Mercurial > repos > artbio > small_rna_maps

diff small_rna_maps.xml @ 11:a561a71bd7d7 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit c24bbb6d53574eb1c1eb8d219cf2a39a9ed5b3ff
author artbio
date Tue, 06 Mar 2018 06:11:55 -0500
parents c3fb2a864526
children d33263e6e812
line wrap: on
line diff
--- a/small_rna_maps.xml	Tue Nov 07 17:38:39 2017 -0500
+++ b/small_rna_maps.xml	Tue Mar 06 06:11:55 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="small_rna_maps" name="small_rna_maps" version="2.4.1">
+<tool id="small_rna_maps" name="small_rna_maps" version="2.4.3">
   <description></description>
   <requirements>
         <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
@@ -267,6 +267,43 @@
             <output file="size-count_normed.pdf" name="output_pdf" />
         </test>
         <test>
+            <param name="inputs" value="input_single_chr.bam" ftype="bam"/>
+            <param name="minsize" value="0" />
+            <param name="maxsize" value="10000" />
+            <param name="cluster" value="0" />
+            <param name="plots_options_selector" value="two_plot" />
+            <param name="first_plot" value="Counts" />
+            <param name="extra_plot" value="Coverage" />
+            <param name="normalization" value="1 1" />
+            <output file="count_1_chr.tab" name="output_tab" />
+            <output file="coverage_1_chr.tab" name="extra_output_tab" />
+            <output file="counts_coverage_1.pdf" name="output_pdf" />
+        </test>
+        <test>
+            <param name="inputs" value="input_5_chr.bam" ftype="bam"/>
+            <param name="minsize" value="0" />
+            <param name="maxsize" value="10000" />
+            <param name="cluster" value="0" />
+            <param name="plots_options_selector" value="two_plot" />
+            <param name="first_plot" value="Counts" />
+            <param name="extra_plot" value="Coverage" />
+            <param name="normalization" value="1 1" />
+            <output file="count_5_chr.tab" name="output_tab" />
+            <output file="coverage_5_chr.tab" name="extra_output_tab" />
+            <output file="counts_coverage_5.pdf" name="output_pdf" />
+        </test>
+        <test>
+            <param name="inputs" value="input_single_chr.bam" ftype="bam"/>
+            <param name="minsize" value="0" />
+            <param name="maxsize" value="10000" />
+            <param name="cluster" value="0" />
+            <param name="plots_options_selector" value="one_plot" />
+            <param name="first_plot" value="Counts" />
+            <param name="normalization" value="1 1" />
+            <output file="count_1_chr.tab" name="output_tab" />
+            <output file="count_1.pdf" name="output_pdf" />
+        </test>
+        <test>
             <param name="inputs" value="input1.bam,input2.bam" ftype="bam"/>
             <param name="minsize" value="0" />
             <param name="cluster" value="0" />