Mercurial > repos > artbio > sequence_format_converter

comparison sequence_format_converter.xml @ 4:1c14d2869d4d draft default tip

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sequence_format_converter commit 9c5f0b8e89dfe4347c610f42923f0acad2ecc81b"
author artbio
date Wed, 17 Mar 2021 22:09:13 +0000
parents 772bd67ef26a
children
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3:772bd67ef26a 4:1c14d2869d4d
1 <tool id="sequence_format_converter" name="sequence_format_converter" version="2.1.2"> 1 <tool id="sequence_format_converter" name="sequence_format_converter" version="2.2.0">
2 <description></description> 2 <description></description>
3 <requirements>
4 <requirement type="package" version="3.7.6">python</requirement>
5 </requirements>
3 <command><![CDATA[ 6 <command><![CDATA[
4 #if $input.is_of_type('fastq.gz'): 7 #if $input.is_of_type('fastq.gz'):
5 gzip -dc $input > '${input}.tmp'; 8 gzip -dc $input > '${input}.tmp';
6 python '$__tool_directory__'/sequence_format_converter.py 9 python '$__tool_directory__'/sequence_format_converter.py
7 --input '${input}.tmp' 10 --input '${input}.tmp'
36 <tests> 39 <tests>
37 <test> 40 <test>
38 <!-- convertion fasta to tabular --> 41 <!-- convertion fasta to tabular -->
39 <param name="output_format" value="tabular" /> 42 <param name="output_format" value="tabular" />
40 <param ftype="fasta" name="input" value="input.fa" /> 43 <param ftype="fasta" name="input" value="input.fa" />
41 <output file="output.tab" name="output" /> 44 <output file="output.tab" name="output" sort="true" />
42 </test> 45 </test>
43 <test> 46 <test>
44 <!-- convertion tabular to fasta --> 47 <!-- convertion tabular to fasta -->
45 <param name="output_format" value="fasta" /> 48 <param name="output_format" value="fasta" />
46 <param ftype="tabular" name="input" value="output.tab" /> 49 <param ftype="tabular" name="input" value="output.tab" />