# HG changeset patch # User artbio # Date 1523369584 14400 # Node ID cd75c72e1d7558eeeb9f9ded826223de60b5ceab # Parent 458a88317c225da117cdbf8e85c352b9fc41f61c planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit 5c55f75e094983228200111277fef7f349507174 diff -r 458a88317c22 -r cd75c72e1d75 small_rna_maps.r --- a/small_rna_maps.r Tue Apr 10 06:12:01 2018 -0400 +++ b/small_rna_maps.r Tue Apr 10 10:13:04 2018 -0400 @@ -173,8 +173,8 @@ title_extra_method = list(Counts="Read Counts", Coverage="Coverage depths", Median="Median sizes", Mean="Mean sizes", Size="Size Distributions") legend_first_method =list(Counts="Read count", Coverage="Coverage depth", Median="Median size", Mean="Mean size", Size="Read count") legend_extra_method =list(Counts="Read count", Coverage="Coverage depth", Median="Median size", Mean="Mean size", Size="Read count") -bottom_first_method =list(Counts="Coordinates (nbre of bases)",Coverage="Coordinates (nbre of bases)", Median="Coordinates (nbre of bases)", Mean="Coordinates (nbre of bases)", Size="Sizes of reads") -bottom_extra_method =list(Counts="Coordinates (nbre of bases)",Coverage="Coordinates (nbre of bases)", Median="Coordinates (nbre of bases)", Mean="Coordinates (nbre of bases)", Size="Sizes of reads") +bottom_first_method =list(Counts="Coordinates (nucleotides)",Coverage="Coordinates (nucleotides)", Median="Coordinates (nucleotides)", Mean="Coordinates (nucleotides)", Size="Sizes of reads") +bottom_extra_method =list(Counts="Coordinates (nucleotides)",Coverage="Coordinates (nucleotides)", Median="Coordinates (nucleotides)", Mean="Coordinates (nucleotides)", Size="Sizes of reads") ## Plotting Functions diff -r 458a88317c22 -r cd75c72e1d75 small_rna_maps.xml --- a/small_rna_maps.xml Tue Apr 10 06:12:01 2018 -0400 +++ b/small_rna_maps.xml Tue Apr 10 10:13:04 2018 -0400 @@ -1,4 +1,4 @@ - + numpy diff -r 458a88317c22 -r cd75c72e1d75 test-data/global_merge.pdf Binary file test-data/global_merge.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/global_merge_20-30.pdf Binary file test-data/global_merge_20-30.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/global_nomerge.pdf Binary file test-data/global_nomerge.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/input1__single_plot_mean.pdf Binary file test-data/input1__single_plot_mean.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/input1_cluster5_single_plot_coverage.pdf Binary file test-data/input1_cluster5_single_plot_coverage.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/input1_input2_double_plot_counts_size_ylimneg5_5.pdf Binary file test-data/input1_input2_double_plot_counts_size_ylimneg5_5.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/input1_input2_norm_1_2_single_plot_counts.pdf Binary file test-data/input1_input2_norm_1_2_single_plot_counts.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/input1_min20_max30_single_plot_size.pdf Binary file test-data/input1_min20_max30_single_plot_size.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/input1_single_plot_median.pdf Binary file test-data/input1_single_plot_median.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/input1_yminneg5_5_single_plot_counts.pdf Binary file test-data/input1_yminneg5_5_single_plot_counts.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/input_single_chr_x_6_single_plot_coverage.pdf Binary file test-data/input_single_chr_x_6_single_plot_coverage.pdf has changed diff -r 458a88317c22 -r cd75c72e1d75 test-data/size20-30.tab --- a/test-data/size20-30.tab Tue Apr 10 06:12:01 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,263 +0,0 @@ -Dataset Chromosome Polarity Size Counts -input1.bam FBtr0070001 F 20 4 -input1.bam FBtr0070001 F 21 4 -input1.bam FBtr0070001 F 22 29 -input1.bam FBtr0070001 F 23 15 -input1.bam FBtr0070001 F 24 1 -input1.bam 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