--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input.fa	Mon Sep 04 07:13:28 2017 -0400
@@ -0,0 +1,500 @@
+>1
+TAGTTACCTTCATATCTCTCTTTA
+>2
+TCTATTCATACAAAACACTAATACCC
+>3
+ACAACCTCAACTCATATTT
+>4
+TATAATTTTATTTTATATTTTCTCT
+>5
+TCTTCTATATAATCCTTTATTATAA
+>6
+TAAAATAAACCAAAACCCAAAAAT
+>7
+AATCTACAATTTCCATTACGACTCC
+>8
+TTTCCGACAAATACACCATCTTC
+>9
+CAGATTCACTGATTTTCTTACGCC
+>10
+CAAGAATACAAAAAATACTAATTA
+>11
+AACTCTCTAATTTAACTTTGTGC
+>12
+AAAAACACACAGACACAAGCAGCAAT
+>13
+TTACTAGATCCACCCTCATTA
+>14
+ATGTTATTTACTTTTTCCCCTTATA
+>15
+CGATATTTTCTCCTCTTACC
+>16
+TACAGAGAAATATACAACACTCACC
+>17
+ATGAAATTCGAACAATACGTC
+>18
+GAGAATAAATATTTCAATGGTCTATTG
+>19
+TGCTTTTACTACATATTTTTTATTTTTTTA
+>20
+CATACCTTAAATTATCTCTTTCTT
+>21
+TTTGTTTTTCATTTTTTTATCTTT
+>22
+TTATTATCTATTTTAATTTTTCTTAA
+>23
+TATTATCATCTCGTTCTTCCTTCTC
+>24
+TCAACTGGCAAGAATTTTTGAAAATT
+>25
+TACAAATTTTTTTTTCTTTCTTAT
+>26
+TTTTCTTTTTTTCATTTTCTCTTTTA
+>27
+AAGATGGAGTAGTTTTTT
+>28
+TCTCATCTTACAATTTTTTAAAACTT
+>29
+CATACCTACAAAAAAGCTTCTCTTAC
+>30
+TTTTATATTTCCTTATATCTTTACTA
+>31
+GGAGATTGTAGAACGAAAGGAAAAT
+>32
+TCTATTTCTTTATTTTTTTTATTAT
+>33
+CGGACGGTATATTTTTTAATATAA
+>34
+TTCTTGGACTACACATTTTTTATTGTTTTA
+>35
+TACTATATACTTCTTCAAATCACA
+>36
+ATTTTACTTCATCATTTTC
+>37
+TATTTCCAACCTTCAACCTCAAATAA
+>38
+CACGACTTTATTCTTTTTATCTCA
+>39
+TTCTTTTACTACATATTTTTTATTTTTTTA
+>40
+TTTATTACAACCCTATCTTACCTCAA
+>41
+CGATATTTTCTCCTCGTACC
+>42
+TAATTACCATTGCTAACTATCCA
+>43
+CATTAATTCATCCATTTAAACTAA
+>44
+GAAACAAACAACACATACCCTCTGGC
+>45
+TACTTTTTTCTTAATTTTTTATTAAAC
+>46
+TAACTTTAACTTTTTTACT
+>47
+TTCTTTTACTACATATTGTTTATTTTTTTA
+>48
+TCTAGTCTGAGCGTAGTACCAGATTG
+>49
+TTTTTTATCAATTTTCACCATTCAT
+>50
+AATGACACACTCTTCATCAAC
+>51
+TAACATAAATTTTAATCATAAATTG
+>52
+TCTATATTATTTTTATCAATTTTCACC
+>53
+TCCCAACCCTCGAGCATCATTTTC
+>54
+TAGTCATACATACCTAATTATACATA
+>55
+TACAAAAAATGCGAAAATTGACCCT
+>56
+GAGAACTTTTAATCATTTTAC
+>57
+TCTTATTTTAATCTTCCAATTTC
+>58
+CGGCACATGTTGAATTACACTCA
+>59
+CAGTTTCACAAAAGATCTTTTAA
+>60
+GCCAACGACCATACCACGA
+>61
+CAAATAACAAACTGAATAAACGAAA
+>62
+TAGTTTCACTACTTTATTCTTTTTA
+>63
+TGAGGAAAACAGAAAAATGAGAGACA
+>64
+TATATAAATCTTCAACATCAA
+>65
+TGATTTACTTACATTCTTTTTTT
+>66
+CTTCTTTTACTACATATTTTTTATTTTTTTA
+>67
+TACTGAAAACGGGCGCATATCAGTGG
+>68
+TATTCAATCACTCCATTATATATAACA
+>69
+TATATTGCCTCCCCATAATCCTT
+>70
+TCGCCGTAAAGCCAGTCGTTCTCC
+>71
+TTTAAACACTTCCTACATCAAATTTC
+>72
+TTTGTTTTTTACTATATTT
+>73
+TCTTTTTTTTAATACTTATTTTCATT
+>74
+TAAGTTTTTAATCATTTTTTTT
+>75
+TGAGAATGACTTCTTCACGATCTCTT
+>76
+AATTTATTTAATTTATATTCTAACTAA
+>77
+AAAAAATATCTTTTTTAACTCGTGGCC
+>78
+AAGACAACAATGACATATAAGACG
+>79
+TGAGCTAGAACTGCACCCACTCCA
+>80
+ACTAAACTTTTCTTACCATATTTCTA
+>81
+TATTTCACTTTATACTTCCTTAA
+>82
+TATCTATCTTTGATCTTCTTTTCA
+>83
+TTTTTATCAATTTTCACCATTC
+>84
+TAAAAATAATTGTCTTTAATTTCA
+>85
+TTAAAGACGCAACAACTAACATT
+>86
+TAACCTTGCAGAACTATACGATTCAAA
+>87
+TACTATTTTATTATACATACATACATTA
+>88
+TAGTGGACTTTAAAAAAAAAAAAAAAAAA
+>89
+AATGTCACTTGAAGAATTCACGT
+>90
+TAATAAGAAACTGTTCAAACAATCCAC
+>91
+AAGCACGCCTTACCACAATTTATAA
+>92
+CCATATATGACTGACTCATTTCAC
+>93
+TTAATATGTAATTTCATACCTCAC
+>94
+AGGATTTTTAAGCCCATATGTTTCC
+>95
+ACAGCAGGACGGTGATCA
+>96
+TGATGACGGGCAGCAGGGATTTTC
+>97
+TTGTAAAACATTCTTTCTCCTGAC
+>98
+TTCTTCCTTTTATCCTCTCTTAA
+>99
+ATTATTAATAAATTATTATAA
+>100
+CTGGAAACTATTGATCAAATT
+>101
+TACAACTAACATCCTTTCTTCTTCC
+>102
+TCAAATGCAAATTGGATTTATGA
+>103
+TCCTGAGGACGAGGGGCGTTTAGC
+>104
+TACACAGACTTACAAAACACATCCTTC
+>105
+GAAAGGAAGGGAAGAAAGCGAAAGGA
+>106
+TTAAACAATTTGGAATTAATT
+>107
+TAGCCTTTACTAGGCTTTTTCTAA
+>108
+CGATATTTTCTCCTCTTACCT
+>109
+TGGAATGTAAAGAAGTATGGAG
+>110
+TTTTTAACTCCCATCATTTTTCCTC
+>111
+TTTTTTATCATTTTTCACCTAAAAAA
+>112
+GAACAATTTTTCAATTTTTTACATTA
+>113
+TATGGATTATTTCAAAATTTTTTTTT
+>114
+TAACGGAGCACGAGAACGAAGTGG
+>115
+CAATTTTTAATTCCTTTTTTCTTCTT
+>116
+AGATGTTGATCTAAACTCTCCCA
+>117
+TGAGCGGAGAACCAGAGTTGATGAGC
+>118
+TAACAAATAGAACGTTCTAATTTAAA
+>119
+CTAGACAAGATGCTATAAATTTTAAA
+>120
+TTTTCTTTACCCATCTTTACTTTCCC
+>121
+TACACACTCATCAACCAAAGGACG
+>122
+TCTTATTATCATTTTTTTATCCCTT
+>123
+TCAGAGTTCTACAGGTCCTACGATT
+>124
+TTTATTACTTAGTCATAATTCCAA
+>125
+GCCGGGGCGTGAGATGTCTGCATTA
+>126
+GACGAAACGCAACAACAAAATGGACG
+>127
+TAGACTTTCTACTCATTATTAC
+>128
+AAATTGCAAAGATGGAAAATAAAACT
+>129
+CCTTACTCAACATACTTAATCATACTTA
+>130
+TGCTTGGACTACATATGGTTGAGTG
+>131
+GAATGATCGCACCACCACCTCAACGTT
+>132
+TCCACCTATTTATCTTTTCTT
+>133
+TGGACAAGAACCACGCGACGGGTGT
+>134
+CAAGATATGAACAAAGCAAAGACAC
+>135
+CAAACGGAACAAGACATCACCATC
+>136
+NATTCTTACTCCATTTCAATTTACT
+>137
+TAGAACTCGAACCAGAGCTCC
+>138
+CGGAAAAGAATGTAGACCATTTAA
+>139
+TACAAACGGAACTTTCGTCATAA
+>140
+GGTATCTTTATATTTTAATTTTCTT
+>141
+TATTCCGACAATACCTTCTTTAC
+>142
+AACTTTAAATTTTTAATAACCTT
+>143
+CATAATATAAACTTATCTT
+>144
+TATTTATAAATTTTTTCTTGAGAC
+>145
+TTTTTTTTTTGTTTTTATTTTTATCAT
+>146
+TATTATACATAGAATAACAAATCTTT
+>147
+TGGAGTAGCACAGTCGTCTGAAATC
+>148
+TATTTCTTTTTTAACTTCTTTTC
+>149
+TTATAATCACGGCACCCTATACA
+>150
+TTCTTTTACTACATATTTTTTATTTTT
+>151
+TAGCGAGATGGACCAACGTGCTGT
+>152
+CCAGAAAACAATACAACATCCTCA
+>153
+TCCGAAAACAAGGCCCGTCGCT
+>154
+TACTCAATAGAACTCTACTCACTCATA
+>155
+AACGGGGAATAAGGGTTCG
+>156
+TCAGTCTTTTTTTCTCTCCTA
+>157
+AATATAAAAATACAATCAACCATTGCA
+>158
+GGACGGAGAACTGATAAGGGCA
+>159
+TAAAGAAGAAGAATTGATTTTAAT
+>160
+TCATTACACTTCTTACAAAAC
+>161
+CCGCGATCTGCTTATTTATAATCTT
+>162
+TCTAAACACCCACGAAAATCTCTTAC
+>163
+AACAGGAAAAACAGAAGGATTTCTA
+>164
+TCTCTTTTATTTTTATCTTTCCTT
+>165
+AACATTTTATCAATTATACATTA
+>166
+GCAGATAGAAATCAATACAAAAATC
+>167
+TTAATGACACACGGGAAAAACACCG
+>168
+TACAGACAACACATACGGACTTAAGT
+>169
+TCCACAACAACTCTATCTAAAGCATT
+>170
+ATAAAGCTAGATTACCAAAGCAT
+>171
+TACCTCTTTATTAACCTCCACCTCTA
+>172
+TACACCTCTTTTTACTTTTTTATT
+>173
+CACCGAACCGGGAAGGCGAACAAC
+>174
+TAGGTACTTACCTTTTTTTTACACAA
+>175
+AGGAATATGATGAAATAAAAAAAT
+>176
+TATTATTTTTTTATTCCATTCATAT
+>177
+TAAAATAAATAAGTCCGACGACAA
+>178
+TCTGTATTTGACTTATTACTTTCTCC
+>179
+AAGGAATTAAAGCAATAATTCTAA
+>180
+TTCATTTTATTTTTAAATATCTTTTTT
+>181
+TTAGTATTAATCTTCACTTAA
+>182
+TATGGAGAAACAGCGATATAAGTCA
+>183
+CCCGAAAAGCCGAGGACGACTTA
+>184
+CACAGACTGAGGCAGAAAAAACAA
+>185
+TCAAGCCTTTTGAAGAACTGACCTAAA
+>186
+TAAGAAACTGAGCTAACGCAATGTACC
+>187
+CGATATTTTCTCCTCTGACC
+>188
+TAACTACTTTTACATTAATACTAA
+>189
+ACCAGCACCTTCCGACTCAACGTCAAA
+>190
+TCAAAGAACAATGTAAAGCCGCGAC
+>191
+TTGATTCTTCTTTTTCACAAAA
+>192
+TACAAAACAAACAAATTACAATCTAAA
+>193
+GAAACCATTATCTTATCTTTATACA
+>194
+CTATATTTTCTCTCTTACC
+>195
+TCAGAAGAACAGAGAATTGATTTT
+>196
+TAATAAATTATTAAATAAAAAAAAAA
+>197
+CCGACCGAGCAAATAAACACAGGAACG
+>198
+AAGTGAAGAAGTAGTTTTT
+>199
+TGGACGGAGAACTGATAAGGGC
+>200
+TGCTTGGACTACATATGGTTGAGGG
+>201
+TACAAGACTAAAACAAACGTGAAGT
+>202
+TGAAACTGAAACTAACATACAAAATATT
+>203
+TATCTGATCAACAATCTTTTCCCAT
+>204
+TTTAAGACTTATGAGCTTG
+>205
+CAAGGCTCAGAAGAACATCACCAAGACC
+>206
+TTCAAGTAGATTGCATTTTTTAATA
+>207
+CGCAACCAGCAGCAACTCCTAGCAT
+>208
+TACAAACGGAACTTTCTTCATAACTTC
+>209
+ACAAATCATAAATTTTTTTTTACT
+>210
+TCCGAAAAATCGTAGGACCCGGGCA
+>211
+CGCCGCAAGATGAATACTCTAATGA
+>212
+TGACCAAAGACAAACAAACAATAAATA
+>213
+AAAAGGAAAAACAGAAAAATTGGG
+>214
+TTCTTGATAACGCATCTTCTACAT
+>215
+TACTGAAACAAGGAAACACAAGC
+>216
+TCAAAAAGTAATAGGGATCGTTA
+>217
+TGGAATGTAAAGAAGTATGGAG
+>218
+TAAAATTGTAATATTTAAATAATAT
+>219
+GAGGATTAAAAGAACGGTTTATAA
+>220
+TTCTTTGACTACATATTTTTTATT
+>221
+TACAAACGTAATTTTCGCATAACATC
+>222
+AGAACAATTAAATAAAATAGCATA
+>223
+TAATAATTTAAATAAATATAAATTT
+>224
+AATTGCAACAGAGACTGGAA
+>225
+TTAAGTTTTAGACATAATCTATTACAA
+>226
+TGAAAGGAAAAACAGGACACGGGA
+>227
+AACAGGGAGATCAACAGCGTTGACA
+>228
+GGACGGAGAACTGATAATGGC
+>229
+TGTGTAATCTTTCTACTTCTTCTAC
+>230
+TTTACCAGAGGAGTCGAGTTTTT
+>231
+AAAATCGACTGCCGAAAACATTTTAA
+>232
+TGCTTGGACTACATATGGTTGAGTG
+>233
+TACAGACAACACATACGGACTTAA
+>234
+GAAGAGGAGGAGGAGTTTGTAAG
+>235
+TTACAATCTACTATTCTTTTATTA
+>236
+TTATTACATCGTCCACATATAACAAAA
+>237
+TTTTTAACTCATTTTACAATTAAAC
+>238
+AAAACCCGGACAAACCATCGGAGGA
+>239
+CAACACATGACGCGACAATTCTTG
+>240
+TACACACTCATCAACCAAAGTACGTA
+>241
+TTTTCATTTCTTCTTCAAATCCTTT
+>242
+AACAACTGCAAACATCTACCACA
+>243
+TAGTTTTAAATATTTCTTTTTTTC
+>244
+AAAGACAAAAGAAATACAGGCACT
+>245
+TTTGATACCTTTATACCATACCTATT
+>246
+ACAGCAGGACGGTGATCA
+>247
+TTCTAGCACAACACGCACACATATA
+>248
+TAATCAAAAAACTCTTCATTTTTA
+>249
+TAGGAACTTCATACCGGTCTC
+>250
+TATTTCAGCAACAGACTAAGACTAA