Mercurial > repos > artbio > small_rna_maps

comparison small_rna_maps.xml @ 31:f82badb66c34 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit 7e2694ed482bd75245793e2cfe0b5277233047c3"
author artbio
date Sun, 06 Oct 2019 21:11:19 -0400
parents 183bf49fe77c
children f2e7ad3058e8
comparison
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30:183bf49fe77c 31:f82badb66c34
1 <tool id="small_rna_maps" name="small_rna_maps" version="2.16.0"> 1 <tool id="small_rna_maps" name="small_rna_maps" version="2.16.1">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement> 4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
5 <requirement type="package" version="0.15.3=py27hda2845c_1">pysam</requirement> 5 <requirement type="package" version="0.15.3=py27hda2845c_1">pysam</requirement>
6 <requirement type="package" version="1.6.4=r36h6115d3f_0">r-optparse</requirement> 6 <requirement type="package" version="1.6.4=r36h6115d3f_0">r-optparse</requirement>
301 <output file="input_single_chr_x_6_single_plot_coverage.tab" name="output_tab" /> 301 <output file="input_single_chr_x_6_single_plot_coverage.tab" name="output_tab" />
302 <output file="input_single_chr_x_6_single_plot_coverage.pdf" name="output_pdf" /> 302 <output file="input_single_chr_x_6_single_plot_coverage.pdf" name="output_pdf" />
303 </test> 303 </test>
304 <test> <!-- 13 --> 304 <test> <!-- 13 -->
305 <param name="inputs" value="size1.bam,size2.bam" ftype="bam" /> 305 <param name="inputs" value="size1.bam,size2.bam" ftype="bam" />
306 <param name="normalization" value="1.0 2.5" />
307 <param name="plots_options_selector" value="one_plot" />
308 <param name="first_plot" value="Coverage" />
309 <output file="coverage.tab" name="output_tab" />
310 <output file="coverage.pdf" name="output_pdf" />
311 </test>
312 <test> <!-- 14 -->
313 <param name="inputs" value="size1.bam,size2.bam" ftype="bam" />
306 <param name="normalization" value="2.0 1.0" /> 314 <param name="normalization" value="2.0 1.0" />
307 <param name="plots_options_selector" value="global" /> 315 <param name="plots_options_selector" value="global" />
308 <param name="mergestrands" value="nomerge" /> 316 <param name="mergestrands" value="nomerge" />
309 <param name="first_plot" value="Size" /> 317 <param name="first_plot" value="Size" />
310 <output file="size12.tab" name="output_tab" /> 318 <output file="size12.tab" name="output_tab" />
311 <output file="global_nomerge.pdf" name="output_pdf" /> 319 <output file="global_nomerge.pdf" name="output_pdf" />
312 </test> 320 </test>
313 <test> <!-- 14 --> 321 <test> <!-- 15 -->
314 <param name="inputs" value="size1.bam,size2.bam" ftype="bam" /> 322 <param name="inputs" value="size1.bam,size2.bam" ftype="bam" />
315 <param name="normalization" value="2.0 1.0" /> 323 <param name="normalization" value="2.0 1.0" />
316 <param name="plots_options_selector" value="global" /> 324 <param name="plots_options_selector" value="global" />
317 <param name="mergestrands" value="merge" /> 325 <param name="mergestrands" value="merge" />
318 <param name="first_plot" value="Size" /> 326 <param name="first_plot" value="Size" />