1054.48476370306	1199.80526638379	1079.51157198195	984.156025666786
+HOBO	586.718916596834	623.2869231349	750.244884464869	733.619352917489
+I_DM	1539.41632996916	3279.38929024587	1191.05662735458	1168.22718483432
+IDEFIX_I-int	968.522060722819	966.55065097748	923.527443746956	924.020560997573
+IDEFIX_LTR	340.364025216632	297.67171600402	326.731572622248	307.173952493154
+Invader1_I-int	401.382792542702	520.04307697145	273.195911019607	278.522152152144
+Invader1_LTR	338.620631864458	559.752248572777	498.970261065286	321.6664328982
+Invader2_I-int	800.619870190422	928.606331447323	1017.47581926134	917.857092319565
+Invader2_LTR	55.9226944504868	62.6522485265378	73.3692075445668	78.6258707032368
+Invader3_I-int	591.546775110545	594.755147984317	695.963600834336	620.011632960694
+Invader3_LTR	67.8582335538281	66.7702366926013	97.9747344650008	101.28078260078
+Invader4_I-int	253.194357607959	347.087573996782	214.5900196273	203.061305905182
+Invader4_LTR	217.790061840745	199.722426054081	211.756655921311	204.560528016048
+Invader5_I-int	25.6144715588561	34.4146153878165	62.0357527206093	55.8043785711532
+Invader5_LTR	6.3030375040117	6.76526627281864	10.2895839849088	10.6611350106084
+Invader6_I-int	880.547750028528	970.08035511982	1033.58125506381	1116.25415165761
+Invader6_LTR	41.8414404521628	42.9447337318053	96.7817392203737	97.9491779099645
+IVK_DM	405.674222332668	520.337218983312	499.417634282021	486.580865093548
+Jockey2	244.477390847092	223.547929014877	263.950197873747	264.52941245072
+LINEJ1_DM	3338.06184068841	4688.32952706332	1047.59894918817	1054.28630440844
+LmeSINE1c	84.0852024471348	192.074733745677	89.3255189414543	235.544451640629
+LOOPER1_DM	29.5035798060122	9.11840236771208	122.431136979856	98.1157581445053
+LSU-rRNA_Cel	48774.3793850328	74027.0142672408	77569.7438008989	54459.2431772366
+LSU-rRNA_Dme	748725.487240904	1213784.36549752	545695.261940756	512859.729993525
+LSU-rRNA_Hsa	2.01160771404629	3.23556213047848	0.745622027891939	0
+M4DM	252.121500160468	270.022366889022	257.537848433876	274.857386992247
+Mariner2_DM	146.981470306315	272.375502983916	299.889179618138	265.029153154343
+MAX_I-int	1195.43141086724	1148.62455631986	1848.39700714412	1532.7047380095
+MAX_LTR	128.47467933709	100.890710068556	151.65952047322	125.434916609189
+MDG1_I-int	2186.75169234925	2365.78420140349	2432.9646770114	2288.81242258999
+MDG1_LTR	87.1696676086724	82.653905333132	102.895839849088	96.94969650272
+MDG3_I-int	1053.68012061745	1108.91538471853	804.078794878667	828.070345902098
+MDG3_LTR	124.183249547124	133.540473385203	154.642008584788	141.260038890561
+MICROPIA_I-int	930.837942879685	978.610473463809	1513.46359221506	1724.93832866953
+MICROPIA_LTR	61.6893032307528	43.8271597673903	118.852151245975	143.758742408672
+MINOS	36.6112603956424	27.3552071031362	25.7985221650611	37.6471330062109
+MuDR-1_DEl	4.29142978996541	1.17656804744672	0.894746433470327	1.4992221108668
+NINJA_I-int	492.977997122277	337.086745593485	786.482115020417	750.110796137024
+NINJA_LTR	39.8298327381165	33.5321893522315	73.2200831389884	67.6315752235469
+NOF_FB	30.5764372535036	18.5309467472858	189.686243895709	159.917025159126
+NOMAD_I-int	1557.52079939557	2398.43396472014	2455.92983547047	1931.33123926552
+NOMAD_LTR	101.519135968869	81.4773372856853	92.3080070530221	136.928952792501
+NTS_DM	7515.76874121974	6398.47118402712	9835.35104551699	6031.03739154807
+P-1_DY	1.74339335217345	1.17656804744672	1.1929952446271	0.333160469081512
+PLACW_DM	37.1476891193881	60.0049704197827	22.2195364311798	21.155689786676
+POGO	390.117789344043	303.554556241254	361.924932338747	415.117944475564
+POGON1	85.9627029802447	75.30035503659	49.3601782464464	67.1318345199247
+PROTOP	640.361788971401	605.638402423199	736.972812368393	725.123760955911
+PROTOP_A	598.788562881111	584.75431958102	526.856524908444	563.707513685918
+PROTOP_B	1256.71839255518	1264.81065100522	1295.89108447619	1380.11724317016
+QUASIMODO_I-int	2401.85961057127	2353.13609489344	2222.84838955145	2168.54149325156
+QUASIMODO_LTR	217.924169021681	155.306982262967	198.633708230413	195.565195350847
+QUASIMODO2-I_DM	533.344258584139	532.691183481502	405.17100995648	370.641021853182
+QUASIMODO2-LTR_DM	39.9639399190529	30.8849112454764	46.6759389460354	33.3160469081512
+R1_DM	2068.46915876333	1770.44076939545	1095.0205101621	900.699328161867
+R1-2_DM	24.6757212923011	20.0016568065942	39.8162162894296	29.4847015137138
+R2_DM	7247.42027216596	4449.78035544349	2285.62976429995	1400.44003178414
+ROO_I-int	4562.72861699979	6747.9118941188	4741.11222655369	4669.91029511555
+ROO_LTR	297.583834497914	427.388343235021	244.414900742978	308.340014134939
+ROOA_I-int	550.241763382128	758.592248591272	743.385161808263	764.436696307529
+ROOA_LTR	58.3366237073423	81.1831952738236	59.6497622313551	80.4582532831851
+ROVER-I_DM	931.642585965304	902.721834403496	971.24725353204	931.016930848285
+ROVER-LTR_DM	55.6544800886139	49.4158579927622	84.1061647462108	69.1307973344137
+S_DM	667.049117977749	600.343846209689	538.637352949137	579.032895263668
+S2_DM	96.0207415504761	60.2991124316444	114.080170267467	122.103311918374
+SSU-rRNA_Cel	516.983182509896	534.456035552672	516.417816517957	363.64465200247
+SSU-rRNA_Dme	1335.43930776486	1124.21076933534	1060.72189687907	691.80771404776
+SSU-rRNA_Hsa	75592.5969999742	88775.8830260092	47428.2715721784	28668.4583644641
+Stalker2_I-int	1470.61934614877	1415.99964510213	1827.07221714641	2077.92184566139
+Stalker2_LTR	105.944672939771	104.714556222758	108.26431844991	111.941917611388
+Stalker3_LTR	72.8201992484756	69.1233727874948	88.430772507984	73.1287229633919
+STALKER4_I-int	977.239027483686	921.252781150781	925.615185425053	956.33712649848
+STALKER4_LTR	273.578649110295	236.196035524929	192.668732007277	201.562083794315
+TABOR_I-int	738.125923874051	1085.67816578146	588.594028817897	513.233702620069
+TABOR_LTR	59.4094811548337	25.8844970438278	57.2637717421009	45.4764040296264
+TAHRE	510.411930644011	416.799230808	680.007289437449	651.995037992519
+TART_B1	1794.62229529116	1496.88869836409	3765.09299204314	3583.64058567528
+TART-A	682.873765328246	536.809171647566	551.3129274233	567.705439314896
+TC1_DM	351.092599691545	436.800887614595	274.388906264234	326.497259699882
+TC1-2_DM	595.167668995828	672.702781127662	567.716612036923	657.658765966905
+TIRANT_I-int	3106.59284639215	3743.83952697546	1627.99113569926	1425.76022743433
+TIRANT_LTR	432.495658519952	469.450650931241	204.44956004797	213.056119977627
+TLD2	4.42553697090183	0.29414201186168	9.69308636259521	2.83186398719285
+TOM_I-int	929.228656708448	997.141420211095	382.205851497408	384.966922023687
+Transib-N1_DM	49.0832282227294	38.2384615420184	45.9303169181435	61.8012670146205
+TRANSIB1	164.817725370859	85.0070414280255	310.477012414204	352.48377628824
+TRANSIB2	450.197806403559	436.506745602733	476.750724634106	512.400801447365
+TRANSIB3	241.661140047427	217.959230789505	176.563296204811	188.568825500136
+TRANSIB4	48.8150138608566	45.003727814837	94.6939975422763	95.1173139227717
+Transib5	130.486287051136	96.478579890631	167.46670746453	160.749926331829
+TRANSPAC_I-int	3818.5678699836	4929.82011880175	1442.62949956532	2495.70507388961
+TRANSPAC_LTR	195.394162624363	287.965029612585	80.2289302011727	92.4520301701196
+XDMR	237.503817438398	265.610236711097	186.256382567406	239.875537738689
+XDMR_DM	542.999975611561	466.803372824486	494.645653303513	720.959255092392
+ZAM_I-int	924.803119737546	850.658698303978	764.859076211551	737.284118077386
+ZAM_LTR	50.55840721303	34.7087573996782	38.6232210448025	37.4805527716701