Mercurial > repos > artbio > small_rna_maps
diff small_rna_maps.py @ 28:14adf24603b6 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit ebb322e2ed6989d2a7520e8c5ffc7a7477907aef
author | artbio |
---|---|
date | Thu, 25 Apr 2019 12:49:05 -0400 |
parents | fe1a9cfaf5c3 |
children | 8b5695592784 |
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--- a/small_rna_maps.py Wed Apr 24 11:18:24 2019 -0400 +++ b/small_rna_maps.py Thu Apr 25 12:49:05 2019 -0400 @@ -89,12 +89,8 @@ else: for read in bam_object.fetch(chrom): positions = read.positions # a list of covered positions - if read.is_reverse: - map_dictionary[(chrom, positions[-1]+1, 'F')].append( - read.query_alignment_length) - else: - map_dictionary[(chrom, positions[0]+1, 'F')].append( - read.query_alignment_length) + map_dictionary[(chrom, positions[0]+1, 'F')].append( + read.query_alignment_length) return map_dictionary def grouper(self, iterable, clust_distance):