Mercurial > repos > artbio > sequence_format_converter
comparison sequence_format_converter.py @ 3:772bd67ef26a draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sequence_format_converter commit 07c73df696d6d80e03f03232603d713882131625"
| author | artbio |
|---|---|
| date | Mon, 11 May 2020 19:58:45 -0400 |
| parents | 9ce7ccd468aa |
| children |
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| 2:f1d59113125a | 3:772bd67ef26a |
|---|---|
| 36 input = open(input, 'r') | 36 input = open(input, 'r') |
| 37 block = [] | 37 block = [] |
| 38 reference = ['A', 'T', 'G', 'C', 'N'] | 38 reference = ['A', 'T', 'G', 'C', 'N'] |
| 39 format = '' | 39 format = '' |
| 40 try: | 40 try: |
| 41 for l in range(4): | 41 for n in range(4): |
| 42 block.append(input.readline()[:-1]) | 42 block.append(input.readline()[:-1]) |
| 43 except IndexError: | 43 except IndexError: |
| 44 logging.info("File hasn't at leat four lines !") | 44 logging.info("File hasn't at leat four lines !") |
| 45 sys.exit("File hasn't at leat four lines !") | 45 sys.exit("File hasn't at leat four lines !") |
| 46 input.close() | 46 input.close() |