Mercurial > repos > artbio > sashimi_plot

comparison sashimi_plot.xml @ 2:964b974a5348 draft default tip

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sashimi_plot commit c9cdba24b5e5f47d61814834ea5e376467fede5c"
author artbio
date Tue, 07 Jan 2020 06:30:31 -0500
parents 64aa67b5099f
children
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1:64aa67b5099f 2:964b974a5348
1 <tool id="sashimi_plot" name="Sashimi plot" version="0.1.0"> 1 <tool id="sashimi_plot" name="Sashimi plot" version="0.1.1">
2 <description>: visualization of splicing events across multiple samples</description> 2 <description>: visualization of splicing events across multiple samples</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3">python</requirement> 4 <requirement type="package" version="3">python</requirement>
5 <requirement type="package" version="1.3">samtools</requirement> 5 <requirement type="package" version="1.3">samtools</requirement>
6 <requirement type="package" version="2.2.1=r3.4.1_0">r-ggplot2</requirement> 6 <requirement type="package" version="2.2.1=r3.4.1_0">r-ggplot2</requirement>
77 </when> 77 </when>
78 <when value="1"/> 78 <when value="1"/>
79 </conditional> 79 </conditional>
80 <param name="alpha" label="Transparency level for density histogram" type="float" value="0.5" help="default=0.5"/> 80 <param name="alpha" label="Transparency level for density histogram" type="float" value="0.5" help="default=0.5"/>
81 <param name="base_size" label="Base font size" type="float" value="14" help="Base font size of the plot in pch [default=14]"/> 81 <param name="base_size" label="Base font size" type="float" value="14" help="Base font size of the plot in pch [default=14]"/>
82 <param name="ann_height" label="Height of annotation" type="float" value="1.5" help="Height of annotation plot (transcripts visualisation) in inches [default=1.5]"/> 82 <param name="ann_height" label="Height of annotation" type="float" value="1.5" help="Height of annotation plot (transcript visualisation) in inches [default=1.5]"/>
83 <param name="height" label="Height of sashimi plot" type="float" value="2" help="Height of the individual signal plot (sashimi vizualisation) in inches [default=2]"/> 83 <param name="height" label="Height of sashimi plot" type="float" value="2" help="Height of the individual signal plot (sashimi vizualisation) in inches [default=2]"/>
84 <param name="width" label="Width" type="float" value="10" help="Width of the plot in inches [default=10]"/> 84 <param name="width" label="Width" type="float" value="10" help="Width of the plot in inches [default=10]"/>
85 </when> 85 </when>
86 </conditional> 86 </conditional>
87 <param name="region" type="text" help="Must be the following format : chromosome:start-end"/> 87 <param name="region" type="text" help="Must be the following format : chromosome:start-end"/>