Mercurial > repos > artbio > small_rna_clusters
view test-data/clustering_2.tab @ 1:160e35e432a0 draft default tip
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_clusters commit 51dc6c56c7d95fc229ffee958354211cd454fd36"
| author | artbio |
|---|---|
| date | Sun, 09 May 2021 17:10:29 +0000 |
| parents | 8028521b6e4f |
| children |
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# Dataset Chromosome Chrom_length Coordinate Polarity Counts Start-End Cluster Size density input1.bam PbANKA_00_v3_archived_contig_1 56810 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_00_v3_archived_contig_1 56810 56810.0 F 0 56810-56810 1 0.0 input1.bam PbANKA_00_v3_archived_contig_2 34265 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_00_v3_archived_contig_2 34265 34265.0 F 0 34265-34265 1 0.0 input1.bam PbANKA_00_v3_archived_contig_3 24479 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_00_v3_archived_contig_3 24479 24479.0 F 0 24479-24479 1 0.0 input1.bam PbANKA_00_v3_archived_contig_4 10286 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_00_v3_archived_contig_4 10286 10286.0 F 0 10286-10286 1 0.0 input1.bam PbANKA_00_v3_archived_contig_5 6544 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_00_v3_archived_contig_5 6544 6544.0 F 0 6544-6544 1 0.0 input1.bam PbANKA_01_v3 515659 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_01_v3 515659 16766.0 R 1 16748-16766 19 0.05263157894736842 input1.bam PbANKA_01_v3 515659 40087.5 F 2 39959-40240 282 0.0070921985815602835 input1.bam PbANKA_01_v3 515659 56048.0 R 1 56029-56048 20 0.05 input1.bam PbANKA_01_v3 515659 87848.0 F 1 87848-87868 21 0.047619047619047616 input1.bam PbANKA_01_v3 515659 93710.0 F 1 93710-93733 24 0.041666666666666664 input1.bam PbANKA_01_v3 515659 94875.0 F 1 94875-94897 23 0.043478260869565216 input1.bam PbANKA_01_v3 515659 106098.0 F 1 106098-106116 19 0.05263157894736842 input1.bam PbANKA_01_v3 515659 146793.0 R 1 146766-146793 28 0.03571428571428571 input1.bam PbANKA_01_v3 515659 147813.0 R 1 147795-147813 19 0.05263157894736842 input1.bam PbANKA_01_v3 515659 152120.0 R 4 152043-152175 133 0.03007518796992481 input1.bam PbANKA_01_v3 515659 159077.0 F 1 159077-159096 20 0.05 input1.bam PbANKA_01_v3 515659 197781.0 R 1 197754-197781 28 0.03571428571428571 input1.bam PbANKA_01_v3 515659 226151.0 F 1 226151-226169 19 0.05263157894736842 input1.bam PbANKA_01_v3 515659 229287.0 F 1 229287-229310 24 0.041666666666666664 input1.bam PbANKA_01_v3 515659 232126.0 F 1 232126-232149 24 0.041666666666666664 input1.bam PbANKA_01_v3 515659 251747.0 R 1 251722-251747 26 0.038461538461538464 input1.bam PbANKA_01_v3 515659 254566.0 R 1 254548-254566 19 0.05263157894736842 input1.bam PbANKA_01_v3 515659 296343.0 F 1 296343-296362 20 0.05 input1.bam PbANKA_01_v3 515659 310610.0 R 1 310585-310610 26 0.038461538461538464 input1.bam PbANKA_01_v3 515659 346701.0 R 1 346679-346701 23 0.043478260869565216 input1.bam PbANKA_01_v3 515659 347834.0 R 1 347816-347834 19 0.05263157894736842 input1.bam PbANKA_01_v3 515659 350950.0 R 1 350928-350950 23 0.043478260869565216 input1.bam PbANKA_01_v3 515659 364457.0 R 1 364435-364457 23 0.043478260869565216 input1.bam PbANKA_01_v3 515659 371898.0 F 1 371898-371917 20 0.05 input1.bam PbANKA_01_v3 515659 372010.0 R 1 371989-372010 22 0.045454545454545456 input1.bam PbANKA_01_v3 515659 390223.0 F 1 390223-390247 25 0.04 input1.bam PbANKA_01_v3 515659 429607.0 R 1 429586-429607 22 0.045454545454545456 input1.bam PbANKA_01_v3 515659 431960.0 F 1 431960-431980 21 0.047619047619047616 input1.bam PbANKA_01_v3 515659 437552.0 F 1 437552-437575 24 0.041666666666666664 input1.bam PbANKA_01_v3 515659 458661.0 R 1 458638-458661 24 0.041666666666666664 input1.bam PbANKA_01_v3 515659 472535.0 R 1 472509-472535 27 0.037037037037037035 input1.bam PbANKA_01_v3 515659 475642.0 F 1 475642-475661 20 0.05 input1.bam PbANKA_01_v3 515659 496061.0 F 1 496061-496079 19 0.05263157894736842 input1.bam PbANKA_01_v3 515659 515659.0 F 0 515659-515659 1 0.0 input1.bam PbANKA_02_v3 622508 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_02_v3 622508 17507.0 R 1 17487-17507 21 0.047619047619047616 input1.bam PbANKA_02_v3 622508 57649.0 F 1 57649-57667 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 60842.0 R 1 60819-60842 24 0.041666666666666664 input1.bam PbANKA_02_v3 622508 69210.0 R 1 69183-69210 28 0.03571428571428571 input1.bam PbANKA_02_v3 622508 71569.5 F 6 71563-71604 42 0.14285714285714285 input1.bam PbANKA_02_v3 622508 72171.5 R 9 72126-72197 72 0.125 input1.bam PbANKA_02_v3 622508 122130.0 F 1 122130-122156 27 0.037037037037037035 input1.bam PbANKA_02_v3 622508 128346.0 R 1 128326-128346 21 0.047619047619047616 input1.bam PbANKA_02_v3 622508 130259.0 R 1 130241-130259 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 140068.0 R 1 140049-140068 20 0.05 input1.bam PbANKA_02_v3 622508 179183.5 F 2 179115-179280 166 0.012048192771084338 input1.bam PbANKA_02_v3 622508 215876.0 F 1 215876-215904 29 0.034482758620689655 input1.bam PbANKA_02_v3 622508 232341.0 F 1 232341-232364 24 0.041666666666666664 input1.bam PbANKA_02_v3 622508 237895.0 F 1 237895-237919 25 0.04 input1.bam PbANKA_02_v3 622508 282272.0 F 1 282272-282290 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 297002.0 R 1 296976-297002 27 0.037037037037037035 input1.bam PbANKA_02_v3 622508 305809.0 F 1 305809-305832 24 0.041666666666666664 input1.bam PbANKA_02_v3 622508 314147.0 F 1 314147-314171 25 0.04 input1.bam PbANKA_02_v3 622508 322010.0 F 1 322010-322029 20 0.05 input1.bam PbANKA_02_v3 622508 337502.0 R 1 337475-337502 28 0.03571428571428571 input1.bam PbANKA_02_v3 622508 341139.0 R 1 341115-341139 25 0.04 input1.bam PbANKA_02_v3 622508 360098.0 F 1 360098-360126 29 0.034482758620689655 input1.bam PbANKA_02_v3 622508 369344.0 R 1 369320-369344 25 0.04 input1.bam PbANKA_02_v3 622508 378777.0 R 1 378759-378777 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 379826.0 R 1 379801-379826 26 0.038461538461538464 input1.bam PbANKA_02_v3 622508 380777.0 R 1 380759-380777 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 388481.0 F 1 388481-388509 29 0.034482758620689655 input1.bam PbANKA_02_v3 622508 392346.0 F 1 392346-392364 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 411795.0 R 1 411777-411795 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 413279.0 R 1 413261-413279 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 425124.5 F 2 425065-425202 138 0.014492753623188406 input1.bam PbANKA_02_v3 622508 437540.0 R 1 437522-437540 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 444204.0 F 1 444204-444223 20 0.05 input1.bam PbANKA_02_v3 622508 450101.0 R 1 450079-450101 23 0.043478260869565216 input1.bam PbANKA_02_v3 622508 453738.0 F 1 453738-453765 28 0.03571428571428571 input1.bam PbANKA_02_v3 622508 459191.0 R 1 459165-459191 27 0.037037037037037035 input1.bam PbANKA_02_v3 622508 460037.0 R 1 460013-460037 25 0.04 input1.bam PbANKA_02_v3 622508 465942.0 F 1 465942-465961 20 0.05 input1.bam PbANKA_02_v3 622508 467197.0 F 1 467197-467215 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 470455.0 F 1 470455-470479 25 0.04 input1.bam PbANKA_02_v3 622508 496786.0 F 1 496786-496812 27 0.037037037037037035 input1.bam PbANKA_02_v3 622508 501035.0 F 1 501035-501062 28 0.03571428571428571 input1.bam PbANKA_02_v3 622508 506165.0 R 4 505631-506672 1042 0.003838771593090211 input1.bam PbANKA_02_v3 622508 520720.0 R 1 520700-520720 21 0.047619047619047616 input1.bam PbANKA_02_v3 622508 540503.0 F 1 540503-540525 23 0.043478260869565216 input1.bam PbANKA_02_v3 622508 549524.0 F 2 549359-549710 352 0.005681818181818182 input1.bam PbANKA_02_v3 622508 553762.0 F 3 553579-553972 394 0.007614213197969543 input1.bam PbANKA_02_v3 622508 603384.0 F 1 603384-603411 28 0.03571428571428571 input1.bam PbANKA_02_v3 622508 612135.0 F 1 612135-612153 19 0.05263157894736842 input1.bam PbANKA_02_v3 622508 621060.0 F 1 621060-621086 27 0.037037037037037035 input1.bam PbANKA_02_v3 622508 622508.0 F 0 622508-622508 1 0.0 input1.bam PbANKA_03_v3 659512 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_03_v3 659512 98035.0 R 1 98016-98035 20 0.05 input1.bam PbANKA_03_v3 659512 99769.5 R 2 99734-99780 47 0.0425531914893617 input1.bam PbANKA_03_v3 659512 101737.5 R 20 100269-103188 2920 0.00684931506849315 input1.bam PbANKA_03_v3 659512 114500.0 F 1 114500-114519 20 0.05 input1.bam PbANKA_03_v3 659512 118708.0 R 3 118654-118744 91 0.03296703296703297 input1.bam PbANKA_03_v3 659512 124357.5 F 5 124158-124577 420 0.011904761904761904 input1.bam PbANKA_03_v3 659512 127174.0 F 1 127174-127198 25 0.04 input1.bam PbANKA_03_v3 659512 136097.0 F 1 136097-136121 25 0.04 input1.bam PbANKA_03_v3 659512 148720.0 F 1 148720-148741 22 0.045454545454545456 input1.bam PbANKA_03_v3 659512 150558.0 F 1 150558-150579 22 0.045454545454545456 input1.bam PbANKA_03_v3 659512 160816.0 R 1 160797-160816 20 0.05 input1.bam PbANKA_03_v3 659512 173504.0 R 1 173479-173504 26 0.038461538461538464 input1.bam PbANKA_03_v3 659512 174162.0 R 1 174135-174162 28 0.03571428571428571 input1.bam PbANKA_03_v3 659512 190093.0 R 1 190069-190093 25 0.04 input1.bam PbANKA_03_v3 659512 218443.0 R 1 218421-218443 23 0.043478260869565216 input1.bam PbANKA_03_v3 659512 222427.0 F 1 222427-222446 20 0.05 input1.bam PbANKA_03_v3 659512 224118.0 F 1 224118-224141 24 0.041666666666666664 input1.bam PbANKA_03_v3 659512 233405.0 F 1 233405-233426 22 0.045454545454545456 input1.bam PbANKA_03_v3 659512 250367.0 R 1 250341-250367 27 0.037037037037037035 input1.bam PbANKA_03_v3 659512 266515.0 R 1 266491-266515 25 0.04 input1.bam PbANKA_03_v3 659512 277353.0 F 1 277353-277377 25 0.04 input1.bam PbANKA_03_v3 659512 278564.0 F 1 278564-278584 21 0.047619047619047616 input1.bam PbANKA_03_v3 659512 307249.0 R 2 307085-307392 308 0.006493506493506494 input1.bam PbANKA_03_v3 659512 308942.0 R 1 308923-308942 20 0.05 input1.bam PbANKA_03_v3 659512 321555.0 R 1 321534-321555 22 0.045454545454545456 input1.bam PbANKA_03_v3 659512 342505.0 R 1 342481-342505 25 0.04 input1.bam PbANKA_03_v3 659512 343718.0 R 1 343698-343718 21 0.047619047619047616 input1.bam PbANKA_03_v3 659512 356463.0 R 1 356439-356463 25 0.04 input1.bam PbANKA_03_v3 659512 365418.0 R 1 365399-365418 20 0.05 input1.bam PbANKA_03_v3 659512 411738.0 R 1 411716-411738 23 0.043478260869565216 input1.bam PbANKA_03_v3 659512 415822.0 R 1 415794-415822 29 0.034482758620689655 input1.bam PbANKA_03_v3 659512 419189.0 F 3 419145-419256 112 0.026785714285714284 input1.bam PbANKA_03_v3 659512 487905.0 F 1 487905-487930 26 0.038461538461538464 input1.bam PbANKA_03_v3 659512 489489.0 F 1 489489-489514 26 0.038461538461538464 input1.bam PbANKA_03_v3 659512 490743.0 F 1 490743-490764 22 0.045454545454545456 input1.bam PbANKA_03_v3 659512 492941.0 F 1 492941-492965 25 0.04 input1.bam PbANKA_03_v3 659512 498202.0 F 1 498202-498222 21 0.047619047619047616 input1.bam PbANKA_03_v3 659512 500500.5 F 2 500420-500599 180 0.011111111111111112 input1.bam PbANKA_03_v3 659512 538102.0 F 1 538102-538127 26 0.038461538461538464 input1.bam PbANKA_03_v3 659512 539066.0 R 1 539048-539066 19 0.05263157894736842 input1.bam PbANKA_03_v3 659512 545334.0 F 1 545334-545358 25 0.04 input1.bam PbANKA_03_v3 659512 546068.0 F 1 546068-546088 21 0.047619047619047616 input1.bam PbANKA_03_v3 659512 549114.0 R 1 549093-549114 22 0.045454545454545456 input1.bam PbANKA_03_v3 659512 551216.0 R 1 551194-551216 23 0.043478260869565216 input1.bam PbANKA_03_v3 659512 554505.0 R 1 554486-554505 20 0.05 input1.bam PbANKA_03_v3 659512 581916.0 F 1 581916-581934 19 0.05263157894736842 input1.bam PbANKA_03_v3 659512 585334.0 F 1 585334-585360 27 0.037037037037037035 input1.bam PbANKA_03_v3 659512 594925.0 F 1 594925-594944 20 0.05 input1.bam PbANKA_03_v3 659512 614824.0 R 7 614787-614842 56 0.125 input1.bam PbANKA_03_v3 659512 617077.0 F 1 617077-617101 25 0.04 input1.bam PbANKA_03_v3 659512 617623.0 F 1 617623-617646 24 0.041666666666666664 input1.bam PbANKA_03_v3 659512 636624.0 F 1 636624-636649 26 0.038461538461538464 input1.bam PbANKA_03_v3 659512 640131.0 F 1 640131-640155 25 0.04 input1.bam PbANKA_03_v3 659512 659512.0 F 0 659512-659512 1 0.0 input1.bam PbANKA_04_v3 712327 1.0 F 0 1-1 1 0.0 input1.bam PbANKA_04_v3 712327 6468.0 R 1 6444-6468 25 0.04 input1.bam PbANKA_04_v3 712327 19440.0 F 1 19440-19460 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 26389.0 R 1 26369-26389 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 30215.0 R 1 30191-30215 25 0.04 input1.bam PbANKA_04_v3 712327 41739.0 F 1 41739-41765 27 0.037037037037037035 input1.bam PbANKA_04_v3 712327 48183.0 F 2 48102-48282 181 0.011049723756906077 input1.bam PbANKA_04_v3 712327 56307.0 F 1 56307-56327 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 66782.0 F 1 66782-66802 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 82152.0 F 1 82152-82174 23 0.043478260869565216 input1.bam PbANKA_04_v3 712327 85485.0 F 1 85485-85512 28 0.03571428571428571 input1.bam PbANKA_04_v3 712327 96254.0 R 1 96234-96254 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 106999.0 R 1 106978-106999 22 0.045454545454545456 input1.bam PbANKA_04_v3 712327 127446.0 R 1 127428-127446 19 0.05263157894736842 input1.bam PbANKA_04_v3 712327 134946.0 R 1 134926-134946 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 159445.0 R 1 159425-159445 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 163500.0 F 1 163500-163522 23 0.043478260869565216 input1.bam PbANKA_04_v3 712327 166716.5 F 2 166716-166737 22 0.09090909090909091 input1.bam PbANKA_04_v3 712327 188659.0 R 1 188641-188659 19 0.05263157894736842 input1.bam PbANKA_04_v3 712327 207209.0 R 1 207190-207209 20 0.05 input1.bam PbANKA_04_v3 712327 244916.0 R 2 244896-244917 22 0.09090909090909091 input1.bam PbANKA_04_v3 712327 245784.0 R 2 245701-245841 141 0.014184397163120567 input1.bam PbANKA_04_v3 712327 248131.5 R 9 247286-248953 1668 0.00539568345323741 input1.bam PbANKA_04_v3 712327 249592.5 R 3 249516-249650 135 0.022222222222222223 input1.bam PbANKA_04_v3 712327 254227.0 F 1 254227-254255 29 0.034482758620689655 input1.bam PbANKA_04_v3 712327 273985.0 R 1 273965-273985 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 277051.0 R 1 277031-277051 21 0.047619047619047616 input1.bam PbANKA_04_v3 712327 281427.0 F 1 281427-281448 22 0.045454545454545456 input1.bam PbANKA_04_v3 712327 324488.0 F 14 324463-324534 72 0.19444444444444445 input1.bam PbANKA_04_v3 712327 325108.0 R 2 325079-325111 33 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