Mercurial > repos > artbio > small_rna_maps

comparison small_rna_maps.xml @ 29:8b5695592784 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit c3d728b98db4987821feae40952d9797c97eaf5a"
author artbio
date Fri, 04 Oct 2019 04:33:53 -0400
parents 14adf24603b6
children 183bf49fe77c
comparison
equal deleted inserted replaced
28:14adf24603b6 29:8b5695592784
1 <tool id="small_rna_maps" name="small_rna_maps" version="2.14.0"> 1 <tool id="small_rna_maps" name="small_rna_maps" version="2.15.0">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement> 4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement> 5 <requirement type="package" version="0.15.3=py27hda2845c_1">pysam</requirement>
6 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> 6 <requirement type="package" version="1.6.4=r36h6115d3f_0">r-optparse</requirement>
7 <requirement type="package" version="0.6_28=r3.3.2_0">r-latticeextra</requirement> 7 <requirement type="package" version="0.6_28=r36h6115d3f_1002">r-latticeextra</requirement>
8 <requirement type="package" version="2.2.1=r3.3.2_0">r-gridextra</requirement> 8 <requirement type="package" version="2.3=r36h6115d3f_1002">r-gridextra</requirement>
9 <requirement type="package" version="1.4.2=r3.3.2_0">r-reshape2</requirement> 9 <requirement type="package" version="1.4.3=r36h29659fb_0">r-reshape2</requirement>
10 <requirement type="package" version="0.6.6">sambamba</requirement> 10 <requirement type="package" version="0.6.6">sambamba</requirement>
11 <requirement type="package" version="1.9=h10a08f8_12">samtools</requirement>
12 <requirement type="package" version="64.2=he1b5a44_1">icu</requirement>
11 </requirements> 13 </requirements>
12 <stdio> 14 <stdio>
13 <exit_code range="1:" level="fatal" description="Tool exception" /> 15 <exit_code range="1:" level="fatal" description="Tool exception" />
14 </stdio> 16 </stdio>
15 <command detect_errors="exit_code"><![CDATA[ 17 <command detect_errors="exit_code"><![CDATA[
77 ]]></command> 79 ]]></command>
78 <inputs> 80 <inputs>
79 <param name="inputs" type="data" format="bam" label="Select a alignment files to parse" multiple="true" 81 <param name="inputs" type="data" format="bam" label="Select a alignment files to parse" multiple="true"
80 help="maps from these bam inputs will be collected in a single pdf output" /> 82 help="maps from these bam inputs will be collected in a single pdf output" />
81 <param name="normalization" type="text" label="Enter a size/normalization factor." 83 <param name="normalization" type="text" label="Enter a size/normalization factor."
82 help="Enter normalisation factors separated by space eg [0.75 1.23 1.1], no normalization if no values" value="1"/> 84 help="Enter normalisation factors separated by space eg [0.75 1.23 1.1], no normalization if no values,
85 ignored if a single sample"
86 value="1"/>
83 <param name="minsize" type="integer" label="Minimal size of reads for inclusion in analysis" 87 <param name="minsize" type="integer" label="Minimal size of reads for inclusion in analysis"
84 value="19" help="default value: 19" /> 88 value="19" help="default value: 19" />
85 <param name="maxsize" type="integer" label="Maximal size of reads for inclusion in analysis" 89 <param name="maxsize" type="integer" label="Maximal size of reads for inclusion in analysis"
86 value="29" help="default value: 29" /> 90 value="29" help="default value: 29" />
87 <conditional name="plots_options"> 91 <conditional name="plots_options">