Mercurial > repos > artbio > repenrich2
diff test-data/chrY_single_fraction_counts.tab @ 8:567549a49eb2 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 commit b3b166a8e991f49227e4888b8065b57cec0ba949
| author | artbio |
|---|---|
| date | Thu, 25 Apr 2024 09:06:48 +0000 |
| parents | 388a47ca4199 |
| children |
line wrap: on
line diff
--- a/test-data/chrY_single_fraction_counts.tab Tue Apr 23 21:44:44 2024 +0000 +++ b/test-data/chrY_single_fraction_counts.tab Thu Apr 25 09:06:48 2024 +0000 @@ -1,145 +1,145 @@ -A-rich Low_complexity Low_complexity 4.72 -ACCORD2_I-int LTR Gypsy 4.72 -ACCORD2_LTR LTR Gypsy 4.72 -ACCORD_I-int LTR Gypsy 4.72 -BARI1 DNA TcMar-Tc1 4.72 -BATUMI_LTR LTR Pao 4.72 -BS LINE Jockey 4.72 -BS2 LINE Jockey 33.72 -BURDOCK_I-int LTR Gypsy 4.72 -Baggins1 LINE LOA 4.72 -Bica_I-int LTR Gypsy 23.72 -Bica_LTR LTR Gypsy 4.72 -CIRCE LTR Gypsy 4.72 -Chouto_I-int LTR Gypsy 4.72 -Copia1-I_DM LTR Copia 4.72 -Copia_I-int LTR Copia 12656.72 -Copia_LTR LTR Copia 138.72 -DIVER2_I-int LTR Pao 5.72 -DIVER2_LTR LTR Pao 4.72 -DM1731_I-int LTR Copia 7.72 -DM1731_LTR LTR Copia 4.72 -DM176_I-int LTR Gypsy 4.72 -DM412 LTR Gypsy 4.72 -DM412B_LTR LTR Gypsy 4.72 -DMCR1A LINE CR1 6.72 -DMLTR5 LTR Gypsy 4.72 -DMRT1A LINE R1 4.72 -DMRT1B LINE R1 39.72 -DMRT1C LINE R1 4.72 -DNAREP1_DM RC Helitron 4.72 -DOC2_DM LINE Jockey 4.72 -DOC3_DM LINE Jockey 4.72 -FB4_DM DNA TcMar-Tc1 19.72 -FROGGER_I-int LTR Copia 4.72 -FW2_DM LINE Jockey 4.72 -G3_DM LINE Jockey 4.72 -G5A_DM LINE Jockey 4.72 -G5_DM LINE Jockey 4.72 -G6_DM LINE Jockey 4.72 -GA-rich Low_complexity Low_complexity 4.72 -GTWIN_I-int LTR Gypsy 4.72 -G_DM LINE Jockey 4.72 -Gypsy11_I-int LTR Gypsy 4.72 -Gypsy11_LTR LTR Gypsy 4.72 -Gypsy12_LTR LTR Gypsy 4.72 -Gypsy2-I_DM LTR Gypsy 5.72 -Gypsy2-LTR_DM LTR Gypsy 4.72 -Gypsy3_LTR LTR Gypsy 4.72 -Gypsy4_I-int LTR Gypsy 4.72 -Gypsy5_I-int LTR Gypsy 4.72 -Gypsy6A_LTR LTR Gypsy 4.72 -Gypsy6_I-int LTR Gypsy 16.72 -Gypsy8_I-int LTR Gypsy 4.72 -Gypsy8_LTR LTR Gypsy 4.72 -Gypsy9_I-int LTR Gypsy 4.72 -Gypsy_I-int LTR Gypsy 19.72 -Gypsy_LTR LTR Gypsy 4.72 -HELENA_RT LINE Jockey 4.72 -HETA LINE Jockey 16.72 -HMSBEAGLE_I-int LTR Gypsy 5.72 -IDEFIX_I-int LTR Gypsy 4.72 -IDEFIX_LTR LTR Gypsy 4.72 -Invader1_I-int LTR Gypsy 4.72 -Invader1_LTR LTR Gypsy 4.72 -Invader2_I-int LTR Gypsy 4.72 -Invader4_I-int LTR Gypsy 4.72 -Invader4_LTR LTR Gypsy 4.72 -Invader5_I-int LTR Gypsy 4.72 -Invader5_LTR LTR Gypsy 4.72 -Invader6_I-int LTR Gypsy 4.72 -Invader6_LTR LTR Gypsy 4.72 -MAX_I-int LTR Pao 31.72 -MAX_LTR LTR Pao 5.72 -MDG1_I-int LTR Gypsy 4.72 -MDG1_LTR LTR Gypsy 4.72 -MDG3_I-int LTR Gypsy 74.72 -MDG3_LTR LTR Gypsy 4.72 -MICROPIA_I-int LTR Gypsy 4.72 -MICROPIA_LTR LTR Gypsy 4.72 -Mariner2_DM DNA TcMar-Tc1 4.72 -NINJA_I-int LTR Pao 4.72 -NOMAD_I-int LTR Gypsy 4.72 -PROTOP_A DNA P 22.72 -PROTOP_B DNA P 4.72 -QUASIMODO2-I_DM LTR Gypsy 23.72 -QUASIMODO2-LTR_DM LTR Gypsy 4.72 -QUASIMODO_I-int LTR Gypsy 7.72 -QUASIMODO_LTR LTR Gypsy 5.72 -R1_DM LINE R1 4.72 -ROOA_I-int LTR Pao 4.72 -ROOA_LTR LTR Pao 4.72 -ROVER-I_DM LTR Gypsy 192.72 -ROVER-LTR_DM LTR Gypsy 5.72 -S2_DM DNA TcMar-Tc1 4.72 -STALKER4_I-int LTR Gypsy 32.72 -STALKER4_LTR LTR Gypsy 4.72 -S_DM DNA TcMar-Tc1 29.72 -Stalker2_I-int LTR Gypsy 36.72 -Stalker2_LTR LTR Gypsy 6.72 -TART-A LINE Jockey 6.72 -TART_B1 LINE Jockey 14.72 -TC1-2_DM DNA TcMar-Tc1 4.72 -TC1_DM DNA TcMar-Tc1 4.72 -TLD2 LTR Gypsy 4.72 -TRANSIB1 DNA CMC-Transib 4.72 -TRANSIB2 DNA CMC-Transib 16.72 -ZAM_I-int LTR Gypsy 4.72 -_AACACA_n Simple_repeat Simple_repeat 4.72 -_AAT_n Simple_repeat Simple_repeat 4.72 -_ACAATAG_n Simple_repeat Simple_repeat 4.72 -_ACC_n Simple_repeat Simple_repeat 4.72 -_AGAGAAG_n Simple_repeat Simple_repeat 4.72 -_AGAGA_n Simple_repeat Simple_repeat 4.72 -_ATAAT_n Simple_repeat Simple_repeat 4.72 -_ATATATT_n Simple_repeat Simple_repeat 4.72 -_ATATTAT_n Simple_repeat Simple_repeat 4.72 -_ATTTTT_n Simple_repeat Simple_repeat 4.72 -_ATT_n Simple_repeat Simple_repeat 4.72 -_AT_n Simple_repeat Simple_repeat 4.72 -_A_n Simple_repeat Simple_repeat 4.72 -_CATA_n Simple_repeat Simple_repeat 4.72 -_CTTTT_n Simple_repeat Simple_repeat 4.72 -_GAGAA_n Simple_repeat Simple_repeat 4.72 -_GCCTTT_n Simple_repeat Simple_repeat 4.72 -_TAATAT_n Simple_repeat Simple_repeat 4.72 -_TAATA_n Simple_repeat Simple_repeat 4.72 -_TATAAAA_n Simple_repeat Simple_repeat 4.72 -_TATAA_n Simple_repeat Simple_repeat 4.72 -_TATCATG_n Simple_repeat Simple_repeat 4.72 -_TA_n Simple_repeat Simple_repeat 4.72 -_TGTTG_n Simple_repeat Simple_repeat 4.72 -_TTATATA_n Simple_repeat Simple_repeat 4.72 -_TTATAT_n Simple_repeat Simple_repeat 4.72 -_TTATA_n Simple_repeat Simple_repeat 4.72 -_TTA_n Simple_repeat Simple_repeat 4.72 -_TTCTT_n Simple_repeat Simple_repeat 4.72 -_TTC_n Simple_repeat Simple_repeat 4.72 -_TTTAT_n Simple_repeat Simple_repeat 4.72 -_TTTA_n Simple_repeat Simple_repeat 4.72 -_TTTC_n Simple_repeat Simple_repeat 4.72 -_TTTGA_n Simple_repeat Simple_repeat 4.72 -_TTTTAG_n Simple_repeat Simple_repeat 4.72 -_TTTTCTT_n Simple_repeat Simple_repeat 4.72 -_TTTTC_n Simple_repeat Simple_repeat 4.72 -_T_n Simple_repeat Simple_repeat 4.72 +A-rich Low_complexity Low_complexity 0.0 +ACCORD2_I-int LTR Gypsy 0.0 +ACCORD2_LTR LTR Gypsy 0.0 +ACCORD_I-int LTR Gypsy 0.0 +BARI1 DNA TcMar-Tc1 0.0 +BATUMI_LTR LTR Pao 0.0 +BS LINE Jockey 0.0 +BS2 LINE Jockey 29.0 +BURDOCK_I-int LTR Gypsy 0.0 +Baggins1 LINE LOA 0.0 +Bica_I-int LTR Gypsy 31.0 +Bica_LTR LTR Gypsy 0.0 +CIRCE LTR Gypsy 0.0 +Chouto_I-int LTR Gypsy 1.5 +Copia1-I_DM LTR Copia 0.0 +Copia_I-int LTR Copia 12703.0 +Copia_LTR LTR Copia 157.0 +DIVER2_I-int LTR Pao 1.0 +DIVER2_LTR LTR Pao 2.0 +DM1731_I-int LTR Copia 5.0 +DM1731_LTR LTR Copia 0.0 +DM176_I-int LTR Gypsy 0.0 +DM412 LTR Gypsy 12.5 +DM412B_LTR LTR Gypsy 0.0 +DMCR1A LINE CR1 2.0 +DMLTR5 LTR Gypsy 0.0 +DMRT1A LINE R1 0.0 +DMRT1B LINE R1 73.0 +DMRT1C LINE R1 0.0 +DNAREP1_DM RC Helitron 0.0 +DOC2_DM LINE Jockey 0.0 +DOC3_DM LINE Jockey 0.0 +FB4_DM DNA TcMar-Tc1 22.0 +FROGGER_I-int LTR Copia 0.0 +FW2_DM LINE Jockey 0.0 +G3_DM LINE Jockey 0.0 +G5A_DM LINE Jockey 0.0 +G5_DM LINE Jockey 0.0 +G6_DM LINE Jockey 0.0 +GA-rich Low_complexity Low_complexity 0.0 +GTWIN_I-int LTR Gypsy 12.5 +G_DM LINE Jockey 0.0 +Gypsy11_I-int LTR Gypsy 0.0 +Gypsy11_LTR LTR Gypsy 0.0 +Gypsy12_LTR LTR Gypsy 0.0 +Gypsy2-I_DM LTR Gypsy 3.0 +Gypsy2-LTR_DM LTR Gypsy 0.0 +Gypsy3_LTR LTR Gypsy 0.0 +Gypsy4_I-int LTR Gypsy 0.0 +Gypsy5_I-int LTR Gypsy 0.0 +Gypsy6A_LTR LTR Gypsy 0.0 +Gypsy6_I-int LTR Gypsy 18.0 +Gypsy8_I-int LTR Gypsy 0.0 +Gypsy8_LTR LTR Gypsy 0.0 +Gypsy9_I-int LTR Gypsy 0.0 +Gypsy_I-int LTR Gypsy 16.0 +Gypsy_LTR LTR Gypsy 0.0 +HELENA_RT LINE Jockey 0.0 +HETA LINE Jockey 12.0 +HMSBEAGLE_I-int LTR Gypsy 1.0 +IDEFIX_I-int LTR Gypsy 6.0 +IDEFIX_LTR LTR Gypsy 2.0 +Invader1_I-int LTR Gypsy 0.0 +Invader1_LTR LTR Gypsy 0.0 +Invader2_I-int LTR Gypsy 0.0 +Invader4_I-int LTR Gypsy 0.0 +Invader4_LTR LTR Gypsy 0.0 +Invader5_I-int LTR Gypsy 0.0 +Invader5_LTR LTR Gypsy 0.0 +Invader6_I-int LTR Gypsy 0.0 +Invader6_LTR LTR Gypsy 0.0 +MAX_I-int LTR Pao 31.0 +MAX_LTR LTR Pao 1.0 +MDG1_I-int LTR Gypsy 0.0 +MDG1_LTR LTR Gypsy 0.0 +MDG3_I-int LTR Gypsy 80.0 +MDG3_LTR LTR Gypsy 3.0 +MICROPIA_I-int LTR Gypsy 51.0 +MICROPIA_LTR LTR Gypsy 2.0 +Mariner2_DM DNA TcMar-Tc1 0.0 +NINJA_I-int LTR Pao 0.0 +NOMAD_I-int LTR Gypsy 0.0 +PROTOP_A DNA P 37.5 +PROTOP_B DNA P 6.5 +QUASIMODO2-I_DM LTR Gypsy 22.0 +QUASIMODO2-LTR_DM LTR Gypsy 0.0 +QUASIMODO_I-int LTR Gypsy 100.0 +QUASIMODO_LTR LTR Gypsy 24.0 +R1_DM LINE R1 0.0 +ROOA_I-int LTR Pao 0.0 +ROOA_LTR LTR Pao 0.0 +ROVER-I_DM LTR Gypsy 224.0 +ROVER-LTR_DM LTR Gypsy 5.0 +S2_DM DNA TcMar-Tc1 0.0 +STALKER4_I-int LTR Gypsy 107.0 +STALKER4_LTR LTR Gypsy 23.0 +S_DM DNA TcMar-Tc1 28.0 +Stalker2_I-int LTR Gypsy 58.5 +Stalker2_LTR LTR Gypsy 2.0 +TART-A LINE Jockey 2.0 +TART_B1 LINE Jockey 11.0 +TC1-2_DM DNA TcMar-Tc1 0.0 +TC1_DM DNA TcMar-Tc1 0.0 +TLD2 LTR Gypsy 0.0 +TRANSIB1 DNA CMC-Transib 0.0 +TRANSIB2 DNA CMC-Transib 15.0 +ZAM_I-int LTR Gypsy 0.0 +_AACACA_n Simple_repeat Simple_repeat 0.0 +_AAT_n Simple_repeat Simple_repeat 0.0 +_ACAATAG_n Simple_repeat Simple_repeat 0.0 +_ACC_n Simple_repeat Simple_repeat 0.0 +_AGAGAAG_n Simple_repeat Simple_repeat 2.5 +_AGAGA_n Simple_repeat Simple_repeat 43.0 +_ATAAT_n Simple_repeat Simple_repeat 0.0 +_ATATATT_n Simple_repeat Simple_repeat 0.0 +_ATATTAT_n Simple_repeat Simple_repeat 0.0 +_ATTTTT_n Simple_repeat Simple_repeat 0.0 +_ATT_n Simple_repeat Simple_repeat 0.0 +_AT_n Simple_repeat Simple_repeat 0.0 +_A_n Simple_repeat Simple_repeat 0.0 +_CATA_n Simple_repeat Simple_repeat 0.0 +_CTTTT_n Simple_repeat Simple_repeat 0.0 +_GAGAA_n Simple_repeat Simple_repeat 45.5 +_GCCTTT_n Simple_repeat Simple_repeat 0.0 +_TAATAT_n Simple_repeat Simple_repeat 0.0 +_TAATA_n Simple_repeat Simple_repeat 0.0 +_TATAAAA_n Simple_repeat Simple_repeat 0.0 +_TATAA_n Simple_repeat Simple_repeat 0.0 +_TATCATG_n Simple_repeat Simple_repeat 0.0 +_TA_n Simple_repeat Simple_repeat 0.0 +_TGTTG_n Simple_repeat Simple_repeat 0.0 +_TTATATA_n Simple_repeat Simple_repeat 0.0 +_TTATAT_n Simple_repeat Simple_repeat 0.0 +_TTATA_n Simple_repeat Simple_repeat 0.0 +_TTA_n Simple_repeat Simple_repeat 0.0 +_TTCTT_n Simple_repeat Simple_repeat 0.0 +_TTC_n Simple_repeat Simple_repeat 0.0 +_TTTAT_n Simple_repeat Simple_repeat 0.0 +_TTTA_n Simple_repeat Simple_repeat 0.0 +_TTTC_n Simple_repeat Simple_repeat 0.0 +_TTTGA_n Simple_repeat Simple_repeat 0.0 +_TTTTAG_n Simple_repeat Simple_repeat 0.0 +_TTTTCTT_n Simple_repeat Simple_repeat 0.0 +_TTTTC_n Simple_repeat Simple_repeat 0.0 +_T_n Simple_repeat Simple_repeat 0.0