Mercurial > repos > artbio > small_rna_signatures

comparison overlapping_reads.xml @ 7:07771982ef9b draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures commit 7276b6b73aef7af4058ad2c1e34c4557e9cccbe0
author artbio
date Sun, 10 Sep 2017 13:50:40 -0400
parents 4da23f009c9e
children 5c4504825d74
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6:4da23f009c9e 7:07771982ef9b
118 nreads=1 stands for the number of reads of the sequence in the dataset. 118 nreads=1 stands for the number of reads of the sequence in the dataset.
119 119
120 the second sequence in this example corresponds to 1 read that overlap by 10 nt with 120 the second sequence in this example corresponds to 1 read that overlap by 10 nt with
121 1 read of the first sequence. 121 1 read of the first sequence.
122 122
123 The tool also returns in the standard output the numbers of pairs of reads that
124 can be formed simultaneously in silico. Note that these numbers are distinct from the numbers
125 of pairs of read alignments (as computed by the small_rna_signature tool) when analysis is
126 performed with multi-mapping reads.
127
123 </help> 128 </help>
124 <citations> 129 <citations>
125 <citation type="doi">10.1007/978-1-4939-0931-5_12</citation> 130 <citation type="doi">10.1007/978-1-4939-0931-5_12</citation>
126 </citations> 131 </citations>
127 </tool> 132 </tool>