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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
author artbio
date Sun, 14 Jun 2020 20:27:29 -0400
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02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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1 Downloading the following reference genome: GRCh38
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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3 Beginning installation. This may take up to 40 minutes to complete.
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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4 The transcriptional reference data for GRCh38 has been saved.
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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5 All reference files have been created.
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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6 Verifying and benchmarking installation now...
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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7 Starting matrix generation for SNVs and DINUCs...Completed! Elapsed time: 2.31 seconds.
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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8 Matrices generated for 1 samples with 0 errors. Total of 9631 SNVs, 0 DINUCs, and 0 INDELs were successfully analyzed.
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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9 Installation was succesful.
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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10 SigProfilerMatrixGenerator took 2.375269651412964 seconds to complete.
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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11 To proceed with matrix_generation, please provide the path to your vcf files and an appropriate output path.
02861b32a62f "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sigmut commit bba3eb3950b8772758cc6f19747172be7413ddd9"
artbio
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12 Installation complete.