Mercurial > repos > artbio > repenrich2
diff test-data/chrY_paired_fraction_counts.tab @ 8:567549a49eb2 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 commit b3b166a8e991f49227e4888b8065b57cec0ba949
| author | artbio |
|---|---|
| date | Thu, 25 Apr 2024 09:06:48 +0000 |
| parents | 388a47ca4199 |
| children | 2b61c6407efb |
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--- a/test-data/chrY_paired_fraction_counts.tab Tue Apr 23 21:44:44 2024 +0000 +++ b/test-data/chrY_paired_fraction_counts.tab Thu Apr 25 09:06:48 2024 +0000 @@ -1,145 +1,145 @@ -A-rich Low_complexity Low_complexity 4.24 -ACCORD2_I-int LTR Gypsy 4.24 -ACCORD2_LTR LTR Gypsy 4.24 -ACCORD_I-int LTR Gypsy 4.24 -BARI1 DNA TcMar-Tc1 4.24 -BATUMI_LTR LTR Pao 4.24 -BS LINE Jockey 4.24 -BS2 LINE Jockey 62.24 -BURDOCK_I-int LTR Gypsy 4.24 -Baggins1 LINE LOA 4.24 -Bica_I-int LTR Gypsy 42.24 -Bica_LTR LTR Gypsy 4.24 -CIRCE LTR Gypsy 4.24 -Chouto_I-int LTR Gypsy 4.24 -Copia1-I_DM LTR Copia 4.24 -Copia_I-int LTR Copia 25185.24 -Copia_LTR LTR Copia 651.24 -DIVER2_I-int LTR Pao 4.24 -DIVER2_LTR LTR Pao 4.24 -DM1731_I-int LTR Copia 10.24 -DM1731_LTR LTR Copia 4.24 -DM176_I-int LTR Gypsy 4.24 -DM412 LTR Gypsy 4.24 -DM412B_LTR LTR Gypsy 4.24 -DMCR1A LINE CR1 8.24 -DMLTR5 LTR Gypsy 4.24 -DMRT1A LINE R1 4.24 -DMRT1B LINE R1 90.24 -DMRT1C LINE R1 4.24 -DNAREP1_DM RC Helitron 4.24 -DOC2_DM LINE Jockey 4.24 -DOC3_DM LINE Jockey 4.24 -FB4_DM DNA TcMar-Tc1 42.24 -FROGGER_I-int LTR Copia 4.24 -FW2_DM LINE Jockey 4.24 -G3_DM LINE Jockey 4.24 -G5A_DM LINE Jockey 4.24 -G5_DM LINE Jockey 4.24 -G6_DM LINE Jockey 4.24 -GA-rich Low_complexity Low_complexity 4.24 -GTWIN_I-int LTR Gypsy 4.24 -G_DM LINE Jockey 4.24 -Gypsy11_I-int LTR Gypsy 4.24 -Gypsy11_LTR LTR Gypsy 4.24 -Gypsy12_LTR LTR Gypsy 4.24 -Gypsy2-I_DM LTR Gypsy 6.24 -Gypsy2-LTR_DM LTR Gypsy 4.24 -Gypsy3_LTR LTR Gypsy 4.24 -Gypsy4_I-int LTR Gypsy 4.24 -Gypsy5_I-int LTR Gypsy 4.24 -Gypsy6A_LTR LTR Gypsy 4.24 -Gypsy6_I-int LTR Gypsy 30.24 -Gypsy8_I-int LTR Gypsy 4.24 -Gypsy8_LTR LTR Gypsy 4.24 -Gypsy9_I-int LTR Gypsy 4.24 -Gypsy_I-int LTR Gypsy 36.24 -Gypsy_LTR LTR Gypsy 5.24 -HELENA_RT LINE Jockey 4.24 -HETA LINE Jockey 28.24 -HMSBEAGLE_I-int LTR Gypsy 6.24 -IDEFIX_I-int LTR Gypsy 8.24 -IDEFIX_LTR LTR Gypsy 4.24 -Invader1_I-int LTR Gypsy 4.24 -Invader1_LTR LTR Gypsy 4.24 -Invader2_I-int LTR Gypsy 4.24 -Invader4_I-int LTR Gypsy 4.24 -Invader4_LTR LTR Gypsy 4.24 -Invader5_I-int LTR Gypsy 4.24 -Invader5_LTR LTR Gypsy 4.24 -Invader6_I-int LTR Gypsy 4.24 -Invader6_LTR LTR Gypsy 4.24 -MAX_I-int LTR Pao 53.24 -MAX_LTR LTR Pao 6.24 -MDG1_I-int LTR Gypsy 4.24 -MDG1_LTR LTR Gypsy 4.24 -MDG3_I-int LTR Gypsy 156.24 -MDG3_LTR LTR Gypsy 4.24 -MICROPIA_I-int LTR Gypsy 4.24 -MICROPIA_LTR LTR Gypsy 4.24 -Mariner2_DM DNA TcMar-Tc1 4.24 -NINJA_I-int LTR Pao 4.24 -NOMAD_I-int LTR Gypsy 4.24 -PROTOP_A DNA P 36.24 -PROTOP_B DNA P 4.24 -QUASIMODO2-I_DM LTR Gypsy 46.24 -QUASIMODO2-LTR_DM LTR Gypsy 4.24 -QUASIMODO_I-int LTR Gypsy 14.24 -QUASIMODO_LTR LTR Gypsy 6.24 -R1_DM LINE R1 4.24 -ROOA_I-int LTR Pao 4.24 -ROOA_LTR LTR Pao 4.24 -ROVER-I_DM LTR Gypsy 385.24 -ROVER-LTR_DM LTR Gypsy 6.24 -S2_DM DNA TcMar-Tc1 4.24 -STALKER4_I-int LTR Gypsy 81.24 -STALKER4_LTR LTR Gypsy 8.24 -S_DM DNA TcMar-Tc1 52.24 -Stalker2_I-int LTR Gypsy 84.24 -Stalker2_LTR LTR Gypsy 6.24 -TART-A LINE Jockey 8.24 -TART_B1 LINE Jockey 23.24 -TC1-2_DM DNA TcMar-Tc1 4.24 -TC1_DM DNA TcMar-Tc1 4.24 -TLD2 LTR Gypsy 4.24 -TRANSIB1 DNA CMC-Transib 4.24 -TRANSIB2 DNA CMC-Transib 34.24 -ZAM_I-int LTR Gypsy 4.24 -_AACACA_n Simple_repeat Simple_repeat 4.24 -_AAT_n Simple_repeat Simple_repeat 4.24 -_ACAATAG_n Simple_repeat Simple_repeat 4.24 -_ACC_n Simple_repeat Simple_repeat 4.24 -_AGAGAAG_n Simple_repeat Simple_repeat 4.24 -_AGAGA_n Simple_repeat Simple_repeat 4.24 -_ATAAT_n Simple_repeat Simple_repeat 4.24 -_ATATATT_n Simple_repeat Simple_repeat 4.24 -_ATATTAT_n Simple_repeat Simple_repeat 4.24 -_ATTTTT_n Simple_repeat Simple_repeat 4.24 -_ATT_n Simple_repeat Simple_repeat 4.24 -_AT_n Simple_repeat Simple_repeat 4.24 -_A_n Simple_repeat Simple_repeat 4.24 -_CATA_n Simple_repeat Simple_repeat 4.24 -_CTTTT_n Simple_repeat Simple_repeat 4.24 -_GAGAA_n Simple_repeat Simple_repeat 4.24 -_GCCTTT_n Simple_repeat Simple_repeat 4.24 -_TAATAT_n Simple_repeat Simple_repeat 4.24 -_TAATA_n Simple_repeat Simple_repeat 4.24 -_TATAAAA_n Simple_repeat Simple_repeat 4.24 -_TATAA_n Simple_repeat Simple_repeat 4.24 -_TATCATG_n Simple_repeat Simple_repeat 4.24 -_TA_n Simple_repeat Simple_repeat 4.24 -_TGTTG_n Simple_repeat Simple_repeat 4.24 -_TTATATA_n Simple_repeat Simple_repeat 4.24 -_TTATAT_n Simple_repeat Simple_repeat 4.24 -_TTATA_n Simple_repeat Simple_repeat 4.24 -_TTA_n Simple_repeat Simple_repeat 4.24 -_TTCTT_n Simple_repeat Simple_repeat 4.24 -_TTC_n Simple_repeat Simple_repeat 4.24 -_TTTAT_n Simple_repeat Simple_repeat 4.24 -_TTTA_n Simple_repeat Simple_repeat 4.24 -_TTTC_n Simple_repeat Simple_repeat 4.24 -_TTTGA_n Simple_repeat Simple_repeat 4.24 -_TTTTAG_n Simple_repeat Simple_repeat 4.24 -_TTTTCTT_n Simple_repeat Simple_repeat 4.24 -_TTTTC_n Simple_repeat Simple_repeat 4.24 -_T_n Simple_repeat Simple_repeat 4.24 +A-rich Low_complexity Low_complexity 0.0 +ACCORD2_I-int LTR Gypsy 0.0 +ACCORD2_LTR LTR Gypsy 0.0 +ACCORD_I-int LTR Gypsy 0.0 +BARI1 DNA TcMar-Tc1 0.0 +BATUMI_LTR LTR Pao 0.0 +BS LINE Jockey 0.0 +BS2 LINE Jockey 58.0 +BURDOCK_I-int LTR Gypsy 0.0 +Baggins1 LINE LOA 0.0 +Bica_I-int LTR Gypsy 49.0 +Bica_LTR LTR Gypsy 1.0 +CIRCE LTR Gypsy 0.0 +Chouto_I-int LTR Gypsy 1.5 +Copia1-I_DM LTR Copia 0.0 +Copia_I-int LTR Copia 25220.0 +Copia_LTR LTR Copia 652.0 +DIVER2_I-int LTR Pao 1.0 +DIVER2_LTR LTR Pao 2.0 +DM1731_I-int LTR Copia 8.0 +DM1731_LTR LTR Copia 0.0 +DM176_I-int LTR Gypsy 0.0 +DM412 LTR Gypsy 12.5 +DM412B_LTR LTR Gypsy 0.0 +DMCR1A LINE CR1 4.0 +DMLTR5 LTR Gypsy 0.0 +DMRT1A LINE R1 0.0 +DMRT1B LINE R1 116.0 +DMRT1C LINE R1 0.0 +DNAREP1_DM RC Helitron 0.0 +DOC2_DM LINE Jockey 0.0 +DOC3_DM LINE Jockey 0.0 +FB4_DM DNA TcMar-Tc1 41.0 +FROGGER_I-int LTR Copia 0.0 +FW2_DM LINE Jockey 0.0 +G3_DM LINE Jockey 0.0 +G5A_DM LINE Jockey 0.0 +G5_DM LINE Jockey 0.0 +G6_DM LINE Jockey 0.0 +GA-rich Low_complexity Low_complexity 0.67 +GTWIN_I-int LTR Gypsy 12.5 +G_DM LINE Jockey 0.0 +Gypsy11_I-int LTR Gypsy 0.0 +Gypsy11_LTR LTR Gypsy 0.0 +Gypsy12_LTR LTR Gypsy 0.0 +Gypsy2-I_DM LTR Gypsy 4.0 +Gypsy2-LTR_DM LTR Gypsy 0.0 +Gypsy3_LTR LTR Gypsy 0.0 +Gypsy4_I-int LTR Gypsy 0.0 +Gypsy5_I-int LTR Gypsy 0.0 +Gypsy6A_LTR LTR Gypsy 1.0 +Gypsy6_I-int LTR Gypsy 31.0 +Gypsy8_I-int LTR Gypsy 0.0 +Gypsy8_LTR LTR Gypsy 0.0 +Gypsy9_I-int LTR Gypsy 0.0 +Gypsy_I-int LTR Gypsy 32.0 +Gypsy_LTR LTR Gypsy 1.0 +HELENA_RT LINE Jockey 0.0 +HETA LINE Jockey 24.0 +HMSBEAGLE_I-int LTR Gypsy 2.0 +IDEFIX_I-int LTR Gypsy 8.0 +IDEFIX_LTR LTR Gypsy 2.0 +Invader1_I-int LTR Gypsy 0.0 +Invader1_LTR LTR Gypsy 0.0 +Invader2_I-int LTR Gypsy 0.0 +Invader4_I-int LTR Gypsy 0.0 +Invader4_LTR LTR Gypsy 0.0 +Invader5_I-int LTR Gypsy 0.0 +Invader5_LTR LTR Gypsy 0.0 +Invader6_I-int LTR Gypsy 0.0 +Invader6_LTR LTR Gypsy 0.0 +MAX_I-int LTR Pao 56.0 +MAX_LTR LTR Pao 2.0 +MDG1_I-int LTR Gypsy 0.0 +MDG1_LTR LTR Gypsy 0.0 +MDG3_I-int LTR Gypsy 156.5 +MDG3_LTR LTR Gypsy 2.5 +MICROPIA_I-int LTR Gypsy 51.0 +MICROPIA_LTR LTR Gypsy 2.0 +Mariner2_DM DNA TcMar-Tc1 0.0 +NINJA_I-int LTR Pao 0.0 +NOMAD_I-int LTR Gypsy 0.0 +PROTOP_A DNA P 50.0 +PROTOP_B DNA P 10.0 +QUASIMODO2-I_DM LTR Gypsy 43.0 +QUASIMODO2-LTR_DM LTR Gypsy 0.0 +QUASIMODO_I-int LTR Gypsy 108.0 +QUASIMODO_LTR LTR Gypsy 23.0 +R1_DM LINE R1 0.0 +ROOA_I-int LTR Pao 0.0 +ROOA_LTR LTR Pao 0.0 +ROVER-I_DM LTR Gypsy 414.0 +ROVER-LTR_DM LTR Gypsy 6.0 +S2_DM DNA TcMar-Tc1 0.0 +STALKER4_I-int LTR Gypsy 143.5 +STALKER4_LTR LTR Gypsy 25.0 +S_DM DNA TcMar-Tc1 53.0 +Stalker2_I-int LTR Gypsy 103.0 +Stalker2_LTR LTR Gypsy 3.0 +TART-A LINE Jockey 4.0 +TART_B1 LINE Jockey 21.0 +TC1-2_DM DNA TcMar-Tc1 0.0 +TC1_DM DNA TcMar-Tc1 0.0 +TLD2 LTR Gypsy 0.0 +TRANSIB1 DNA CMC-Transib 0.0 +TRANSIB2 DNA CMC-Transib 30.0 +ZAM_I-int LTR Gypsy 0.0 +_AACACA_n Simple_repeat Simple_repeat 0.0 +_AAT_n Simple_repeat Simple_repeat 0.0 +_ACAATAG_n Simple_repeat Simple_repeat 0.0 +_ACC_n Simple_repeat Simple_repeat 0.0 +_AGAGAAG_n Simple_repeat Simple_repeat 2.17 +_AGAGA_n Simple_repeat Simple_repeat 43.0 +_ATAAT_n Simple_repeat Simple_repeat 0.0 +_ATATATT_n Simple_repeat Simple_repeat 0.0 +_ATATTAT_n Simple_repeat Simple_repeat 0.0 +_ATTTTT_n Simple_repeat Simple_repeat 0.0 +_ATT_n Simple_repeat Simple_repeat 0.0 +_AT_n Simple_repeat Simple_repeat 0.0 +_A_n Simple_repeat Simple_repeat 0.0 +_CATA_n Simple_repeat Simple_repeat 0.0 +_CTTTT_n Simple_repeat Simple_repeat 0.0 +_GAGAA_n Simple_repeat Simple_repeat 45.17 +_GCCTTT_n Simple_repeat Simple_repeat 0.0 +_TAATAT_n Simple_repeat Simple_repeat 0.0 +_TAATA_n Simple_repeat Simple_repeat 0.0 +_TATAAAA_n Simple_repeat Simple_repeat 0.0 +_TATAA_n Simple_repeat Simple_repeat 0.0 +_TATCATG_n Simple_repeat Simple_repeat 0.0 +_TA_n Simple_repeat Simple_repeat 0.0 +_TGTTG_n Simple_repeat Simple_repeat 0.0 +_TTATATA_n Simple_repeat Simple_repeat 0.0 +_TTATAT_n Simple_repeat Simple_repeat 0.0 +_TTATA_n Simple_repeat Simple_repeat 0.0 +_TTA_n Simple_repeat Simple_repeat 0.0 +_TTCTT_n Simple_repeat Simple_repeat 0.0 +_TTC_n Simple_repeat Simple_repeat 0.0 +_TTTAT_n Simple_repeat Simple_repeat 0.0 +_TTTA_n Simple_repeat Simple_repeat 0.0 +_TTTC_n Simple_repeat Simple_repeat 0.0 +_TTTGA_n Simple_repeat Simple_repeat 0.0 +_TTTTAG_n Simple_repeat Simple_repeat 0.0 +_TTTTCTT_n Simple_repeat Simple_repeat 0.0 +_TTTTC_n Simple_repeat Simple_repeat 0.0 +_T_n Simple_repeat Simple_repeat 0.0