Mercurial > repos > artbio > small_rna_maps
comparison small_rna_maps.py @ 19:f33afecac67a draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit ee61e232fbde2e4f9b222607ba928bceaf271289
author | artbio |
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date | Thu, 22 Nov 2018 20:05:32 -0500 |
parents | 2c95c899d0a4 |
children | de7fbcb1348c |
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18:2c95c899d0a4 | 19:f33afecac67a |
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300 line = [self.sample_name, key[0], self.chromosomes[key[0]], | 300 line = [self.sample_name, key[0], self.chromosomes[key[0]], |
301 key[1], key[2], clustered_dic[key][0], | 301 key[1], key[2], clustered_dic[key][0], |
302 str(start) + "-" + str(end), str(size), str(density)] | 302 str(start) + "-" + str(end), str(size), str(density)] |
303 line = [str(i) for i in line] | 303 line = [str(i) for i in line] |
304 if size > skip: | 304 if size > skip: |
305 bedline = [key[0], str(start-1), str(end), 'cluster', '.', | 305 bedline = [key[0], str(start-1), str(end), 'cluster', |
306 polarity] | 306 str(clustered_dic[key][0]), polarity] |
307 bed.write('\t'.join(bedline) + '\n') | 307 bed.write('\t'.join(bedline) + '\n') |
308 out.write('\t'.join(line) + '\n') | 308 out.write('\t'.join(line) + '\n') |
309 bed.close() | 309 bed.close() |
310 | 310 |
311 | 311 |