Mercurial > repos > artbio > repenrich2

diff repenrich2.xml @ 4:c5bb2f9af708 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 commit 6b3b1194af0de793a1b4892c5973da835f5c0902
author artbio
date Sat, 20 Apr 2024 23:23:40 +0000
parents 0efb0ee6a7e9
children 08e50af788f7
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line diff
--- a/repenrich2.xml	Sat Apr 20 15:45:33 2024 +0000
+++ b/repenrich2.xml	Sat Apr 20 23:23:40 2024 +0000
@@ -26,7 +26,7 @@
             #set index_path = 'genome'
         #else:
             #set index_path = $refGenomeSource.genome.fields.path
-            bowtie-inspect $index_path > genome.fa &&
+            ln -s '${index_path}.fa' 'genome.fa' &&
         #end if
 
         python $__tool_directory__/RepEnrich2_setup.py