# HG changeset patch
# User artbio
# Date 1504348515 14400
# Node ID 4d9682bd3a6b71a90f2dea9ac0a531bba2a29781
# Parent  320e06bf99b9d6601bd6906c310d521dd50e754d
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures commit 96ed5824190aff281cc3aa47dc60fc66aac41db3

diff -r 320e06bf99b9 -r 4d9682bd3a6b overlapping_reads.py
--- a/overlapping_reads.py	Wed Aug 30 05:40:18 2017 -0400
+++ b/overlapping_reads.py	Sat Sep 02 06:35:15 2017 -0400
@@ -36,90 +36,106 @@
         self.bam_object = pysam.AlignmentFile(bam_file, 'rb')
         self.chromosomes = dict(zip(self.bam_object.references,
                                 self.bam_object.lengths))
-        self.map_dict = self.create_map(self.bam_object)
+        self.all_query_positions = self.query_positions(self.bam_object)
+        self.readdic = self.make_readdic(self.bam_object)
 
-    def create_map(self, bam_object):
-        '''
-        Returns a map_dictionary {(chromosome,read_position,polarity):
-                                                    [read_length, ...]}
-        '''
-        map_dictionary = defaultdict(list)
-        # get empty value for start and end of each chromosome
-        for chrom in self.chromosomes:
-            map_dictionary[(chrom, 1, 'F')] = []
-            map_dictionary[(chrom, self.chromosomes[chrom], 'F')] = []
+    def make_readdic(self, bam_object):
+        readdic = defaultdict(int)
+        for read in bam_object.fetch():
+            readdic[read.query_sequence] += 1
+        return readdic
+
+    def query_positions(self, bam_object):
+        all_query_positions = defaultdict(list)
         for chrom in self.chromosomes:
             for read in bam_object.fetch(chrom):
-                positions = read.positions  # a list of covered positions
-                if read.is_reverse:
-                    map_dictionary[(chrom, positions[-1]+1,
-                                    'R')].append(read.query_alignment_length)
+                if not read.is_reverse:
+                    all_query_positions[chrom].append(
+                        read.get_reference_positions(full_length=True)[0])
                 else:
-                    map_dictionary[(chrom, positions[0]+1,
-                                    'F')].append(read.query_alignment_length)
-        return map_dictionary
+                    all_query_positions[chrom].append(
+                        read.get_reference_positions(full_length=True)[-1])
+            all_query_positions[chrom] = sorted(
+                list(set(all_query_positions[chrom])))
+        return all_query_positions
 
-    def signature_tables(self, minquery, maxquery, mintarget, maxtarget):
+    def direct_pairing(self, minquery, maxquery, mintarget, maxtarget,
+                       file, overlap=10):
+        F = open(file, 'w')
         query_range = range(minquery, maxquery + 1)
         target_range = range(mintarget, maxtarget + 1)
-        Query_table = defaultdict(dict)
-        Target_table = defaultdict(dict)
-        for key in self.map_dict:
-            for size in self.map_dict[key]:
-                if size in query_range or size in target_range:
-                    if key[2] == 'F':
-                        coordinate = key[1]
-                    else:
-                        coordinate = -key[1]
-                if size in query_range:
-                    Query_table[key[0]][coordinate] = Query_table[key[0]].get(
-                        coordinate, 0) + 1
-                if size in target_range:
-                    Target_table[key[0]][coordinate] = \
-                        Target_table[key[0]].get(coordinate, 0) + 1
-        return Query_table, Target_table
-
-    def search_overlaps(self, minquery, maxquery, mintarget, maxtarget,
-                        overlap=10):
-        Query_table, Target_table = self.signature_tables(minquery, maxquery,
-                                                          mintarget, maxtarget)
-        overlap_groups = defaultdict(list)
-        for chrom in Query_table:
-            for coord in Query_table[chrom]:
-                if Target_table[chrom].get(-coord - overlap + 1, 0):
-                    overlap_groups[chrom].append(coord)
-        return overlap_groups
-
-    def feed_overlaps(self, overlap_groups, minquery, output, overlap=10):
-        F = open(output, 'w')
-        for chrom in sorted(overlap_groups):
-            for pos in sorted(overlap_groups[chrom]):
-                if pos > 0:  # read are forward
-                    reads = self.bam_object.fetch(chrom, start=pos-1,
-                                                  end=pos-1+overlap-1)
-                    for read in reads:
-                        positions = read.positions
-                        if pos-1 == positions[0] and \
-                                read.query_alignment_length >= minquery:
-                            F.write('>%s|%s|%s|%s\n%s\n' % (
-                                chrom, pos, 'F',
-                                read.query_alignment_length,
-                                read.query_sequence))
-                else:  # reads are reverse
-                    reads = self.bam_object.fetch(chrom,
-                                                  start=-pos-1-overlap+1,
-                                                  end=-pos-1)
-                    for read in reads:
-                        positions = read.positions
-                        if -pos-1 == positions[-1] and \
-                                read.query_alignment_length >= minquery:
-                            readseq = self.revcomp(read.query_sequence)
-                            readsize = read.query_alignment_length
-                            F.write('>%s|%s|%s|%s\n%s\n' % (chrom,
-                                                       positions[0] + 1,
-                                                       'R', readsize, readseq))
-        F.close()
-        return
+        stringresult = []
+        for chrom in sorted(self.chromosomes):
+            for pos in (self.all_query_positions[chrom]):
+                iterreads_1 = self.bam_object.fetch(chrom,
+                                                    start=pos, end=pos+overlap-1)
+                iterreads_2 = self.bam_object.fetch(chrom,
+                                                    start=pos, end=pos+overlap-1)
+                iterreads_3 = self.bam_object.fetch(chrom,
+                                                    start=pos, end=pos+overlap-1)
+                iterreads_4 = self.bam_object.fetch(chrom,
+                                                    start=pos, end=pos+overlap-1)
+                #  1
+                for queryread in iterreads_1:
+                    if queryread.get_reference_positions(
+                        full_length=True)[0] == pos and \
+                        queryread.query_alignment_length in query_range \
+                            and not queryread.is_reverse:
+                        for targetread in iterreads_2:
+                            if (targetread.
+                                get_reference_positions(full_length=True)[-1]
+                                == queryread.get_reference_positions(
+                                   full_length=True)[overlap-1] and
+                                targetread.query_alignment_length in
+                                    target_range and targetread.is_reverse):
+                                targetreadseq = self.revcomp(
+                                    targetread.query_sequence)
+                                stringresult.append(
+                                    '>%s|%s|%s|%s|n=%s\n%s\n' %
+                                    (chrom, queryread.get_reference_positions(
+                                     full_length=True)[0]+1,
+                                     'F', queryread.query_alignment_length,
+                                     self.readdic[queryread.query_sequence],
+                                     queryread.query_sequence))
+                                stringresult.append(
+                                    '>%s|%s|%s|%s|n=%s\n%s\n' %
+                                    (chrom, targetread.get_reference_positions(
+                                     full_length=True)[0]+1,
+                                     'R', targetread.query_alignment_length,
+                                     self.readdic[targetread.query_sequence],
+                                     targetreadseq))
+                #  2
+                for queryread in iterreads_3:
+                    if queryread.get_reference_positions(
+                        full_length=True)[-1] == pos+overlap-1 and \
+                        queryread.query_alignment_length in query_range \
+                            and queryread.is_reverse:
+                        for targetread in iterreads_4:
+                            if (targetread.
+                                get_reference_positions(full_length=True)[0]
+                                == pos and targetread.query_alignment_length
+                                    in target_range and not
+                                    targetread.is_reverse):
+                                queryreadseq = self.revcomp(
+                                    queryread.query_sequence)
+                                targetreadseq = targetread.query_sequence
+                                stringresult.append(
+                                    '>%s|%s|%s|%s|n=%s\n%s\n' %
+                                    (chrom, queryread.get_reference_positions(
+                                     full_length=True)[0]+1, 'R',
+                                     queryread.query_alignment_length,
+                                     self.readdic[queryread.query_sequence],
+                                     queryreadseq))
+                                stringresult.append(
+                                    '>%s|%s|%s|%s|n=%s\n%s\n' %
+                                    (chrom, targetread.get_reference_positions(
+                                     full_length=True)[0]+1,
+                                     'F', targetread.query_alignment_length,
+                                     self.readdic[targetread.query_sequence],
+                                     targetreadseq))
+        stringresult = sorted(set(stringresult),
+                              key=lambda x: stringresult.index(x))
+        F.write(''.join(stringresult))
 
     def revcomp(self, sequence):
         antidict = {"A": "T", "T": "A", "G": "C", "C": "G", "N": "N"}
@@ -129,12 +145,11 @@
 
 def main(input, minquery, maxquery, mintarget, maxtarget, output, overlap=10):
     mapobj = Map(input)
-    mapobj.feed_overlaps(mapobj.search_overlaps(minquery, maxquery,
-                                                mintarget, maxtarget,
-                                                overlap), minquery, output)
+    mapobj.direct_pairing(minquery, maxquery, mintarget, maxtarget,
+                          output, overlap)
 
 
 if __name__ == "__main__":
     args = Parser()
     main(args.input, args.minquery, args.maxquery, args.mintarget,
-         args.maxtarget, args.output)
+         args.maxtarget, args.output, args.overlap)
diff -r 320e06bf99b9 -r 4d9682bd3a6b overlapping_reads.xml
--- a/overlapping_reads.xml	Wed Aug 30 05:40:18 2017 -0400
+++ b/overlapping_reads.xml	Sat Sep 02 06:35:15 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="overlapping_reads" name="Get overlapping reads" version="0.9.1">
+<tool id="overlapping_reads" name="Get overlapping reads" version="0.9.2">
     <description />
     <requirements>
         <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement>
@@ -38,6 +38,15 @@
             <param name="overlap" value="10" />
             <output file="paired.fa" ftype="fasta" name="output" />
         </test>
+        <test>
+            <param ftype="bam" name="input" value="sr_bowtie.bam" />
+            <param name="minquery" value="20" />
+            <param name="maxquery" value="22" />
+            <param name="mintarget" value="23" />
+            <param name="maxtarget" value="29" />
+            <param name="overlap" value="10" />
+            <output file="paired_2.fa" ftype="fasta" name="output" />
+        </test>
     </tests>
     <help>
 
@@ -52,24 +61,43 @@
 
 **Input**
 
-A **sorted** BAM alignment file.
+*A **sorted** BAM alignment file.*
+
+*Query and target sizes:*
+
+The algorithm search for each *query* reads (of specified size) in the bam alignment if
+there are *target* reads (of specified size) that align on the opposite strand with a 10 nt
+overlap.
+
+Searching query reads of 20-22 nt that overlap by 10 nt with target
+reads of 23-29 nt is different from searching query reads of 23-29 nt that overlap by 10 nt
+with target reads of 20-22 nt. i.e, searching for siRNAs that pair with piRNAs is distinct
+from searching for siRNAs that pairs with piRNAs, although of course the number of possibly
+formed piRNA/siRNA pairs is the same as the number of possibly formed siRNA/piRNA pairs.
+
+*Overlap*
+The number of nucleotides by which the pairs of sequences will overlap
+
+
 
 **Outputs**
 
 a fasta file of pairable reads such as :
 
->FBgn0000004_17.6|5839|R|26
+>FBgn0000004_17.6|5855|F|23|n=1
+
+TTGACGAAAATGATCGAGTGGAT
+
+>FBgn0000004_17.6|5839|R|26|n=1
 
 TTTTCGTCAATTGTGCCAAATAGGTA
 
->FBgn0000004_17.6|5855|F|23
-
-TTGACGAAAATGATCGAGTGGAT
+where FBgn0000004_17.6 stands for the chromosome, 5839 stands for the 1-based read position, 
+R stand for reverse strand (F forward strand), 26 stands for the size of the sequence and
+n=1 stands for the number of reads of the sequence in the dataset.
 
-where FBgn0000004_17.6 stands for the chromosome, 5839 stands for the 1-based read position, 
-R stand for reverse strand (F forward strand) and 26 stands for the size of the read.
-
-the second sequence in this example is a read that overlap by 10 nt with the first read.
+the second sequence in this example corresponds to 1 read that overlap by 10 nt with
+1 read of the first sequence.
 
         </help>
     <citations>
diff -r 320e06bf99b9 -r 4d9682bd3a6b test-data/paired.fa
--- a/test-data/paired.fa	Wed Aug 30 05:40:18 2017 -0400
+++ b/test-data/paired.fa	Sat Sep 02 06:35:15 2017 -0400
@@ -1,2182 +1,668 @@
->FBgn0000004_17.6|5839|R|26
-TTTTCGTCAATTGTGCCAAATAGGTA
->FBgn0000004_17.6|5855|F|23
+>FBgn0000004_17.6|5855|F|23|n=1
 TTGACGAAAATGATCGAGTGGAT
->FBgn0000006_412|744|R|26
-TTTCGACCAAACCGGTGGCGTTTGCT
->FBgn0000006_412|744|R|26
-TTTCGACCAAACCGGTGGCGTTTGCT
->FBgn0000006_412|745|R|25
-TTTCGACCAAACCGGTGGCGTTTGC
->FBgn0000006_412|742|R|27
+>FBgn0000004_17.6|5839|R|26|n=1
+TTTTCGTCAATTGTGCCAAATAGGTA
+>FBgn0000006_412|759|F|24|n=3
+TTTGGTCGAAAGCTCTAAAGCTAC
+>FBgn0000006_412|742|R|27|n=1
 TTCGACCAAACCGGTGGCGTTTGCTGA
->FBgn0000006_412|744|R|25
-TTCGACCAAACCGGTGGCGTTTGCT
->FBgn0000006_412|744|R|25
+>FBgn0000006_412|744|R|25|n=2
 TTCGACCAAACCGGTGGCGTTTGCT
->FBgn0000006_412|745|R|24
-TTCGACCAAACCGGTGGCGTTTGC
->FBgn0000006_412|745|R|24
+>FBgn0000006_412|745|R|24|n=2
 TTCGACCAAACCGGTGGCGTTTGC
->FBgn0000006_412|759|F|24
-TTTGGTCGAAAGCTCTAAAGCTAC
->FBgn0000006_412|759|F|24
-TTTGGTCGAAAGCTCTAAAGCTAC
->FBgn0000006_412|759|F|24
-TTTGGTCGAAAGCTCTAAAGCTAC
->FBgn0000006_412|759|F|25
+>FBgn0000006_412|759|F|25|n=1
 TTTGGTCGAAAGCTCTAAAGCTACA
->FBgn0000006_412|759|F|27
-TTTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000006_412|759|F|27
-TTTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000006_412|759|F|27
+>FBgn0000006_412|759|F|27|n=3
 TTTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000006_412|760|F|26
-TTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000006_412|760|F|26
-TTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000006_412|760|F|26
-TTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000006_412|760|F|26
+>FBgn0000006_412|760|F|26|n=6
 TTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000006_412|760|F|26
-TTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000006_412|760|F|26
-TTGGTCGAAAGCTCTAAAGCTACATG
->FBgn0000007_1731|4539|R|26
-TTGAGAGCAAAGGCCGAATGAGTAAA
->FBgn0000007_1731|4555|F|24
+>FBgn0000006_412|744|R|26|n=2
+TTTCGACCAAACCGGTGGCGTTTGCT
+>FBgn0000006_412|745|R|25|n=1
+TTTCGACCAAACCGGTGGCGTTTGC
+>FBgn0000007_1731|4555|F|24|n=1
 TTGCTCTCAATGCGCTGAGTTTGG
->FBgn0000155_roo|8639|R|26
-TTCTGCCAAAGGGCCAGCAAAGCTGA
->FBgn0000155_roo|8639|R|26
-TTCTGCCAAAGTGCCAGCAAAGCTGA
->FBgn0000155_roo|3225|R|26
-TTTTGCCCAAGGAGACCGTCTATTTT
->FBgn0000155_roo|3226|R|25
-TTTTGCCCAAGGAGACCGTCTATTT
->FBgn0000155_roo|3227|R|24
-TTTTGCCCAAGGAGACCGTCTATT
->FBgn0000155_roo|3227|R|24
-TTTTGCCCAAGGAGACCGTCTATT
->FBgn0000155_roo|3228|R|23
-TTTTGCCCAAGGAGACCGTCTAT
->FBgn0000155_roo|3132|R|27
-TTTATTAAAATCGGGGTCGGCTAATTT
->FBgn0000155_roo|2675|R|27
+>FBgn0000007_1731|4539|R|26|n=1
+TTGAGAGCAAAGGCCGAATGAGTAAA
+>FBgn0000155_roo|2176|F|24|n=1
+TTTTGACCAAGCGGTATGAGAATA
+>FBgn0000155_roo|2159|R|27|n=1
+TTGGTCAAAAACTCCCAAGTGGCTTCA
+>FBgn0000155_roo|2161|R|25|n=1
+TTGGTCAAAAACTCCCAAGTGGCTT
+>FBgn0000155_roo|2692|F|24|n=1
+TTGGTAAAAAATGTATAAGTGAGC
+>FBgn0000155_roo|2675|R|27|n=1
 TTTTTACCAAACGGATGCCTCAGACAT
->FBgn0000155_roo|2676|R|26
-TTTTTACCAAACGGATGCCTCAGACA
->FBgn0000155_roo|2676|R|26
-TTTTTACCAAACGGATGCCTCAGACA
->FBgn0000155_roo|2676|R|26
-TTTTTACCAAACGGATGCCTCAGACA
->FBgn0000155_roo|2676|R|26
-TTTTTACCAAACGGATGCCTCAGACA
->FBgn0000155_roo|2676|R|26
+>FBgn0000155_roo|2676|R|26|n=5
 TTTTTACCAAACGGATGCCTCAGACA
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
+>FBgn0000155_roo|2677|R|25|n=14
 TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2677|R|25
-TTTTTACCAAACGGATGCCTCAGAC
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
+>FBgn0000155_roo|2678|R|24|n=14
 TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2678|R|24
-TTTTTACCAAACGGATGCCTCAGA
->FBgn0000155_roo|2679|R|23
+>FBgn0000155_roo|2679|R|23|n=2
 TTTTTACCAAACGGATGCCTCAG
->FBgn0000155_roo|2679|R|23
-TTTTTACCAAACGGATGCCTCAG
->FBgn0000155_roo|2159|R|27
-TTGGTCAAAAACTCCCAAGTGGCTTCA
->FBgn0000155_roo|2161|R|25
-TTGGTCAAAAACTCCCAAGTGGCTT
->FBgn0000155_roo|2176|F|24
-TTTTGACCAAGCGGTATGAGAATA
->FBgn0000155_roo|2692|F|24
-TTGGTAAAAAATGTATAAGTGAGC
->FBgn0000155_roo|2692|F|27
+>FBgn0000155_roo|2692|F|27|n=1
 TTGGTAAAAAATGTATAAGTGAGCAGC
->FBgn0000155_roo|3149|F|26
+>FBgn0000155_roo|3149|F|26|n=1
 TTTTAATAAACCGGGTCGCATTGATT
->FBgn0000155_roo|3241|F|24
+>FBgn0000155_roo|3132|R|27|n=1
+TTTATTAAAATCGGGGTCGGCTAATTT
+>FBgn0000155_roo|3241|F|24|n=1
 TTGGGCAAAAAACTGATTTCGGGT
->FBgn0000155_roo|3241|F|27
+>FBgn0000155_roo|3225|R|26|n=1
+TTTTGCCCAAGGAGACCGTCTATTTT
+>FBgn0000155_roo|3226|R|25|n=1
+TTTTGCCCAAGGAGACCGTCTATTT
+>FBgn0000155_roo|3227|R|24|n=2
+TTTTGCCCAAGGAGACCGTCTATT
+>FBgn0000155_roo|3228|R|23|n=1
+TTTTGCCCAAGGAGACCGTCTAT
+>FBgn0000155_roo|3241|F|27|n=1
 TTGGGCAAAAAACTGATTTCGGGTGGA
->FBgn0000155_roo|3241|F|28
+>FBgn0000155_roo|3241|F|28|n=1
 TTGGGCAAAAAACTGATTTCGGGTGGAT
->FBgn0000155_roo|8655|F|25
+>FBgn0000155_roo|8655|F|25|n=1
 TTTGGCAGAATGTTCACACATGAAA
->FBgn0000349_copia|4614|R|24
+>FBgn0000155_roo|8639|R|26|n=1
+TTCTGCCAAAGGGCCAGCAAAGCTGA
+>FBgn0000155_roo|8639|R|26|n=1
+TTCTGCCAAAGTGCCAGCAAAGCTGA
+>FBgn0000349_copia|670|F|25|n=1
+TTCTTGAGAATTTGGACGCCGTTTA
+>FBgn0000349_copia|653|R|27|n=1
+TTCTCAAGAATCTGACGCGCCGTAATG
+>FBgn0000349_copia|657|R|23|n=1
+TTCTCAAGAATCTGACGCGCCGT
+>FBgn0000349_copia|4628|F|24|n=1
+TTTGCTGCAAGACGACCAATCGAA
+>FBgn0000349_copia|4614|R|24|n=1
 TTGCAGCAAACCCAATTTGTCTCG
->FBgn0000349_copia|653|R|27
-TTCTCAAGAATCTGACGCGCCGTAATG
->FBgn0000349_copia|657|R|23
-TTCTCAAGAATCTGACGCGCCGT
->FBgn0000349_copia|670|F|25
-TTCTTGAGAATTTGGACGCCGTTTA
->FBgn0000349_copia|4628|F|24
-TTTGCTGCAAGACGACCAATCGAA
->FBgn0000349_copia|4628|F|28
+>FBgn0000349_copia|4628|F|28|n=1
 TTTGCTGCAAGACGACCAATCGAATGCT
->FBgn0000481_Doc|3531|R|27
-TTTCTCTAAAGCCAAATTGATGTGTTG
->FBgn0000481_Doc|3532|R|26
-TTTCTCTAAAGCCAAATTGATGTGTT
->FBgn0000481_Doc|3533|R|25
-TTTCTCTAAAGCCAAATTGATGTGT
->FBgn0000481_Doc|3533|R|25
-TTTCTCTAAAGCCAAATTGATGTGT
->FBgn0000481_Doc|3533|R|25
-TTTCTCTAAAGCCAAATTGATGTGT
->FBgn0000481_Doc|3533|R|25
-TTTCTCTAAAGCCAAATTGATGTGT
->FBgn0000481_Doc|3533|R|25
-TTTCTCTAAAGCCAAATTGATGTGT
->FBgn0000481_Doc|3533|R|25
-TTTCTCTAAAGCCAAATTGATGTGT
->FBgn0000481_Doc|3533|R|25
-TTTCTCTAAAGCCAAATTGATGTGT
->FBgn0000481_Doc|3534|R|24
-TTTCTCTAAAGCCAAATTGATGTG
->FBgn0000481_Doc|3535|R|23
-TTTCTCTAAAGCCAAATTGATGT
->FBgn0000481_Doc|3535|R|23
-TTTCTCTAAAGCCAAATTGATGT
->FBgn0000481_Doc|1812|R|28
-TTTGCATGAACGTCATGAAGTCTTTCAT
->FBgn0000481_Doc|1815|R|25
-TTTGCATGAACGTCATAAAGTCTTT
->FBgn0000481_Doc|1815|R|25
-TTTGCATGAACGTCATGAAGTCTTT
->FBgn0000481_Doc|1816|R|24
-TTTGCATGAAGGTCATGAAGTCTT
->FBgn0000481_Doc|1830|F|25
+>FBgn0000481_Doc|1830|F|25|n=1
 TTCATGCAAAATACTTTGCAAGAGC
->FBgn0000481_Doc|1830|F|26
+>FBgn0000481_Doc|1812|R|28|n=1
+TTTGCATGAACGTCATGAAGTCTTTCAT
+>FBgn0000481_Doc|1815|R|25|n=1
+TTTGCATGAACGTCATAAAGTCTTT
+>FBgn0000481_Doc|1815|R|25|n=1
+TTTGCATGAACGTCATGAAGTCTTT
+>FBgn0000481_Doc|1816|R|24|n=1
+TTTGCATGAAGGTCATGAAGTCTT
+>FBgn0000481_Doc|1830|F|26|n=1
 TTCATGCAAAATACTTTGCAAGAGCT
->FBgn0000481_Doc|3548|F|27
+>FBgn0000481_Doc|3548|F|27|n=1
 TTTAGAGAAAAACATGGAACCATCGAA
->FBgn0000652_F-element|3507|R|27
-TTTCGCGAAATCCAAATTGGTGGGCTG
->FBgn0000652_F-element|3509|R|25
-TTTCGCGAAATCCAAATTGGTGGGC
->FBgn0000652_F-element|3509|R|25
-TTTCGCGAAATCCAAATTGGTGGGC
->FBgn0000652_F-element|3509|R|25
-TTTCGCGAAATCCAAATTGGTGGGC
->FBgn0000652_F-element|3509|R|25
-TTTCGCGAAATCCAAATTGGTGGGC
->FBgn0000652_F-element|3509|R|25
-TTTCGCGAAATCCAAATTGGTGGGC
->FBgn0000652_F-element|3509|R|25
-TTTCGCGAAATCCAAATTGGTGGGC
->FBgn0000652_F-element|3510|R|24
-TTTCGCGAAATCCAAATTGGTGGG
->FBgn0000652_F-element|1546|R|28
+>FBgn0000481_Doc|3531|R|27|n=1
+TTTCTCTAAAGCCAAATTGATGTGTTG
+>FBgn0000481_Doc|3532|R|26|n=1
+TTTCTCTAAAGCCAAATTGATGTGTT
+>FBgn0000481_Doc|3533|R|25|n=7
+TTTCTCTAAAGCCAAATTGATGTGT
+>FBgn0000481_Doc|3534|R|24|n=1
+TTTCTCTAAAGCCAAATTGATGTG
+>FBgn0000481_Doc|3535|R|23|n=2
+TTTCTCTAAAGCCAAATTGATGT
+>FBgn0000652_F-element|1564|F|23|n=2
+TTTTCTCGAAAGCAGCAAGTTTC
+>FBgn0000652_F-element|1546|R|28|n=1
 TTCGAGAAAATTACTTCAGGATTTGTCT
->FBgn0000652_F-element|1546|R|28
+>FBgn0000652_F-element|1546|R|28|n=1
 TTCGGGAAAATTACTTCAGGATTTGTCT
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
+>FBgn0000652_F-element|1547|R|27|n=74
 TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
-TTCGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
+>FBgn0000652_F-element|1547|R|27|n=1
 TTCGGGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1547|R|27
+>FBgn0000652_F-element|1547|R|27|n=1
 TTTGAGAAAATTACTTCAGGATTTGTC
->FBgn0000652_F-element|1548|R|26
-TTCGAGAAAATTACTTCAGGATTTGT
->FBgn0000652_F-element|1548|R|26
-TTCGAGAAAATTACTTCAGGATTTGT
->FBgn0000652_F-element|1548|R|26
+>FBgn0000652_F-element|1548|R|26|n=3
 TTCGAGAAAATTACTTCAGGATTTGT
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
+>FBgn0000652_F-element|1549|R|25|n=22
 TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
-TTCGAGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1549|R|25
+>FBgn0000652_F-element|1549|R|25|n=1
 TTCGGGAAAATTACTTCAGGATTTG
->FBgn0000652_F-element|1550|R|24
-TTCGAGAAAATTACTTCAGGATTT
->FBgn0000652_F-element|1550|R|24
+>FBgn0000652_F-element|1550|R|24|n=2
 TTCGAGAAAATTACTTCAGGATTT
->FBgn0000652_F-element|1551|R|23
-TTCGAGAAAATTACTTCAGGATT
->FBgn0000652_F-element|1551|R|23
-TTCGAGAAAATTACTTCAGGATT
->FBgn0000652_F-element|1551|R|23
+>FBgn0000652_F-element|1551|R|23|n=7
 TTCGAGAAAATTACTTCAGGATT
->FBgn0000652_F-element|1551|R|23
-TTCGAGAAAATTACTTCAGGATT
->FBgn0000652_F-element|1551|R|23
-TTCGAGAAAATTACTTCAGGATT
->FBgn0000652_F-element|1551|R|23
-TTCGAGAAAATTACTTCAGGATT
->FBgn0000652_F-element|1551|R|23
-TTCGAGAAAATTACTTCAGGATT
->FBgn0000652_F-element|1564|F|23
-TTTTCTCGAAAGCAGCAAGTTTC
->FBgn0000652_F-element|1564|F|23
-TTTTCTCGAAAGCAGCAAGTTTC
->FBgn0000652_F-element|1564|F|24
-TTTTCTCGAAAGCAGCAAGTTTCG
->FBgn0000652_F-element|1564|F|24
+>FBgn0000652_F-element|1564|F|24|n=2
 TTTTCTCGAAAGCAGCAAGTTTCG
->FBgn0000652_F-element|1564|F|23
-TTTTCTCGAAAGCAGCTAGTTTC
->FBgn0000652_F-element|1564|F|23
+>FBgn0000652_F-element|1564|F|23|n=2
 TTTTCTCGAAAGCAGCTAGTTTC
->FBgn0000652_F-element|1564|F|24
-TTTTCTCGAAAGCAGCTAGTTTCG
->FBgn0000652_F-element|1564|F|24
+>FBgn0000652_F-element|1564|F|24|n=5
 TTTTCTCGAAAGCAGCTAGTTTCG
->FBgn0000652_F-element|1564|F|24
-TTTTCTCGAAAGCAGCTAGTTTCG
->FBgn0000652_F-element|1564|F|24
-TTTTCTCGAAAGCAGCTAGTTTCG
->FBgn0000652_F-element|1564|F|24
-TTTTCTCGAAAGCAGCTAGTTTCG
->FBgn0000652_F-element|1564|F|25
+>FBgn0000652_F-element|1564|F|25|n=1
 TTTTCTCGAAAGCAGCTAGTTTCGC
->FBgn0000652_F-element|3524|F|23
+>FBgn0000652_F-element|3524|F|23|n=1
 TTTCGCGAAAGCCACGGAACCAT
->FBgn0000652_F-element|3524|F|27
+>FBgn0000652_F-element|3507|R|27|n=1
+TTTCGCGAAATCCAAATTGGTGGGCTG
+>FBgn0000652_F-element|3509|R|25|n=6
+TTTCGCGAAATCCAAATTGGTGGGC
+>FBgn0000652_F-element|3510|R|24|n=1
+TTTCGCGAAATCCAAATTGGTGGG
+>FBgn0000652_F-element|3524|F|27|n=1
 TTTCGCGAAAGCCACGGAACCATTGAA
->FBgn0000652_F-element|3524|F|24
+>FBgn0000652_F-element|3524|F|24|n=1
 TTTCGCGAAAGCCATGGAACCATT
->FBgn0000652_F-element|3524|F|26
+>FBgn0000652_F-element|3524|F|26|n=1
 TTTCGCGAAAGCCATGGAACCATTGA
->FBgn0002697_mdg1|4670|R|26
+>FBgn0002697_mdg1|4313|F|25|n=1
+TTCCAAAGAATGATGACCCTTGCAT
+>FBgn0002697_mdg1|4296|R|27|n=1
+TTCTTTGGAAAGAATTTGGGGCTATTT
+>FBgn0002697_mdg1|4297|R|26|n=2
+TTCTTTGGAAAGAATTTGGGGCTATT
+>FBgn0002697_mdg1|4298|R|25|n=3
+TTCTTTGGAAAGAATTTGGGGCTAT
+>FBgn0002697_mdg1|4299|R|24|n=1
+TTCTTTGGAAAGAATTTGGGGCTA
+>FBgn0002697_mdg1|4686|F|24|n=1
+TTTGTAAAAAGAATGTTCCATTTG
+>FBgn0002697_mdg1|4670|R|26|n=2
 TTTTTACAAAGCCTCGTTAAGTGGCG
->FBgn0002697_mdg1|4671|R|25
-TTTTTACAAAGCCTCGTTAAGTGGC
->FBgn0002697_mdg1|4671|R|25
-TTTTTACAAAGCCTCGTTAAGTGGC
->FBgn0002697_mdg1|4671|R|25
-TTTTTACAAAGCCTCGTTAAGTGGC
->FBgn0002697_mdg1|4671|R|25
+>FBgn0002697_mdg1|4671|R|25|n=4
 TTTTTACAAAGCCTCGTTAAGTGGC
->FBgn0002697_mdg1|4672|R|24
-TTTTTACAAAGCCTCGTTAAGTGG
->FBgn0002697_mdg1|4672|R|24
+>FBgn0002697_mdg1|4672|R|24|n=3
 TTTTTACAAAGCCTCGTTAAGTGG
->FBgn0002697_mdg1|4672|R|24
-TTTTTACAAAGCCTCGTTAAGTGG
->FBgn0002697_mdg1|4673|R|23
+>FBgn0002697_mdg1|4673|R|23|n=1
 TTTTTACAAAGCCTCGTTAAATG
->FBgn0002697_mdg1|4673|R|23
-TTTTTACAAAGCCTCGTTAAGTG
->FBgn0002697_mdg1|4673|R|23
-TTTTTACAAAGCCTCGTTAAGTG
->FBgn0002697_mdg1|4673|R|23
-TTTTTACAAAGCCTCGTTAAGTG
->FBgn0002697_mdg1|4673|R|23
-TTTTTACAAAGCCTCGTTAAGTG
->FBgn0002697_mdg1|4673|R|23
+>FBgn0002697_mdg1|4673|R|23|n=6
 TTTTTACAAAGCCTCGTTAAGTG
->FBgn0002697_mdg1|4673|R|23
-TTTTTACAAAGCCTCGTTAAGTG
->FBgn0002697_mdg1|4296|R|27
-TTCTTTGGAAAGAATTTGGGGCTATTT
->FBgn0002697_mdg1|4297|R|26
-TTCTTTGGAAAGAATTTGGGGCTATT
->FBgn0002697_mdg1|4297|R|26
-TTCTTTGGAAAGAATTTGGGGCTATT
->FBgn0002697_mdg1|4298|R|25
-TTCTTTGGAAAGAATTTGGGGCTAT
->FBgn0002697_mdg1|4298|R|25
-TTCTTTGGAAAGAATTTGGGGCTAT
->FBgn0002697_mdg1|4298|R|25
-TTCTTTGGAAAGAATTTGGGGCTAT
->FBgn0002697_mdg1|4299|R|24
-TTCTTTGGAAAGAATTTGGGGCTA
->FBgn0002697_mdg1|4313|F|25
-TTCCAAAGAATGATGACCCTTGCAT
->FBgn0002697_mdg1|4686|F|24
-TTTGTAAAAAGAATGTTCCATTTG
->FBgn0003122_pogo|1804|R|25
-TTCCATAGAATTCAAGTTTTGCAAA
->FBgn0003122_pogo|1806|R|23
-TTCCATAGAATTCAAGTTTTGCA
->FBgn0003122_pogo|1305|R|25
+>FBgn0003122_pogo|1320|F|25|n=1
+TTGTGGTAAATCTACTGTGGAATTT
+>FBgn0003122_pogo|1305|R|25|n=1
 TTTACCACAATTAACAGCAATGAGC
->FBgn0003122_pogo|1320|F|25
-TTGTGGTAAATCTACTGTGGAATTT
->FBgn0003122_pogo|1819|F|26
-TTCTATGGAAGACAAGCTGTTTAATT
->FBgn0003122_pogo|1819|F|26
-TTCTATGGAAGACAAGCTGTTTAATT
->FBgn0003122_pogo|1819|F|26
+>FBgn0003122_pogo|1819|F|26|n=3
 TTCTATGGAAGACAAGCTGTTTAATT
->FBgn0003490_springer|6910|R|29
-TTTGCTCCAAGTTCTTTTCACTTAAACGG
->FBgn0003490_springer|6910|R|29
-TTTGCTCCAAGTTCTTTTCACTTAAACGG
->FBgn0003490_springer|5267|R|27
-TTCTTGTCAAAATCTGGGCGTTTTTGA
->FBgn0003490_springer|5267|R|27
-TTCTTGTCAAAATCTGGGCGTTTTTGA
->FBgn0003490_springer|5267|R|27
-TTCTTGTCAAAATCTGGGCGTTTTTGA
->FBgn0003490_springer|5267|R|27
-TTCTTGTCAAAATCTGGGCGTTTTTGA
->FBgn0003490_springer|5267|R|27
-TTCTTGTCAAAATCTGGGCGTTTTTGA
->FBgn0003490_springer|5267|R|27
-TTCTTGTCAAAATCTGGGCGTTTTTGA
->FBgn0003490_springer|5267|R|27
-TTCTTGTCAAAATCTGGGCGTTTTTGA
->FBgn0003490_springer|5269|R|25
-TTCTTGTCAAAATCTGGGCGTTTTT
->FBgn0003490_springer|5271|R|23
-TTCTTGTCAAAATCTGGGCGTTT
->FBgn0003490_springer|5271|R|23
-TTCTTGTCAAAATCTGGGCGTTT
->FBgn0003490_springer|4195|R|23
+>FBgn0003122_pogo|1804|R|25|n=1
+TTCCATAGAATTCAAGTTTTGCAAA
+>FBgn0003122_pogo|1806|R|23|n=1
+TTCCATAGAATTCAAGTTTTGCA
+>FBgn0003490_springer|1390|F|24|n=1
+TTGTGGGGAAACATTGGATGCCGT
+>FBgn0003490_springer|1376|R|24|n=1
+TTCCCCACAAGGGACCAGTCCGGT
+>FBgn0003490_springer|4208|F|26|n=1
+TTGTTGAAGAGCAAGAACCGGAGTCG
+>FBgn0003490_springer|4195|R|23|n=1
 TTTTCAACAACGTTGAGTTGTTG
->FBgn0003490_springer|1376|R|24
-TTCCCCACAAGGGACCAGTCCGGT
->FBgn0003490_springer|1390|F|24
-TTGTGGGGAAACATTGGATGCCGT
->FBgn0003490_springer|4208|F|26
-TTGTTGAAGAGCAAGAACCGGAGTCG
->FBgn0003490_springer|5284|F|24
+>FBgn0003490_springer|5284|F|24|n=6
 TTGACAAGAAAACGAGAGAACGCT
->FBgn0003490_springer|5284|F|24
-TTGACAAGAAAACGAGAGAACGCT
->FBgn0003490_springer|5284|F|24
-TTGACAAGAAAACGAGAGAACGCT
->FBgn0003490_springer|5284|F|24
-TTGACAAGAAAACGAGAGAACGCT
->FBgn0003490_springer|5284|F|24
-TTGACAAGAAAACGAGAGAACGCT
->FBgn0003490_springer|5284|F|24
-TTGACAAGAAAACGAGAGAACGCT
->FBgn0003490_springer|5284|F|26
+>FBgn0003490_springer|5267|R|27|n=7
+TTCTTGTCAAAATCTGGGCGTTTTTGA
+>FBgn0003490_springer|5269|R|25|n=1
+TTCTTGTCAAAATCTGGGCGTTTTT
+>FBgn0003490_springer|5271|R|23|n=2
+TTCTTGTCAAAATCTGGGCGTTT
+>FBgn0003490_springer|5284|F|26|n=1
 TTGACAAGAAAACGAGAGAACGCTTC
->FBgn0003490_springer|6929|F|23
-TTGGAGCAAATCAGGAACTTCGA
->FBgn0003490_springer|6929|F|23
+>FBgn0003490_springer|6929|F|23|n=2
 TTGGAGCAAATCAGGAACTTCGA
->FBgn0003490_springer|6929|F|26
-TTGGAGCAAATCAGGAACTTCGAGAA
->FBgn0003908_R1A1-element|4671|R|29
+>FBgn0003490_springer|6910|R|29|n=2
+TTTGCTCCAAGTTCTTTTCACTTAAACGG
+>FBgn0003908_R1A1-element|4690|F|23|n=8
+TTGGCGAAAACTGGATCTTCGAG
+>FBgn0003908_R1A1-element|4671|R|29|n=1
 TTTTCGCCAAGGCGCTGCACTCCAAGTCC
->FBgn0003908_R1A1-element|4672|R|28
-TTTTCGCCAAGGCGCTGCACTCCAAGTC
->FBgn0003908_R1A1-element|4672|R|28
-TTTTCGCCAAGGCGCTGCACTCCAAGTC
->FBgn0003908_R1A1-element|4672|R|28
-TTTTCGCCAAGGCGCTGCACTCCAAGTC
->FBgn0003908_R1A1-element|4672|R|28
-TTTTCGCCAAGGCGCTGCACTCCAAGTC
->FBgn0003908_R1A1-element|4672|R|28
-TTTTCGCCAAGGCGCTGCACTCCAAGTC
->FBgn0003908_R1A1-element|4672|R|28
-TTTTCGCCAAGGCGCTGCACTCCAAGTC
->FBgn0003908_R1A1-element|4672|R|28
+>FBgn0003908_R1A1-element|4672|R|28|n=8
 TTTTCGCCAAGGCGCTGCACTCCAAGTC
->FBgn0003908_R1A1-element|4672|R|28
-TTTTCGCCAAGGCGCTGCACTCCAAGTC
->FBgn0003908_R1A1-element|4673|R|27
+>FBgn0003908_R1A1-element|4673|R|27|n=1
 TTTTCGCCAAGGCGCTGCACCCCAAGT
->FBgn0003908_R1A1-element|4673|R|27
+>FBgn0003908_R1A1-element|4673|R|27|n=4
 TTTTCGCCAAGGCGCTGCACTCCAAGT
->FBgn0003908_R1A1-element|4673|R|27
-TTTTCGCCAAGGCGCTGCACTCCAAGT
->FBgn0003908_R1A1-element|4673|R|27
-TTTTCGCCAAGGCGCTGCACTCCAAGT
->FBgn0003908_R1A1-element|4673|R|27
-TTTTCGCCAAGGCGCTGCACTCCAAGT
->FBgn0003908_R1A1-element|4674|R|26
+>FBgn0003908_R1A1-element|4674|R|26|n=1
 TTTTCGCCAAGGCGCTGCACCCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
+>FBgn0003908_R1A1-element|4674|R|26|n=29
 TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4674|R|26
-TTTTCGCCAAGGCGCTGCACTTCAAG
->FBgn0003908_R1A1-element|4674|R|26
+>FBgn0003908_R1A1-element|4674|R|26|n=2
 TTTTCGCCAAGGCGCTGCACTTCAAG
->FBgn0003908_R1A1-element|4674|R|26
+>FBgn0003908_R1A1-element|4674|R|26|n=1
 TTTTCGTCAAGGCGCTGCACTCCAAG
->FBgn0003908_R1A1-element|4675|R|25
+>FBgn0003908_R1A1-element|4675|R|25|n=1
 TTTTCGCCAAGGCGCTGCACCCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
+>FBgn0003908_R1A1-element|4675|R|25|n=10
 TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
-TTTTCGCCAAGGCGCTGCACTCCAA
->FBgn0003908_R1A1-element|4675|R|25
+>FBgn0003908_R1A1-element|4675|R|25|n=1
 TTTTCGCCAAGGCGCTGCACTTCAA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
+>FBgn0003908_R1A1-element|4676|R|24|n=21
 TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTCCA
->FBgn0003908_R1A1-element|4676|R|24
-TTTTCGCCAAGGCGCTGCACTTCA
->FBgn0003908_R1A1-element|4676|R|24
+>FBgn0003908_R1A1-element|4676|R|24|n=2
 TTTTCGCCAAGGCGCTGCACTTCA
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
+>FBgn0003908_R1A1-element|4677|R|23|n=12
 TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4677|R|23
-TTTTCGCCAAGGCGCTGCACTCC
->FBgn0003908_R1A1-element|4690|F|23
-TTGGCGAAAACTGGATCTTCGAG
->FBgn0003908_R1A1-element|4690|F|23
-TTGGCGAAAACTGGATCTTCGAG
->FBgn0003908_R1A1-element|4690|F|23
-TTGGCGAAAACTGGATCTTCGAG
->FBgn0003908_R1A1-element|4690|F|23
-TTGGCGAAAACTGGATCTTCGAG
->FBgn0003908_R1A1-element|4690|F|23
-TTGGCGAAAACTGGATCTTCGAG
->FBgn0003908_R1A1-element|4690|F|23
-TTGGCGAAAACTGGATCTTCGAG
->FBgn0003908_R1A1-element|4690|F|23
-TTGGCGAAAACTGGATCTTCGAG
->FBgn0003908_R1A1-element|4690|F|23
-TTGGCGAAAACTGGATCTTCGAG
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|24
+>FBgn0003908_R1A1-element|4690|F|24|n=9
 TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGA
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
+>FBgn0003908_R1A1-element|4690|F|25|n=11
 TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGAG
->FBgn0003908_R1A1-element|4690|F|26
-TTGGCGAAAACTGGATCTTCGAGAGA
->FBgn0003908_R1A1-element|4690|F|26
-TTGGCGAAAACTGGATCTTCGAGAGA
->FBgn0003908_R1A1-element|4690|F|26
-TTGGCGAAAACTGGATCTTCGAGAGA
->FBgn0003908_R1A1-element|4690|F|26
-TTGGCGAAAACTGGATCTTCGAGAGA
->FBgn0003908_R1A1-element|4690|F|26
-TTGGCGAAAACTGGATCTTCGAGAGA
->FBgn0003908_R1A1-element|4690|F|26
+>FBgn0003908_R1A1-element|4690|F|26|n=6
 TTGGCGAAAACTGGATCTTCGAGAGA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|28
-TTGGCGAAAACTGGATCTTCGAGAGAAT
->FBgn0003908_R1A1-element|4690|F|28
-TTGGCGAAAACTGGATCTTCGAGAGAAT
->FBgn0003908_R1A1-element|4690|F|28
-TTGGCGAAAACTGGATCTTCGAGAGAAT
->FBgn0003908_R1A1-element|4690|F|28
-TTGGCGAAAACTGGATCTTCGAGAGAAT
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGG
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGG
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGG
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGG
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGG
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGG
->FBgn0003908_R1A1-element|4690|F|24
-TTGGCGAAAACTGGATCTTCGAGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|25
-TTGGCGAAAACTGGATCTTCGAGGG
->FBgn0003908_R1A1-element|4690|F|26
-TTGGCGAAAACTGGATCTTCGAGGGA
->FBgn0003908_R1A1-element|4690|F|26
-TTGGCGAAAACTGGATCTTCGAGGGA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|28
-TTGGCGAAAACTGGATCTTCGAGGGAAT
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGGGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
+>FBgn0003908_R1A1-element|4690|F|27|n=20
 TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0003908_R1A1-element|4690|F|27
-TTGGCGAAAACTGGATCTTCGAGAGAA
->FBgn0004082_Tirant|4197|R|27
-TTCTAATGAACTCGTAGTGGCCCCCCT
->FBgn0004082_Tirant|4214|F|25
+>FBgn0003908_R1A1-element|4690|F|28|n=4
+TTGGCGAAAACTGGATCTTCGAGAGAAT
+>FBgn0003908_R1A1-element|4690|F|24|n=7
+TTGGCGAAAACTGGATCTTCGAGG
+>FBgn0003908_R1A1-element|4690|F|25|n=12
+TTGGCGAAAACTGGATCTTCGAGGG
+>FBgn0003908_R1A1-element|4690|F|26|n=2
+TTGGCGAAAACTGGATCTTCGAGGGA
+>FBgn0003908_R1A1-element|4690|F|27|n=9
+TTGGCGAAAACTGGATCTTCGAGGGAA
+>FBgn0003908_R1A1-element|4690|F|28|n=1
+TTGGCGAAAACTGGATCTTCGAGGGAAT
+>FBgn0004082_Tirant|4214|F|25|n=1
 TTCATTAGAATGCCGTTTGGCCTCA
->FBgn0005384_3S18|5237|R|28
-TTTGATCCAAGTATTCGTTTCATATGGA
->FBgn0005384_3S18|5241|R|24
-TTTGATCCAAGTATCCGTTTCATA
->FBgn0005384_3S18|5241|R|24
-TTTGATCCAAGTATCCGTTTCATA
->FBgn0005384_3S18|5241|R|24
-TTTGATCCAAGTATTCGTTTCATA
->FBgn0005384_3S18|4741|R|27
+>FBgn0004082_Tirant|4197|R|27|n=1
+TTCTAATGAACTCGTAGTGGCCCCCCT
+>FBgn0005384_3S18|4758|F|23|n=1
+TTTTCTTCAACGAAAGGGCACAA
+>FBgn0005384_3S18|4741|R|27|n=2
 TTGAAGAAAACAGGATTTGCATTGGAA
->FBgn0005384_3S18|4741|R|27
-TTGAAGAAAACAGGATTTGCATTGGAA
->FBgn0005384_3S18|4742|R|26
+>FBgn0005384_3S18|4742|R|26|n=2
 TTGAAGAAAACAGGATTTGCATTGGA
->FBgn0005384_3S18|4742|R|26
-TTGAAGAAAACAGGATTTGCATTGGA
->FBgn0005384_3S18|4743|R|25
-TTGAAGAAAACAGGATTTGCATTGG
->FBgn0005384_3S18|4743|R|25
+>FBgn0005384_3S18|4743|R|25|n=4
 TTGAAGAAAACAGGATTTGCATTGG
->FBgn0005384_3S18|4743|R|25
-TTGAAGAAAACAGGATTTGCATTGG
->FBgn0005384_3S18|4743|R|25
-TTGAAGAAAACAGGATTTGCATTGG
->FBgn0005384_3S18|4744|R|24
+>FBgn0005384_3S18|4744|R|24|n=1
 TTGAAGAAAACAGGATTTGCATTG
->FBgn0005384_3S18|4745|R|23
+>FBgn0005384_3S18|4745|R|23|n=2
 TTGAAGAAAACAGGATTTGCATT
->FBgn0005384_3S18|4745|R|23
-TTGAAGAAAACAGGATTTGCATT
->FBgn0005384_3S18|4758|F|23
-TTTTCTTCAACGAAAGGGCACAA
->FBgn0005384_3S18|4758|F|28
+>FBgn0005384_3S18|4758|F|28|n=1
 TTTTCTTCAACGAAAGGGCACAAGCAAC
->FBgn0005384_3S18|5255|F|25
+>FBgn0005384_3S18|5255|F|25|n=1
 TTGGATCAAAGGCTTTAACGTTTGA
->FBgn0005384_3S18|5255|F|28
-TTGGATCAAAGGCTTTAACGTTTGAGGA
->FBgn0005384_3S18|5255|F|28
-TTGGATCAAAGGCTTTAACGTTTGAGGA
->FBgn0005384_3S18|5255|F|28
-TTGGATCAAAGGCTTTAACGTTTGAGGA
->FBgn0005384_3S18|5255|F|28
+>FBgn0005384_3S18|5237|R|28|n=1
+TTTGATCCAAGTATTCGTTTCATATGGA
+>FBgn0005384_3S18|5241|R|24|n=2
+TTTGATCCAAGTATCCGTTTCATA
+>FBgn0005384_3S18|5241|R|24|n=1
+TTTGATCCAAGTATTCGTTTCATA
+>FBgn0005384_3S18|5255|F|28|n=4
 TTGGATCAAAGGCTTTAACGTTTGAGGA
->FBgn0005673_1360|3195|R|24
-TTTGCTAGAAGACGATTTTCGGGC
->FBgn0005673_1360|2165|R|23
-TTTTGGAAAATGATACAGAGTAT
->FBgn0005673_1360|2165|R|23
-TTTTGGAAAATGATACAGAGTAT
->FBgn0005673_1360|2038|R|28
+>FBgn0005673_1360|2056|F|24|n=1
+TTTTCACAAAAGTCGAATTGCGAG
+>FBgn0005673_1360|2038|R|28|n=1
 TTTGTGAAAATTTAAAAATGTGTAGAGA
->FBgn0005673_1360|2042|R|24
+>FBgn0005673_1360|2042|R|24|n=3
 TTTGTGAAAATTTAAAAATGTGTA
->FBgn0005673_1360|2042|R|24
-TTTGTGAAAATTTAAAAATGTGTA
->FBgn0005673_1360|2042|R|24
-TTTGTGAAAATTTAAAAATGTGTA
->FBgn0005673_1360|2056|F|24
-TTTTCACAAAAGTCGAATTGCGAG
->FBgn0005673_1360|2178|F|24
+>FBgn0005673_1360|2178|F|24|n=1
 TTTTCCAAATTCGTGCAAGACAAT
->FBgn0005673_1360|3209|F|23
+>FBgn0005673_1360|2165|R|23|n=2
+TTTTGGAAAATGATACAGAGTAT
+>FBgn0005673_1360|3209|F|23|n=1
 TTCTAGCACAACACGCACACATA
->FBgn0005673_1360|3209|F|26
+>FBgn0005673_1360|3195|R|24|n=1
+TTTGCTAGAAGACGATTTTCGGGC
+>FBgn0005673_1360|3209|F|26|n=1
 TTCTAGCACAACACGCACACATATAC
->FBgn0005673_1360|3209|F|27
+>FBgn0005673_1360|3209|F|27|n=1
 TTCTAGCACAACACGCACACATATACG
->FBgn0005773_Bari1|1617|R|24
+>FBgn0005773_Bari1|1631|F|24|n=1
+TTTCAGGCAAATCGGACAACAACA
+>FBgn0005773_Bari1|1617|R|24|n=1
 TTGCCTGAAATAGTTCTTATCGCT
->FBgn0005773_Bari1|1631|F|24
-TTTCAGGCAAATCGGACAACAACA
->FBgn0010103_aurora-element|1431|R|23
-TTGCTGGGAACGGCTGGCTGCCG
->FBgn0010103_aurora-element|1444|F|27
+>FBgn0010103_aurora-element|1444|F|27|n=1
 TTCCCAGCAACAGTCTGGAGAGAGGAG
->FBgn0010302_Burdock|3385|R|26
-TTTCATCGAAAGAAATTGGTATCTTT
->FBgn0010302_Burdock|3125|R|26
+>FBgn0010103_aurora-element|1431|R|23|n=1
+TTGCTGGGAACGGCTGGCTGCCG
+>FBgn0010302_Burdock|3141|F|23|n=1
+TTTTCTTCAAGGAAAGCGTCGAG
+>FBgn0010302_Burdock|3125|R|26|n=1
 TTGAAGAAAAACGATTTCTCTTTAGA
->FBgn0010302_Burdock|3127|R|24
+>FBgn0010302_Burdock|3127|R|24|n=1
 TTGAAGAAAAACGATTTCTCTTTA
->FBgn0010302_Burdock|3141|F|23
-TTTTCTTCAAGGAAAGCGTCGAG
->FBgn0010302_Burdock|3141|F|24
+>FBgn0010302_Burdock|3141|F|24|n=1
 TTTTCTTCAAGGAAAGCGTCGAGT
->FBgn0010302_Burdock|3401|F|25
+>FBgn0010302_Burdock|3401|F|25|n=2
 TTCGATGAAAGACAATGTTCTGCTT
->FBgn0010302_Burdock|3401|F|25
-TTCGATGAAAGACAATGTTCTGCTT
->FBgn0014947_flea|2749|R|26
-TTTAGACCAAATTCTGCAGCTCTCTT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2750|R|25
-TTTAGACCAAATTCTGCAGCTCTCT
->FBgn0014947_flea|2751|R|24
-TTTAGACCAAATTCTGCAGCTCTC
->FBgn0014947_flea|2752|R|23
-TTTAGACCAAATTCTGCAGCTCT
->FBgn0014947_flea|2752|R|23
-TTTAGACCAAATTCTGCAGCTCT
->FBgn0014947_flea|1164|R|28
+>FBgn0010302_Burdock|3385|R|26|n=1
+TTTCATCGAAAGAAATTGGTATCTTT
+>FBgn0014947_flea|818|F|23|n=1
+TTCTAGAGAACGAAAGCGAGGAC
+>FBgn0014947_flea|801|R|27|n=4
+TTCTCTAGAATTGCTTGTATTTGGTCG
+>FBgn0014947_flea|802|R|26|n=11
+TTCTCTAGAATTGCTTGTATTTGGTC
+>FBgn0014947_flea|803|R|25|n=12
+TTCTCTAGAATTGCTTGTATTTGGT
+>FBgn0014947_flea|804|R|24|n=2
+TTCTCTAGAATTGCTTGTATTTGG
+>FBgn0014947_flea|805|R|23|n=1
+TTCTCTAGAATTGCTTGTATTTG
+>FBgn0014947_flea|1182|F|23|n=1
+TTTCTTAGAATCTGAATGTGTCA
+>FBgn0014947_flea|1164|R|28|n=2
 TTCTAAGAAAAGTTCTGCTGATCCAATC
->FBgn0014947_flea|1164|R|28
-TTCTAAGAAAAGTTCTGCTGATCCAATC
->FBgn0014947_flea|1166|R|26
-TTCTAAGAAAAGTTCTGCTGATCCAA
->FBgn0014947_flea|1166|R|26
+>FBgn0014947_flea|1166|R|26|n=2
 TTCTAAGAAAAGTTCTGCTGATCCAA
->FBgn0014947_flea|1167|R|25
+>FBgn0014947_flea|1167|R|25|n=1
 TTCTAAGAAAAGTTCTGCTGATCCA
->FBgn0014947_flea|1168|R|24
+>FBgn0014947_flea|1168|R|24|n=1
 TTCTAAGAAAAGTTCTGCTGATCC
->FBgn0014947_flea|1169|R|23
+>FBgn0014947_flea|1169|R|23|n=1
 TTCTAAGAAAAGTTCTGCTGATC
->FBgn0014947_flea|801|R|27
-TTCTCTAGAATTGCTTGTATTTGGTCG
->FBgn0014947_flea|801|R|27
-TTCTCTAGAATTGCTTGTATTTGGTCG
->FBgn0014947_flea|801|R|27
-TTCTCTAGAATTGCTTGTATTTGGTCG
->FBgn0014947_flea|801|R|27
-TTCTCTAGAATTGCTTGTATTTGGTCG
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|802|R|26
-TTCTCTAGAATTGCTTGTATTTGGTC
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|803|R|25
-TTCTCTAGAATTGCTTGTATTTGGT
->FBgn0014947_flea|804|R|24
-TTCTCTAGAATTGCTTGTATTTGG
->FBgn0014947_flea|804|R|24
-TTCTCTAGAATTGCTTGTATTTGG
->FBgn0014947_flea|805|R|23
-TTCTCTAGAATTGCTTGTATTTG
->FBgn0014947_flea|818|F|23
-TTCTAGAGAACGAAAGCGAGGAC
->FBgn0014947_flea|1182|F|23
-TTTCTTAGAATCTGAATGTGTCA
->FBgn0014947_flea|1182|F|25
+>FBgn0014947_flea|1182|F|25|n=2
 TTTCTTAGAATCTGAATGTGTCAGT
->FBgn0014947_flea|1182|F|25
-TTTCTTAGAATCTGAATGTGTCAGT
->FBgn0014947_flea|2765|F|24
-TTGGTCTAAAAATAAAATGGAAGA
->FBgn0014947_flea|2765|F|24
+>FBgn0014947_flea|2765|F|24|n=4
 TTGGTCTAAAAATAAAATGGAAGA
->FBgn0014947_flea|2765|F|24
-TTGGTCTAAAAATAAAATGGAAGA
->FBgn0014947_flea|2765|F|24
-TTGGTCTAAAAATAAAATGGAAGA
->FBgn0014947_flea|2765|F|25
+>FBgn0014947_flea|2749|R|26|n=1
+TTTAGACCAAATTCTGCAGCTCTCTT
+>FBgn0014947_flea|2750|R|25|n=9
+TTTAGACCAAATTCTGCAGCTCTCT
+>FBgn0014947_flea|2751|R|24|n=1
+TTTAGACCAAATTCTGCAGCTCTC
+>FBgn0014947_flea|2752|R|23|n=2
+TTTAGACCAAATTCTGCAGCTCT
+>FBgn0014947_flea|2765|F|25|n=1
 TTGGTCTAAAAATAAAATGGAAGAA
->FBgn0014947_flea|2765|F|26
+>FBgn0014947_flea|2765|F|26|n=1
 TTGGTCTAAAAATAAAATGGAAGAAG
->FBgn0014947_flea|2765|F|28
+>FBgn0014947_flea|2765|F|28|n=1
 TTGGTCTAAAAATAAAATGGAAGAAGTG
->FBgn0015786_Porto1|4472|R|27
-TTTGTCTCAAGTTTGAGTTTTGGTGGC
->FBgn0015786_Porto1|4473|R|26
-TTTGTCTCAAGTTTGAGTTTTGGTGG
->FBgn0015786_Porto1|1003|R|25
+>FBgn0015786_Porto1|1018|F|23|n=1
+TTGGAAGAAACACGATATGAACT
+>FBgn0015786_Porto1|1003|R|25|n=1
 TTTCTTCCAATGAATTTAAAGCAGT
->FBgn0015786_Porto1|1018|F|23
-TTGGAAGAAACACGATATGAACT
->FBgn0015786_Porto1|4489|F|25
+>FBgn0015786_Porto1|4489|F|25|n=1
 TTGAGACAAATACCGATGACAGAGT
->FBgn0015945_GATE|6230|R|26
-TTGAAGGAAATCGCGGGAAAGCAGGG
->FBgn0015945_GATE|6231|R|25
-TTGAAGGAAATCGAGGGAAAGCAGG
->FBgn0015945_GATE|6232|R|24
-TTGAAGGAAATCGCGGGAAAGCAG
->FBgn0015945_GATE|6232|R|24
-TTGAAGGAAATCGCGGGAAAGCAG
->FBgn0015945_GATE|3140|R|28
-TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3140|R|28
-TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3140|R|28
-TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3140|R|28
-TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3140|R|28
+>FBgn0015786_Porto1|4472|R|27|n=1
+TTTGTCTCAAGTTTGAGTTTTGGTGGC
+>FBgn0015786_Porto1|4473|R|26|n=1
+TTTGTCTCAAGTTTGAGTTTTGGTGG
+>FBgn0015945_GATE|3158|F|23|n=18
+TTCGTTCCAAATGAGCAAGCCGG
+>FBgn0015945_GATE|3140|R|28|n=9
 TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3140|R|28
-TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3140|R|28
-TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3140|R|28
-TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3140|R|28
-TTGGAACGAAATTGGCCTGATTAGCGGA
->FBgn0015945_GATE|3141|R|27
+>FBgn0015945_GATE|3141|R|27|n=4
 TTGGAACGAAATTGGCCTGATTAGCGG
->FBgn0015945_GATE|3141|R|27
-TTGGAACGAAATTGGCCTGATTAGCGG
->FBgn0015945_GATE|3141|R|27
-TTGGAACGAAATTGGCCTGATTAGCGG
->FBgn0015945_GATE|3141|R|27
-TTGGAACGAAATTGGCCTGATTAGCGG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
+>FBgn0015945_GATE|3142|R|26|n=17
 TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3142|R|26
-TTGGAACGAAATTGGCCTGATTAGCG
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
+>FBgn0015945_GATE|3143|R|25|n=86
 TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3143|R|25
-TTGGAACGAAATTGGCCTGATTAGC
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
-TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3144|R|24
+>FBgn0015945_GATE|3144|R|24|n=17
 TTGGAACGAAATTGGCCTGATTAG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|23
-TTCGTTCCAAATGAGCAAGCCGG
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
+>FBgn0015945_GATE|3158|F|24|n=10
 TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|24
-TTCGTTCCAAATGAGCAAGCCGGT
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
+>FBgn0015945_GATE|3158|F|25|n=10
 TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|25
-TTCGTTCCAAATGAGCAAGCCGGTG
->FBgn0015945_GATE|3158|F|26
-TTCGTTCCAAATGAGCAAGCCGGTGT
->FBgn0015945_GATE|3158|F|26
-TTCGTTCCAAATGAGCAAGCCGGTGT
->FBgn0015945_GATE|3158|F|26
-TTCGTTCCAAATGAGCAAGCCGGTGT
->FBgn0015945_GATE|3158|F|26
-TTCGTTCCAAATGAGCAAGCCGGTGT
->FBgn0015945_GATE|3158|F|26
+>FBgn0015945_GATE|3158|F|26|n=5
 TTCGTTCCAAATGAGCAAGCCGGTGT
->FBgn0015945_GATE|3158|F|27
+>FBgn0015945_GATE|3158|F|27|n=1
 TTCGTTCCAAATGAGCAAGCCGGTGTT
->FBgn0015945_GATE|6246|F|25
+>FBgn0015945_GATE|6246|F|25|n=1
 TTTCCTTCAAGCCGTAAAAGAGTCG
->FBgn0015945_GATE|6246|F|26
+>FBgn0015945_GATE|6230|R|26|n=1
+TTGAAGGAAATCGCGGGAAAGCAGGG
+>FBgn0015945_GATE|6231|R|25|n=1
+TTGAAGGAAATCGAGGGAAAGCAGG
+>FBgn0015945_GATE|6232|R|24|n=2
+TTGAAGGAAATCGCGGGAAAGCAG
+>FBgn0015945_GATE|6246|F|26|n=1
 TTTCCTTCAAGCCGTAAAAGAGTCGG
->FBgn0022937_Circe|5416|R|25
-TTCTTTGAAATTCGTCAGTTCTTGA
->FBgn0022937_Circe|5418|R|23
-TTCTTTGAAATTCGTCAGTTCTT
->FBgn0022937_Circe|3676|R|25
-TTCGGACAAATGCAAAAGATGGTCT
->FBgn0022937_Circe|2068|R|28
+>FBgn0022937_Circe|2086|F|25|n=2
+TTCTTTCGAAGCACCCGGACAAAGC
+>FBgn0022937_Circe|2068|R|28|n=1
 TTCGAAAGAAATCTTCGTGACGATGACA
->FBgn0022937_Circe|2069|R|27
+>FBgn0022937_Circe|2069|R|27|n=1
 TTCGAAAGAAATCTTCGTGACGATGAC
->FBgn0022937_Circe|2070|R|26
+>FBgn0022937_Circe|2070|R|26|n=1
 TTCGAAAGAAATCTTCGTGACGATGA
->FBgn0022937_Circe|2071|R|25
-TTCGAAAGAAATCTTCGTGACGATG
->FBgn0022937_Circe|2071|R|25
+>FBgn0022937_Circe|2071|R|25|n=5
 TTCGAAAGAAATCTTCGTGACGATG
->FBgn0022937_Circe|2071|R|25
-TTCGAAAGAAATCTTCGTGACGATG
->FBgn0022937_Circe|2071|R|25
-TTCGAAAGAAATCTTCGTGACGATG
->FBgn0022937_Circe|2071|R|25
-TTCGAAAGAAATCTTCGTGACGATG
->FBgn0022937_Circe|2086|F|25
-TTCTTTCGAAGCACCCGGACAAAGC
->FBgn0022937_Circe|2086|F|25
-TTCTTTCGAAGCACCCGGACAAAGC
->FBgn0022937_Circe|2086|F|26
+>FBgn0022937_Circe|2086|F|26|n=1
 TTCTTTCGAAGCACCCGGACAAAGCC
->FBgn0022937_Circe|2086|F|28
+>FBgn0022937_Circe|2086|F|28|n=1
 TTCTTTCGAAGCACCCGGACAAAGCCAA
->FBgn0022937_Circe|3691|F|26
+>FBgn0022937_Circe|3691|F|26|n=1
 TTTGTCCGAAGTAGCCACCCAATTGC
->FBgn0022937_Circe|5431|F|24
+>FBgn0022937_Circe|3676|R|25|n=1
+TTCGGACAAATGCAAAAGATGGTCT
+>FBgn0022937_Circe|5431|F|24|n=2
 TTTCAAAGAATTCGCTCCAACAGT
->FBgn0022937_Circe|5431|F|24
-TTTCAAAGAATTCGCTCCAACAGT
->FBgn0022937_Circe|5431|F|25
+>FBgn0022937_Circe|5416|R|25|n=1
+TTCTTTGAAATTCGTCAGTTCTTGA
+>FBgn0022937_Circe|5418|R|23|n=1
+TTCTTTGAAATTCGTCAGTTCTT
+>FBgn0022937_Circe|5431|F|25|n=1
 TTTCAAAGAATTCGCTCCAACAGTG
->FBgn0022937_Circe|5431|F|25
+>FBgn0022937_Circe|5431|F|25|n=1
 TTTCAAAGAATTCGCTCCAACATTG
->FBgn0042231_X-element|3939|R|26
-TTGATGCCAATATTCCAACGTCTTGC
->FBgn0042231_X-element|3939|R|26
-TTGATGCCAATATTCCAACGTCTTGC
->FBgn0042231_X-element|269|R|26
-TTCTAGCCAAAACTTGAACCCTGGGA
->FBgn0042231_X-element|269|R|26
+>FBgn0042231_X-element|285|F|25|n=1
+TTGGCTAGAACCCTGGTGATTTGGT
+>FBgn0042231_X-element|269|R|26|n=2
 TTCTAGCCAAAACTTGAACCCTGGGA
->FBgn0042231_X-element|285|F|25
-TTGGCTAGAACCCTGGTGATTTGGT
->FBgn0042231_X-element|3955|F|24
-TTGGCATCAATAGCAGTAAATCCA
->FBgn0042231_X-element|3955|F|24
+>FBgn0042231_X-element|3955|F|24|n=2
 TTGGCATCAATAGCAGTAAATCCA
->FBgn0042682_Rt1b|4357|R|29
+>FBgn0042231_X-element|3939|R|26|n=2
+TTGATGCCAATATTCCAACGTCTTGC
+>FBgn0042682_Rt1b|1086|F|23|n=1
+TTGCCAAGAATGCTAGCACGGGT
+>FBgn0042682_Rt1b|1070|R|26|n=2
+TTCTTGGCGACAGATGCGTAGCTGCC
+>FBgn0042682_Rt1b|1071|R|25|n=1
+TTCTTGGAGACAGATGCGTAGCTGC
+>FBgn0042682_Rt1b|1071|R|25|n=3
+TTCTTGGCGACAGATGCGTAGCTGC
+>FBgn0042682_Rt1b|1072|R|24|n=3
+TTCTTGGCGACAGATGCGTAGCTG
+>FBgn0042682_Rt1b|1073|R|23|n=1
+TTCTTGGCGACAGATGCGTAGCT
+>FBgn0042682_Rt1b|2920|F|23|n=1
+TTGTTACCAAAAAGCTAAGGAGG
+>FBgn0042682_Rt1b|2902|R|28|n=1
+TTGGTAACAAGCTTGTAGGCGAGGCCCC
+>FBgn0042682_Rt1b|2903|R|27|n=1
+TTGGTAACAAGCTTGTAGGCGAGGCCC
+>FBgn0042682_Rt1b|2904|R|26|n=2
+TTGGTAACAAGCTTGTAGGCGAGGCC
+>FBgn0042682_Rt1b|2904|R|26|n=1
+TTGGTAACAAGCTTGTAGGCGAGTCC
+>FBgn0042682_Rt1b|2905|R|25|n=2
+TTGGTAACAAGCTTGTAGGCGAGGC
+>FBgn0042682_Rt1b|2905|R|25|n=1
+TTGGTAACAAGCTTGTAGGCGAGGT
+>FBgn0042682_Rt1b|2906|R|24|n=25
+TTGGTAACAAGCTTGTAGGCGAGG
+>FBgn0042682_Rt1b|2907|R|23|n=1
+TTGGTAACAAGCTTGGAGGCGAG
+>FBgn0042682_Rt1b|2907|R|23|n=15
+TTGGTAACAAGCTTGTAGGCGAG
+>FBgn0042682_Rt1b|2920|F|25|n=1
+TTGTTACCAAAAAGCTAAGGAGGAG
+>FBgn0042682_Rt1b|2920|F|26|n=1
+TTGTTACCAAAAAGCTAAGGAGGAGA
+>FBgn0042682_Rt1b|2920|F|27|n=1
+TTGTTACCAAAAAGCTAAGGAGGAGAG
+>FBgn0042682_Rt1b|2920|F|23|n=1
+TTGTTACCAACAAGCTAAGGAGG
+>FBgn0042682_Rt1b|2920|F|24|n=2
+TTGTTACCAACAAGCTAAGGAGGA
+>FBgn0042682_Rt1b|4376|F|24|n=1
+TTCCAGGCAAGAGGCACACGAGTG
+>FBgn0042682_Rt1b|4357|R|29|n=2
 TTGCCTGGAAGCGCCACTCCGCATTAGGC
->FBgn0042682_Rt1b|4357|R|29
-TTGCCTGGAAGCGCCACTCCGCATTAGGC
->FBgn0042682_Rt1b|4359|R|27
+>FBgn0042682_Rt1b|4359|R|27|n=1
 TTGCCTGGAAGCGCCACTCCGCATTAG
->FBgn0042682_Rt1b|4360|R|26
-TTGCCTGGAAGCGCCACTCCGCATTA
->FBgn0042682_Rt1b|4360|R|26
-TTGCCTGGAAGCGCCACTCCGCATTA
->FBgn0042682_Rt1b|4360|R|26
-TTGCCTGGAAGCGCCACTCCGCATTA
->FBgn0042682_Rt1b|4360|R|26
-TTGCCTGGAAGCGCCACTCCGCATTA
->FBgn0042682_Rt1b|4360|R|26
+>FBgn0042682_Rt1b|4360|R|26|n=5
 TTGCCTGGAAGCGCCACTCCGCATTA
->FBgn0042682_Rt1b|4361|R|25
-TTGCCTGGAAGCGCCACTCCGCATA
->FBgn0042682_Rt1b|4361|R|25
-TTGCCTGGAAGCGCCACTCCGCATA
->FBgn0042682_Rt1b|4361|R|25
+>FBgn0042682_Rt1b|4361|R|25|n=4
 TTGCCTGGAAGCGCCACTCCGCATA
->FBgn0042682_Rt1b|4361|R|25
-TTGCCTGGAAGCGCCACTCCGCATA
->FBgn0042682_Rt1b|4361|R|25
-TTGCCTGGAAGCGCCACTCCGCATT
->FBgn0042682_Rt1b|4361|R|25
+>FBgn0042682_Rt1b|4361|R|25|n=6
 TTGCCTGGAAGCGCCACTCCGCATT
->FBgn0042682_Rt1b|4361|R|25
-TTGCCTGGAAGCGCCACTCCGCATT
->FBgn0042682_Rt1b|4361|R|25
-TTGCCTGGAAGCGCCACTCCGCATT
->FBgn0042682_Rt1b|4361|R|25
-TTGCCTGGAAGCGCCACTCCGCATT
->FBgn0042682_Rt1b|4361|R|25
-TTGCCTGGAAGCGCCACTCCGCATT
->FBgn0042682_Rt1b|4362|R|24
-TTGCCTGGAAGCGCCACTCCGCAT
->FBgn0042682_Rt1b|4362|R|24
+>FBgn0042682_Rt1b|4362|R|24|n=6
 TTGCCTGGAAGCGCCACTCCGCAT
->FBgn0042682_Rt1b|4362|R|24
-TTGCCTGGAAGCGCCACTCCGCAT
->FBgn0042682_Rt1b|4362|R|24
-TTGCCTGGAAGCGCCACTCCGCAT
->FBgn0042682_Rt1b|4362|R|24
-TTGCCTGGAAGCGCCACTCCGCAT
->FBgn0042682_Rt1b|4362|R|24
-TTGCCTGGAAGCGCCACTCCGCAT
->FBgn0042682_Rt1b|4363|R|23
-TTGCCTGGAAGCGCCACTCCGCA
->FBgn0042682_Rt1b|4363|R|23
+>FBgn0042682_Rt1b|4363|R|23|n=2
 TTGCCTGGAAGCGCCACTCCGCA
->FBgn0042682_Rt1b|2902|R|28
-TTGGTAACAAGCTTGTAGGCGAGGCCCC
->FBgn0042682_Rt1b|2903|R|27
-TTGGTAACAAGCTTGTAGGCGAGGCCC
->FBgn0042682_Rt1b|2904|R|26
-TTGGTAACAAGCTTGTAGGCGAGGCC
->FBgn0042682_Rt1b|2904|R|26
-TTGGTAACAAGCTTGTAGGCGAGGCC
->FBgn0042682_Rt1b|2904|R|26
-TTGGTAACAAGCTTGTAGGCGAGTCC
->FBgn0042682_Rt1b|2905|R|25
-TTGGTAACAAGCTTGTAGGCGAGGC
->FBgn0042682_Rt1b|2905|R|25
-TTGGTAACAAGCTTGTAGGCGAGGC
->FBgn0042682_Rt1b|2905|R|25
-TTGGTAACAAGCTTGTAGGCGAGGT
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2906|R|24
-TTGGTAACAAGCTTGTAGGCGAGG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGGAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|2907|R|23
-TTGGTAACAAGCTTGTAGGCGAG
->FBgn0042682_Rt1b|1070|R|26
-TTCTTGGCGACAGATGCGTAGCTGCC
->FBgn0042682_Rt1b|1070|R|26
-TTCTTGGCGACAGATGCGTAGCTGCC
->FBgn0042682_Rt1b|1071|R|25
-TTCTTGGAGACAGATGCGTAGCTGC
->FBgn0042682_Rt1b|1071|R|25
-TTCTTGGCGACAGATGCGTAGCTGC
->FBgn0042682_Rt1b|1071|R|25
-TTCTTGGCGACAGATGCGTAGCTGC
->FBgn0042682_Rt1b|1071|R|25
-TTCTTGGCGACAGATGCGTAGCTGC
->FBgn0042682_Rt1b|1072|R|24
-TTCTTGGCGACAGATGCGTAGCTG
->FBgn0042682_Rt1b|1072|R|24
-TTCTTGGCGACAGATGCGTAGCTG
->FBgn0042682_Rt1b|1072|R|24
-TTCTTGGCGACAGATGCGTAGCTG
->FBgn0042682_Rt1b|1073|R|23
-TTCTTGGCGACAGATGCGTAGCT
->FBgn0042682_Rt1b|1086|F|23
-TTGCCAAGAATGCTAGCACGGGT
->FBgn0042682_Rt1b|2920|F|23
-TTGTTACCAAAAAGCTAAGGAGG
->FBgn0042682_Rt1b|2920|F|25
-TTGTTACCAAAAAGCTAAGGAGGAG
->FBgn0042682_Rt1b|2920|F|26
-TTGTTACCAAAAAGCTAAGGAGGAGA
->FBgn0042682_Rt1b|2920|F|27
-TTGTTACCAAAAAGCTAAGGAGGAGAG
->FBgn0042682_Rt1b|2920|F|23
-TTGTTACCAACAAGCTAAGGAGG
->FBgn0042682_Rt1b|2920|F|24
-TTGTTACCAACAAGCTAAGGAGGA
->FBgn0042682_Rt1b|2920|F|24
-TTGTTACCAACAAGCTAAGGAGGA
->FBgn0042682_Rt1b|4376|F|24
-TTCCAGGCAAGAGGCACACGAGTG
->FBgn0042682_Rt1b|4376|F|26
+>FBgn0042682_Rt1b|4376|F|26|n=1
 TTCCAGGCAAGAGGCACACGAGTGGC
->FBgn0044355_Quasimodo|1370|R|26
-TTCTTAGCAACTCTTCGTATGGGATT
->FBgn0044355_Quasimodo|1372|R|24
-TTCTTAGCAACTCTTCGTATGGGA
->FBgn0044355_Quasimodo|1386|F|24
+>FBgn0044355_Quasimodo|1386|F|24|n=1
 TTGCTAAGAAGACTTTACAACACC
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
+>FBgn0044355_Quasimodo|1370|R|26|n=1
+TTCTTAGCAACTCTTCGTATGGGATT
+>FBgn0044355_Quasimodo|1372|R|24|n=1
+TTCTTAGCAACTCTTCGTATGGGA
+>FBgn0063427_invader4|707|F|23|n=3
+TTCGTAGGAATTGAGACGTCGGC
+>FBgn0063427_invader4|691|R|26|n=15
 TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|691|R|26
-TTCCTACGAATCGCTGTATGAACAGT
->FBgn0063427_invader4|707|F|23
-TTCGTAGGAATTGAGACGTCGGC
->FBgn0063427_invader4|707|F|23
-TTCGTAGGAATTGAGACGTCGGC
->FBgn0063427_invader4|707|F|23
-TTCGTAGGAATTGAGACGTCGGC
->FBgn0063428_invader3|1923|R|26
-TTTCGTCCAAGAACTACATTATGACT
->FBgn0063428_invader3|1923|R|26
-TTTCGTCCAAGAACTACATTATGACT
->FBgn0063428_invader3|425|R|25
+>FBgn0063428_invader3|440|F|23|n=1
+TTCCCCAGAAACGCGTGGAGATT
+>FBgn0063428_invader3|425|R|25|n=1
 TTCTGGGGAAATGGCCTGCAGACGC
->FBgn0063428_invader3|427|R|23
+>FBgn0063428_invader3|427|R|23|n=1
 TTCTGGGGAAATGGCCTGCAGAC
->FBgn0063428_invader3|440|F|23
-TTCCCCAGAAACGCGTGGAGATT
->FBgn0063428_invader3|440|F|29
+>FBgn0063428_invader3|440|F|29|n=1
 TTCCCCAGAAACGCGTGGAGATTCACCGC
->FBgn0063428_invader3|440|F|27
+>FBgn0063428_invader3|440|F|27|n=1
 TTCCCCAGAAACGCGTGGCGATTCACC
->FBgn0063428_invader3|1939|F|25
+>FBgn0063428_invader3|1939|F|25|n=1
 TTGGACGAAATTTCATGGAAGCGTG
->FBgn0063429_invader2|1460|R|24
-TTTGCTGCAAAGTGCCCCATCTCA
->FBgn0063429_invader2|1474|F|25
+>FBgn0063428_invader3|1923|R|26|n=2
+TTTCGTCCAAGAACTACATTATGACT
+>FBgn0063429_invader2|1474|F|25|n=1
 TTGCAGCAAAGTGCCTAAAAAACAA
->FBgn0063430_invader1|2077|R|25
-TTTTATCGAACCAATAGAACTCGTA
->FBgn0063430_invader1|2077|R|25
-TTTTATCGAACCAATAGAACTCGTA
->FBgn0063430_invader1|2077|R|25
-TTTTATCGAACCAATAGAACTCGTA
->FBgn0063430_invader1|2079|R|23
-TTTTATCGAACCAATAGAACTCG
->FBgn0063430_invader1|1750|R|26
+>FBgn0063429_invader2|1460|R|24|n=1
+TTTGCTGCAAAGTGCCCCATCTCA
+>FBgn0063430_invader1|637|F|27|n=4
+TTGTCCGAAAACCAACTGGAAGGCAGC
+>FBgn0063430_invader1|621|R|26|n=1
+TTTCGGACAAGATGTAGTCCACCGTT
+>FBgn0063430_invader1|1766|F|25|n=1
+TTGTCAAGAATTCCATAGGCGTAGT
+>FBgn0063430_invader1|1750|R|26|n=3
 TTCTTGACAATTTTTGGAACCGGATT
->FBgn0063430_invader1|1750|R|26
-TTCTTGACAATTTTTGGAACCGGATT
->FBgn0063430_invader1|1750|R|26
-TTCTTGACAATTTTTGGAACCGGATT
->FBgn0063430_invader1|1751|R|25
+>FBgn0063430_invader1|1751|R|25|n=2
 TTCTTGACAATTTTTGGAACCGGAT
->FBgn0063430_invader1|1751|R|25
-TTCTTGACAATTTTTGGAACCGGAT
->FBgn0063430_invader1|1752|R|24
+>FBgn0063430_invader1|1752|R|24|n=3
 TTCTTGACAATTTTTGGAACCGGA
->FBgn0063430_invader1|1752|R|24
-TTCTTGACAATTTTTGGAACCGGA
->FBgn0063430_invader1|1752|R|24
-TTCTTGACAATTTTTGGAACCGGA
->FBgn0063430_invader1|621|R|26
-TTTCGGACAAGATGTAGTCCACCGTT
->FBgn0063430_invader1|637|F|27
-TTGTCCGAAAACCAACTGGAAGGCAGC
->FBgn0063430_invader1|637|F|27
-TTGTCCGAAAACCAACTGGAAGGCAGC
->FBgn0063430_invader1|637|F|27
-TTGTCCGAAAACCAACTGGAAGGCAGC
->FBgn0063430_invader1|637|F|27
-TTGTCCGAAAACCAACTGGAAGGCAGC
->FBgn0063430_invader1|1766|F|25
-TTGTCAAGAATTCCATAGGCGTAGT
->FBgn0063430_invader1|1766|F|27
+>FBgn0063430_invader1|1766|F|27|n=1
 TTGTCAAGAATTCCATAGGCGTAGTCG
->FBgn0063430_invader1|2092|F|24
+>FBgn0063430_invader1|2092|F|24|n=1
 TTCGATAAAATGTCTAAGTATGTT
->FBgn0063430_invader1|2092|F|26
+>FBgn0063430_invader1|2077|R|25|n=3
+TTTTATCGAACCAATAGAACTCGTA
+>FBgn0063430_invader1|2079|R|23|n=1
+TTTTATCGAACCAATAGAACTCG
+>FBgn0063430_invader1|2092|F|26|n=1
 TTCGATAAAATGTCTAAGTATGTTCG
->FBgn0063431_gypsy6|3031|R|29
+>FBgn0063431_gypsy6|3050|F|25|n=1
+TTCTTAGAAATGCTGAAGACTAGGA
+>FBgn0063431_gypsy6|3031|R|29|n=1
 TTTCTAAGAACGCGTTTCTGACTAAGGGT
->FBgn0063431_gypsy6|3050|F|25
-TTCTTAGAAATGCTGAAGACTAGGA
->FBgn0063433_gypsy4|3040|R|28
+>FBgn0063433_gypsy4|2753|F|24|n=2
+TTGACCTCAAATCGGGATTTCATC
+>FBgn0063433_gypsy4|2735|R|28|n=1
+TTGAGGTCAAGAGTAGTAAAGTACTGTG
+>FBgn0063433_gypsy4|2736|R|27|n=5
+TTGAGGTCAAGAGTAGTAAAGTACTGT
+>FBgn0063433_gypsy4|2737|R|26|n=11
+TTGAGGTCAAGAGTAGTAAAGTACTG
+>FBgn0063433_gypsy4|2738|R|25|n=5
+TTGAGGTCAAGAGTAGTAAAGTACT
+>FBgn0063433_gypsy4|2738|R|25|n=1
+TTGAGGTCAAGGGTAGTAAAGTACT
+>FBgn0063433_gypsy4|2739|R|24|n=25
+TTGAGGTCAAGAGTAGTAAAGTAC
+>FBgn0063433_gypsy4|2739|R|24|n=2
+TTGAGGTCAAGGGTAGTAAAGTAC
+>FBgn0063433_gypsy4|2740|R|23|n=1
+TTGAGGTCAAGAGTAGTAAAGTA
+>FBgn0063433_gypsy4|2770|F|23|n=1
+TTTCATCAAATCGAATTAGCGGA
+>FBgn0063433_gypsy4|2753|R|27|n=1
+TTTGATGAAATCCCGATTTGAGGTCAA
+>FBgn0063433_gypsy4|2754|R|26|n=1
+TTTGATGAAATCCCGATTTGAGGTCA
+>FBgn0063433_gypsy4|3058|F|24|n=1
+TTCTTCAAAAAGAGCGTGGAATAT
+>FBgn0063433_gypsy4|3040|R|28|n=1
 TTTTGAAGAACTTGGATTTTTCTTGAGA
->FBgn0063433_gypsy4|3044|R|24
+>FBgn0063433_gypsy4|3044|R|24|n=1
 TTTTGAAGAACTTGGATTTTTCTT
->FBgn0063433_gypsy4|2753|R|27
-TTTGATGAAATCCCGATTTGAGGTCAA
->FBgn0063433_gypsy4|2754|R|26
-TTTGATGAAATCCCGATTTGAGGTCA
->FBgn0063433_gypsy4|2735|R|28
-TTGAGGTCAAGAGTAGTAAAGTACTGTG
->FBgn0063433_gypsy4|2736|R|27
-TTGAGGTCAAGAGTAGTAAAGTACTGT
->FBgn0063433_gypsy4|2736|R|27
-TTGAGGTCAAGAGTAGTAAAGTACTGT
->FBgn0063433_gypsy4|2736|R|27
-TTGAGGTCAAGAGTAGTAAAGTACTGT
->FBgn0063433_gypsy4|2736|R|27
-TTGAGGTCAAGAGTAGTAAAGTACTGT
->FBgn0063433_gypsy4|2736|R|27
-TTGAGGTCAAGAGTAGTAAAGTACTGT
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2737|R|26
-TTGAGGTCAAGAGTAGTAAAGTACTG
->FBgn0063433_gypsy4|2738|R|25
-TTGAGGTCAAGAGTAGTAAAGTACT
->FBgn0063433_gypsy4|2738|R|25
-TTGAGGTCAAGAGTAGTAAAGTACT
->FBgn0063433_gypsy4|2738|R|25
-TTGAGGTCAAGAGTAGTAAAGTACT
->FBgn0063433_gypsy4|2738|R|25
-TTGAGGTCAAGAGTAGTAAAGTACT
->FBgn0063433_gypsy4|2738|R|25
-TTGAGGTCAAGAGTAGTAAAGTACT
->FBgn0063433_gypsy4|2738|R|25
-TTGAGGTCAAGGGTAGTAAAGTACT
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGAGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGGGTAGTAAAGTAC
->FBgn0063433_gypsy4|2739|R|24
-TTGAGGTCAAGGGTAGTAAAGTAC
->FBgn0063433_gypsy4|2740|R|23
-TTGAGGTCAAGAGTAGTAAAGTA
->FBgn0063433_gypsy4|2753|F|24
-TTGACCTCAAATCGGGATTTCATC
->FBgn0063433_gypsy4|2753|F|24
-TTGACCTCAAATCGGGATTTCATC
->FBgn0063433_gypsy4|2753|F|26
-TTGACCTCAAATCTGGATTTCATCAA
->FBgn0063433_gypsy4|2753|F|27
-TTGACCTCAAATCGGGATTTCATCAAA
->FBgn0063433_gypsy4|2770|F|23
-TTTCATCAAATCGAATTAGCGGA
->FBgn0063433_gypsy4|3058|F|24
-TTCTTCAAAAAGAGCGTGGAATAT
->FBgn0063436_gtwin|5250|R|24
+>FBgn0063436_gtwin|5264|F|27|n=1
+TTCGTTAAAAACAACAGAAGGTTAGGA
+>FBgn0063436_gtwin|5250|R|24|n=1
 TTTTAACGAAAACCTCGTCTCCTA
->FBgn0063436_gtwin|5264|F|27
-TTCGTTAAAAACAACAGAAGGTTAGGA
->FBgn0063440_baggins|3296|R|26
-TTTTAGCAAAAACGATGTCAAGCTGA
->FBgn0063440_baggins|3296|R|26
+>FBgn0063440_baggins|3312|F|24|n=1
+TTTGCTAAAAACGTTCGAAAAGCT
+>FBgn0063440_baggins|3296|R|26|n=3
 TTTTAGCAAAAACGATGTCAAGCTGA
->FBgn0063440_baggins|3296|R|26
-TTTTAGCAAAAACGATGTCAAGCTGA
->FBgn0063440_baggins|3298|R|24
+>FBgn0063440_baggins|3298|R|24|n=1
 TTTTAGCAAAAACGATGTCAAGCT
->FBgn0063440_baggins|3312|F|24
-TTTGCTAAAAACGTTCGAAAAGCT
->FBgn0063507_G2|1906|R|27
+>FBgn0063507_G2|1923|F|29|n=1
+TTCCACGGAACACCCGAGCAATGCCACCG
+>FBgn0063507_G2|1906|R|27|n=1
 TTCCGTGGGATCGCCTGAAGCCAAACT
->FBgn0063507_G2|1906|R|27
+>FBgn0063507_G2|1906|R|27|n=1
 TTTCGTGGGATCGCCTGAAGCCAAACT
->FBgn0063507_G2|1908|R|25
-TTCCGTGGGATCGCCTGAAGCCAAA
->FBgn0063507_G2|1908|R|25
-TTCCGTGGGATCGCCTGAAGCCAAA
->FBgn0063507_G2|1908|R|25
+>FBgn0063507_G2|1908|R|25|n=3
 TTCCGTGGGATCGCCTGAAGCCAAA
->FBgn0063507_G2|1923|F|29
-TTCCACGGAACACCCGAGCAATGCCACCG
->FBgn0063534_Doc2-element|3605|R|28
+>FBgn0063534_Doc2-element|342|F|25|n=1
+TTGCAACGAAACAACGCGTACTTCT
+>FBgn0063534_Doc2-element|327|R|25|n=1
+TTCGTTGCAATGAGAGCCGGCGATC
+>FBgn0063534_Doc2-element|3623|F|23|n=1
+TTCGCAAAAATCACGGAACGATC
+>FBgn0063534_Doc2-element|3605|R|28|n=1
 TTTTTGCGAAAGCCAAACTGATGCGATG
->FBgn0063534_Doc2-element|3606|R|27
-TTTTTGCGAAAGCCAAACTGATGCGAT
->FBgn0063534_Doc2-element|3606|R|27
+>FBgn0063534_Doc2-element|3606|R|27|n=2
 TTTTTGCGAAAGCCAAACTGATGCGAT
->FBgn0063534_Doc2-element|3607|R|26
-TTTTTGCGAAAGCCAAACTGATGCGA
->FBgn0063534_Doc2-element|3607|R|26
-TTTTTGCGAAAGCCAAACTGATGCGA
->FBgn0063534_Doc2-element|3607|R|26
-TTTTTGCGAAAGCCAAACTGATGCGA
->FBgn0063534_Doc2-element|3607|R|26
+>FBgn0063534_Doc2-element|3607|R|26|n=4
 TTTTTGCGAAAGCCAAACTGATGCGA
->FBgn0063534_Doc2-element|3608|R|25
-TTTTTGCGAAAGCCAAACTGATGCG
->FBgn0063534_Doc2-element|3608|R|25
-TTTTTGCGAAAGCCAAACTGATGCG
->FBgn0063534_Doc2-element|3608|R|25
-TTTTTGCGAAAGCCAAACTGATGCG
->FBgn0063534_Doc2-element|3608|R|25
-TTTTTGCGAAAGCCAAACTGATGCG
->FBgn0063534_Doc2-element|3608|R|25
+>FBgn0063534_Doc2-element|3608|R|25|n=7
 TTTTTGCGAAAGCCAAACTGATGCG
->FBgn0063534_Doc2-element|3608|R|25
-TTTTTGCGAAAGCCAAACTGATGCG
->FBgn0063534_Doc2-element|3608|R|25
-TTTTTGCGAAAGCCAAACTGATGCG
->FBgn0063534_Doc2-element|3609|R|24
+>FBgn0063534_Doc2-element|3609|R|24|n=1
 TTTTTGCGAAAGCCAAACTGATGC
->FBgn0063534_Doc2-element|3610|R|23
-TTTTTGCGAAAGCCAAACTGATG
->FBgn0063534_Doc2-element|3610|R|23
-TTTTTGCGAAAGCCAAACTGATG
->FBgn0063534_Doc2-element|3610|R|23
+>FBgn0063534_Doc2-element|3610|R|23|n=3
 TTTTTGCGAAAGCCAAACTGATG
->FBgn0063534_Doc2-element|327|R|25
-TTCGTTGCAATGAGAGCCGGCGATC
->FBgn0063534_Doc2-element|342|F|25
-TTGCAACGAAACAACGCGTACTTCT
->FBgn0063534_Doc2-element|3623|F|23
-TTCGCAAAAATCACGGAACGATC
->FBgn0063534_Doc2-element|3623|F|26
+>FBgn0063534_Doc2-element|3623|F|26|n=1
 TTCGCAAAAATCACGGAACGATCGAA
->FBgn0063594_Cr1a|2037|R|27
+>FBgn0063594_Cr1a|2054|F|24|n=2
+TTTGTAACAAGTCCTGAAAGTGTG
+>FBgn0063594_Cr1a|2037|R|27|n=1
 TTGTTACAAGACATAGATCCAACAGTC
->FBgn0063594_Cr1a|2039|R|25
+>FBgn0063594_Cr1a|2039|R|25|n=1
 TTGTTACAAAACATAGATCCAACAG
->FBgn0063594_Cr1a|2054|F|24
-TTTGTAACAAGTCCTGAAAGTGTG
->FBgn0063594_Cr1a|2054|F|24
-TTTGTAACAAGTCCTGAAAGTGTG
->FBgn0063919_Max-element|3879|R|29
+>FBgn0063919_Max-element|3898|F|23|n=1
+TTCTCAGCAAGTTCTGGGAGGTG
+>FBgn0063919_Max-element|3879|R|29|n=1
 TTGCTGAGAAGCGTGTTGAGCGAATCAGG
->FBgn0063919_Max-element|3880|R|28
+>FBgn0063919_Max-element|3880|R|28|n=1
 TTGCTGAGAAGCGTGTCGAGCGAATCAG
->FBgn0063919_Max-element|3880|R|28
+>FBgn0063919_Max-element|3880|R|28|n=1
 TTGCTGAGAAGCGTGTTGAGCGAATCAG
->FBgn0063919_Max-element|3882|R|26
+>FBgn0063919_Max-element|3882|R|26|n=1
 TTGCTGAGAAGCGTGTCGAGCGAATC
->FBgn0063919_Max-element|3883|R|25
+>FBgn0063919_Max-element|3883|R|25|n=1
 TTGCTGAGAAGCGTGTCGAGCGAAT
->FBgn0063919_Max-element|3884|R|24
+>FBgn0063919_Max-element|3884|R|24|n=1
 TTGCTGAGAAGCGTGTTGAGCGAA
->FBgn0063919_Max-element|3898|F|23
-TTCTCAGCAAGTTCTGGGAGGTG
->FBgn0063919_Max-element|3898|F|24
+>FBgn0063919_Max-element|3898|F|24|n=2
 TTCTCAGCAAGTTCTGGGAGGTGG
->FBgn0063919_Max-element|3898|F|24
-TTCTCAGCAAGTTCTGGGAGGTGG
->FBgn0063919_Max-element|3898|F|25
+>FBgn0063919_Max-element|3898|F|25|n=1
 TTCTCAGCAAGTTCTGGGAGGTGGA
->FBgn0063919_Max-element|3898|F|24
+>FBgn0063919_Max-element|3898|F|24|n=1
 TTCTCAGCAAGTTCTGGGAGGTGT
->FBgn0067385_invader6|3007|R|27
-TTCTAGTCAAAGTCGAAGGACTGCATA
->FBgn0067385_invader6|3007|R|27
-TTCTAGTCAAAGTCGAAGGACTGCATA
->FBgn0067385_invader6|3007|R|27
-TTCTAGTCAAAGTCGAAGGACTGCATA
->FBgn0067385_invader6|3007|R|27
+>FBgn0067385_invader6|3024|F|26|n=1
+TTGACTAGAATGACTTAGACTTAGAA
+>FBgn0067385_invader6|3007|R|27|n=4
 TTCTAGTCAAAGTCGAAGGACTGCATA
->FBgn0067385_invader6|3008|R|26
-TTCTAGTCAAAGTCGAAGGACTGCAT
->FBgn0067385_invader6|3008|R|26
+>FBgn0067385_invader6|3008|R|26|n=3
 TTCTAGTCAAAGTCGAAGGACTGCAT
->FBgn0067385_invader6|3008|R|26
-TTCTAGTCAAAGTCGAAGGACTGCAT
->FBgn0067385_invader6|3009|R|25
-TTCTAGTCAAAGTCGAAGGACTGCA
->FBgn0067385_invader6|3009|R|25
+>FBgn0067385_invader6|3009|R|25|n=5
 TTCTAGTCAAAGTCGAAGGACTGCA
->FBgn0067385_invader6|3009|R|25
-TTCTAGTCAAAGTCGAAGGACTGCA
->FBgn0067385_invader6|3009|R|25
-TTCTAGTCAAAGTCGAAGGACTGCA
->FBgn0067385_invader6|3009|R|25
-TTCTAGTCAAAGTCGAAGGACTGCA
->FBgn0067385_invader6|3010|R|24
+>FBgn0067385_invader6|3010|R|24|n=4
 TTCTAGTCAAAGTCGAAGGACTGC
->FBgn0067385_invader6|3010|R|24
-TTCTAGTCAAAGTCGAAGGACTGC
->FBgn0067385_invader6|3010|R|24
-TTCTAGTCAAAGTCGAAGGACTGC
->FBgn0067385_invader6|3010|R|24
-TTCTAGTCAAAGTCGAAGGACTGC
->FBgn0067385_invader6|3011|R|23
+>FBgn0067385_invader6|3011|R|23|n=1
 TTCTAGTCAAAGTCGAAGGACTG
->FBgn0067385_invader6|3024|F|26
-TTGACTAGAATGACTTAGACTTAGAA
->FBgn0067624_BS3|1011|R|25
+>FBgn0067624_BS3|1026|F|26|n=1
+TTGGCATCAATGGTGACAAATCAGCG
+>FBgn0067624_BS3|1011|R|25|n=3
 TTGATGCCAATGTTCCAGCGTTTTG
->FBgn0067624_BS3|1011|R|25
-TTGATGCCAATGTTCCAGCGTTTTG
->FBgn0067624_BS3|1011|R|25
-TTGATGCCAATGTTCCAGCGTTTTG
->FBgn0067624_BS3|1013|R|23
+>FBgn0067624_BS3|1013|R|23|n=3
 TTGATGCCAATGTTCCAACGTCT
->FBgn0067624_BS3|1013|R|23
-TTGATGCCAATGTTCCAACGTCT
->FBgn0067624_BS3|1013|R|23
-TTGATGCCAATGTTCCAACGTCT
->FBgn0067624_BS3|1026|F|26
-TTGGCATCAATGGTGACAAATCAGCG
->FBgn0067624_BS3|1026|F|24
+>FBgn0067624_BS3|1026|F|24|n=1
 TTGGCATCAATGGTGACAAATCTG
->FBgn0067624_BS3|1026|F|25
+>FBgn0067624_BS3|1026|F|25|n=1
 TTGGCATCAATGGTGACAAATCTGC
diff -r 320e06bf99b9 -r 4d9682bd3a6b test-data/paired_2.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/paired_2.fa	Sat Sep 02 06:35:15 2017 -0400
@@ -0,0 +1,370 @@
+>FBgn0000004_17.6|5844|R|21|n=1
+TTTTCGTCAAGTGTGCTAAAT
+>FBgn0000004_17.6|5855|F|23|n=1
+TTGACGAAAATGATCGAGTGGAT
+>FBgn0000005_297|1347|F|21|n=1
+TTGCACAAAATGAGGGAATTT
+>FBgn0000005_297|1334|R|23|n=1
+TTTTGCGCAATGGTAATTAAGGA
+>FBgn0000007_1731|4545|R|20|n=1
+TTGAGAGCAAAGGCCGAATG
+>FBgn0000007_1731|4555|F|24|n=1
+TTGCTCTCAATGCGCTGAGTTTGG
+>FBgn0000155_roo|2682|R|20|n=2
+TTTTTACCAAACGGATGCCT
+>FBgn0000155_roo|2692|F|24|n=1
+TTGGTAAAAAATGTATAAGTGAGC
+>FBgn0000155_roo|2692|F|27|n=1
+TTGGTAAAAAATGTATAAGTGAGCAGC
+>FBgn0000155_roo|3241|F|20|n=1
+TTGGGCAAAAAACTGATTTC
+>FBgn0000155_roo|3225|R|26|n=1
+TTTTGCCCAAGGAGACCGTCTATTTT
+>FBgn0000155_roo|3226|R|25|n=1
+TTTTGCCCAAGGAGACCGTCTATTT
+>FBgn0000155_roo|3227|R|24|n=2
+TTTTGCCCAAGGAGACCGTCTATT
+>FBgn0000155_roo|3228|R|23|n=1
+TTTTGCCCAAGGAGACCGTCTAT
+>FBgn0000155_roo|3229|R|22|n=2
+TTTTGCCCAAGGAGACCGTCTA
+>FBgn0000155_roo|3241|F|24|n=1
+TTGGGCAAAAAACTGATTTCGGGT
+>FBgn0000155_roo|3241|F|27|n=1
+TTGGGCAAAAAACTGATTTCGGGTGGA
+>FBgn0000155_roo|3241|F|28|n=1
+TTGGGCAAAAAACTGATTTCGGGTGGAT
+>FBgn0000155_roo|8644|R|21|n=1
+TTCTGCCAAAGGGCCAGCAAG
+>FBgn0000155_roo|8655|F|25|n=1
+TTTGGCAGAATGTTCACACATGAAA
+>FBgn0000349_copia|658|R|22|n=1
+TTCTCAAGAATCTGACGCGCCG
+>FBgn0000349_copia|670|F|25|n=1
+TTCTTGAGAATTTGGACGCCGTTTA
+>FBgn0000349_copia|4628|F|20|n=1
+TTTGCTGCAAGACGACCAAT
+>FBgn0000349_copia|4614|R|24|n=1
+TTGCAGCAAACCCAATTTGTCTCG
+>FBgn0000652_F-element|1564|F|20|n=2
+TTTTCTCGAAAGCAGCAAGT
+>FBgn0000652_F-element|1546|R|28|n=1
+TTCGAGAAAATTACTTCAGGATTTGTCT
+>FBgn0000652_F-element|1546|R|28|n=1
+TTCGGGAAAATTACTTCAGGATTTGTCT
+>FBgn0000652_F-element|1547|R|27|n=74
+TTCGAGAAAATTACTTCAGGATTTGTC
+>FBgn0000652_F-element|1547|R|27|n=1
+TTCGGGAAAATTACTTCAGGATTTGTC
+>FBgn0000652_F-element|1547|R|27|n=1
+TTTGAGAAAATTACTTCAGGATTTGTC
+>FBgn0000652_F-element|1548|R|26|n=3
+TTCGAGAAAATTACTTCAGGATTTGT
+>FBgn0000652_F-element|1549|R|25|n=22
+TTCGAGAAAATTACTTCAGGATTTG
+>FBgn0000652_F-element|1549|R|25|n=1
+TTCGGGAAAATTACTTCAGGATTTG
+>FBgn0000652_F-element|1550|R|24|n=2
+TTCGAGAAAATTACTTCAGGATTT
+>FBgn0000652_F-element|1551|R|23|n=7
+TTCGAGAAAATTACTTCAGGATT
+>FBgn0000652_F-element|1554|R|20|n=1
+TTCGAGAAAATTACTTCAGG
+>FBgn0000652_F-element|1564|F|23|n=2
+TTTTCTCGAAAGCAGCAAGTTTC
+>FBgn0000652_F-element|1564|F|24|n=2
+TTTTCTCGAAAGCAGCAAGTTTCG
+>FBgn0000652_F-element|1564|F|23|n=2
+TTTTCTCGAAAGCAGCTAGTTTC
+>FBgn0000652_F-element|1564|F|24|n=5
+TTTTCTCGAAAGCAGCTAGTTTCG
+>FBgn0000652_F-element|1564|F|25|n=1
+TTTTCTCGAAAGCAGCTAGTTTCGC
+>FBgn0000652_F-element|2248|F|20|n=1
+TTTCTTCCAAGCACTAGGGC
+>FBgn0000652_F-element|2231|R|27|n=1
+TTGGAAGAAATCCAGGAATTGAGCTTC
+>FBgn0000652_F-element|2233|R|25|n=5
+TTGGAAGAAATCCAGGAATTGAGCT
+>FBgn0000652_F-element|2471|R|21|n=2
+TTTAACCAAACTGCGGGAAAT
+>FBgn0000652_F-element|2482|F|23|n=2
+TTTGGTTAAAGCTGAATGTCTGC
+>FBgn0000652_F-element|2482|F|24|n=2
+TTTGGTTAAAGCTGAATGTCTGCC
+>FBgn0000652_F-element|2482|F|26|n=3
+TTTGGTTAAAGCTGAATGTCTGCCGG
+>FBgn0000652_F-element|2482|F|27|n=1
+TTTGGTTAAAGCTGAATGTCTGCCGGA
+>FBgn0000652_F-element|3524|F|21|n=2
+TTTCGCGAAAGCCACGGAACC
+>FBgn0000652_F-element|3507|R|27|n=1
+TTTCGCGAAATCCAAATTGGTGGGCTG
+>FBgn0000652_F-element|3509|R|25|n=6
+TTTCGCGAAATCCAAATTGGTGGGC
+>FBgn0000652_F-element|3510|R|24|n=1
+TTTCGCGAAATCCAAATTGGTGGG
+>FBgn0000652_F-element|3513|R|21|n=3
+TTTCGCGAAATCCAAATTGGT
+>FBgn0000652_F-element|3524|F|23|n=1
+TTTCGCGAAAGCCACGGAACCAT
+>FBgn0000652_F-element|3524|F|27|n=1
+TTTCGCGAAAGCCACGGAACCATTGAA
+>FBgn0000652_F-element|3524|F|24|n=1
+TTTCGCGAAAGCCATGGAACCATT
+>FBgn0000652_F-element|3524|F|26|n=1
+TTTCGCGAAAGCCATGGAACCATTGA
+>FBgn0002697_mdg1|4301|R|22|n=1
+TTCTTTGGAAAGAATTTGGGGC
+>FBgn0002697_mdg1|4313|F|25|n=1
+TTCCAAAGAATGATGACCCTTGCAT
+>FBgn0003007_opus|5558|F|21|n=1
+TTCCTAGAAATTTATCGTTGC
+>FBgn0003007_opus|5540|R|28|n=1
+TTTCTAGGAACGTAGAATGGAATCTCTC
+>FBgn0003007_opus|5540|R|28|n=1
+TTTCTAGGAACGTAGAGTGGAATCTCTC
+>FBgn0003007_opus|5542|R|26|n=1
+TTTCTAGGAACGTAGAATGGAATCTC
+>FBgn0003007_opus|5542|R|26|n=2
+TTTCTAGGAACGTAGAGTGGAATCTC
+>FBgn0003007_opus|5543|R|25|n=1
+TTTCTAGGAACGTAGAGTGGAATCT
+>FBgn0003007_opus|5544|R|24|n=7
+TTTCTAGGAACGTAGAGTGGAATC
+>FBgn0003122_pogo|1819|F|22|n=1
+TTCTATGGAAGACAAGCTGTTT
+>FBgn0003122_pogo|1804|R|25|n=1
+TTCCATAGAATTCAAGTTTTGCAAA
+>FBgn0003122_pogo|1806|R|23|n=1
+TTCCATAGAATTCAAGTTTTGCA
+>FBgn0003908_R1A1-element|4690|F|22|n=1
+TTGGCGAAAACTAGATCTTCGA
+>FBgn0003908_R1A1-element|4671|R|29|n=1
+TTTTCGCCAAGGCGCTGCACTCCAAGTCC
+>FBgn0003908_R1A1-element|4672|R|28|n=8
+TTTTCGCCAAGGCGCTGCACTCCAAGTC
+>FBgn0003908_R1A1-element|4673|R|27|n=1
+TTTTCGCCAAGGCGCTGCACCCCAAGT
+>FBgn0003908_R1A1-element|4673|R|27|n=4
+TTTTCGCCAAGGCGCTGCACTCCAAGT
+>FBgn0003908_R1A1-element|4674|R|26|n=1
+TTTTCGCCAAGGCGCTGCACCCCAAG
+>FBgn0003908_R1A1-element|4674|R|26|n=29
+TTTTCGCCAAGGCGCTGCACTCCAAG
+>FBgn0003908_R1A1-element|4674|R|26|n=2
+TTTTCGCCAAGGCGCTGCACTTCAAG
+>FBgn0003908_R1A1-element|4674|R|26|n=1
+TTTTCGTCAAGGCGCTGCACTCCAAG
+>FBgn0003908_R1A1-element|4675|R|25|n=1
+TTTTCGCCAAGGCGCTGCACCCCAA
+>FBgn0003908_R1A1-element|4675|R|25|n=10
+TTTTCGCCAAGGCGCTGCACTCCAA
+>FBgn0003908_R1A1-element|4675|R|25|n=1
+TTTTCGCCAAGGCGCTGCACTTCAA
+>FBgn0003908_R1A1-element|4676|R|24|n=21
+TTTTCGCCAAGGCGCTGCACTCCA
+>FBgn0003908_R1A1-element|4676|R|24|n=2
+TTTTCGCCAAGGCGCTGCACTTCA
+>FBgn0003908_R1A1-element|4677|R|23|n=12
+TTTTCGCCAAGGCGCTGCACTCC
+>FBgn0003908_R1A1-element|4678|R|22|n=18
+TTTTCGCCAAGGCGCTGCACTC
+>FBgn0003908_R1A1-element|4690|F|23|n=8
+TTGGCGAAAACTGGATCTTCGAG
+>FBgn0003908_R1A1-element|4690|F|24|n=9
+TTGGCGAAAACTGGATCTTCGAGA
+>FBgn0003908_R1A1-element|4690|F|25|n=11
+TTGGCGAAAACTGGATCTTCGAGAG
+>FBgn0003908_R1A1-element|4690|F|26|n=6
+TTGGCGAAAACTGGATCTTCGAGAGA
+>FBgn0003908_R1A1-element|4690|F|27|n=20
+TTGGCGAAAACTGGATCTTCGAGAGAA
+>FBgn0003908_R1A1-element|4690|F|28|n=4
+TTGGCGAAAACTGGATCTTCGAGAGAAT
+>FBgn0003908_R1A1-element|4690|F|24|n=7
+TTGGCGAAAACTGGATCTTCGAGG
+>FBgn0003908_R1A1-element|4690|F|25|n=12
+TTGGCGAAAACTGGATCTTCGAGGG
+>FBgn0003908_R1A1-element|4690|F|26|n=2
+TTGGCGAAAACTGGATCTTCGAGGGA
+>FBgn0003908_R1A1-element|4690|F|27|n=9
+TTGGCGAAAACTGGATCTTCGAGGGAA
+>FBgn0003908_R1A1-element|4690|F|28|n=1
+TTGGCGAAAACTGGATCTTCGAGGGAAT
+>FBgn0005673_1360|773|R|22|n=1
+TTTTCGCAATCATTCCATCCTG
+>FBgn0005673_1360|785|F|26|n=6
+TTTGCGAAAAATTGTTTGCTCAGAGC
+>FBgn0005673_1360|3197|R|22|n=1
+TTTGCTAGAAGACGATTTTCGG
+>FBgn0005673_1360|3209|F|23|n=1
+TTCTAGCACAACACGCACACATA
+>FBgn0005673_1360|3209|F|26|n=1
+TTCTAGCACAACACGCACACATATAC
+>FBgn0005673_1360|3209|F|27|n=1
+TTCTAGCACAACACGCACACATATACG
+>FBgn0010302_Burdock|3390|R|21|n=1
+TTTCATCGAAAGAAATTGGTA
+>FBgn0010302_Burdock|3401|F|25|n=2
+TTCGATGAAAGACAATGTTCTGCTT
+>FBgn0014947_flea|818|F|22|n=1
+TTCTAGAGAACGAAAGCGAGGA
+>FBgn0014947_flea|801|R|27|n=4
+TTCTCTAGAATTGCTTGTATTTGGTCG
+>FBgn0014947_flea|802|R|26|n=11
+TTCTCTAGAATTGCTTGTATTTGGTC
+>FBgn0014947_flea|803|R|25|n=12
+TTCTCTAGAATTGCTTGTATTTGGT
+>FBgn0014947_flea|804|R|24|n=2
+TTCTCTAGAATTGCTTGTATTTGG
+>FBgn0014947_flea|805|R|23|n=1
+TTCTCTAGAATTGCTTGTATTTG
+>FBgn0014947_flea|1182|F|22|n=1
+TTTCTTAGAATCTGAATGTGTC
+>FBgn0014947_flea|1164|R|28|n=2
+TTCTAAGAAAAGTTCTGCTGATCCAATC
+>FBgn0014947_flea|1166|R|26|n=2
+TTCTAAGAAAAGTTCTGCTGATCCAA
+>FBgn0014947_flea|1167|R|25|n=1
+TTCTAAGAAAAGTTCTGCTGATCCA
+>FBgn0014947_flea|1168|R|24|n=1
+TTCTAAGAAAAGTTCTGCTGATCC
+>FBgn0014947_flea|1169|R|23|n=1
+TTCTAAGAAAAGTTCTGCTGATC
+>FBgn0014947_flea|2754|R|21|n=1
+TTTAGACCAAATTCTGCAGCT
+>FBgn0014947_flea|2765|F|24|n=4
+TTGGTCTAAAAATAAAATGGAAGA
+>FBgn0014947_flea|2765|F|25|n=1
+TTGGTCTAAAAATAAAATGGAAGAA
+>FBgn0014947_flea|2765|F|26|n=1
+TTGGTCTAAAAATAAAATGGAAGAAG
+>FBgn0014947_flea|2765|F|28|n=1
+TTGGTCTAAAAATAAAATGGAAGAAGTG
+>FBgn0015945_GATE|3158|F|20|n=3
+TTCGTTCCAAATGAGCAAGC
+>FBgn0015945_GATE|3140|R|28|n=9
+TTGGAACGAAATTGGCCTGATTAGCGGA
+>FBgn0015945_GATE|3141|R|27|n=4
+TTGGAACGAAATTGGCCTGATTAGCGG
+>FBgn0015945_GATE|3142|R|26|n=17
+TTGGAACGAAATTGGCCTGATTAGCG
+>FBgn0015945_GATE|3143|R|25|n=86
+TTGGAACGAAATTGGCCTGATTAGC
+>FBgn0015945_GATE|3144|R|24|n=17
+TTGGAACGAAATTGGCCTGATTAG
+>FBgn0015945_GATE|6234|R|22|n=1
+TTGAAGGAAATCGCGGGAAAGC
+>FBgn0015945_GATE|6246|F|25|n=1
+TTTCCTTCAAGCCGTAAAAGAGTCG
+>FBgn0015945_GATE|6246|F|26|n=1
+TTTCCTTCAAGCCGTAAAAGAGTCGG
+>FBgn0042682_Rt1b|1075|R|21|n=1
+TTCTTGGCGACAGATGCGTAG
+>FBgn0042682_Rt1b|1086|F|23|n=1
+TTGCCAAGAATGCTAGCACGGGT
+>FBgn0042682_Rt1b|2920|F|22|n=1
+TTGTTACCAAAAAGCTAAGGAG
+>FBgn0042682_Rt1b|2902|R|28|n=1
+TTGGTAACAAGCTTGTAGGCGAGGCCCC
+>FBgn0042682_Rt1b|2903|R|27|n=1
+TTGGTAACAAGCTTGTAGGCGAGGCCC
+>FBgn0042682_Rt1b|2904|R|26|n=2
+TTGGTAACAAGCTTGTAGGCGAGGCC
+>FBgn0042682_Rt1b|2904|R|26|n=1
+TTGGTAACAAGCTTGTAGGCGAGTCC
+>FBgn0042682_Rt1b|2905|R|25|n=2
+TTGGTAACAAGCTTGTAGGCGAGGC
+>FBgn0042682_Rt1b|2905|R|25|n=1
+TTGGTAACAAGCTTGTAGGCGAGGT
+>FBgn0042682_Rt1b|2906|R|24|n=25
+TTGGTAACAAGCTTGTAGGCGAGG
+>FBgn0042682_Rt1b|2907|R|23|n=1
+TTGGTAACAAGCTTGGAGGCGAG
+>FBgn0042682_Rt1b|2907|R|23|n=15
+TTGGTAACAAGCTTGTAGGCGAG
+>FBgn0042682_Rt1b|2908|R|22|n=1
+TTGGTAACAAGCTTGTAGGCGA
+>FBgn0042682_Rt1b|2920|F|23|n=1
+TTGTTACCAAAAAGCTAAGGAGG
+>FBgn0042682_Rt1b|2920|F|25|n=1
+TTGTTACCAAAAAGCTAAGGAGGAG
+>FBgn0042682_Rt1b|2920|F|26|n=1
+TTGTTACCAAAAAGCTAAGGAGGAGA
+>FBgn0042682_Rt1b|2920|F|27|n=1
+TTGTTACCAAAAAGCTAAGGAGGAGAG
+>FBgn0042682_Rt1b|2920|F|23|n=1
+TTGTTACCAACAAGCTAAGGAGG
+>FBgn0042682_Rt1b|2920|F|24|n=2
+TTGTTACCAACAAGCTAAGGAGGA
+>FBgn0042682_Rt1b|4364|R|22|n=1
+TTGCCTGGAAGCGCCACTCCGC
+>FBgn0042682_Rt1b|4376|F|24|n=1
+TTCCAGGCAAGAGGCACACGAGTG
+>FBgn0042682_Rt1b|4376|F|26|n=1
+TTCCAGGCAAGAGGCACACGAGTGGC
+>FBgn0062343_Dm88|4210|R|21|n=1
+TTGGTTAGAACATCTGCCATC
+>FBgn0062343_Dm88|4221|F|24|n=1
+TTCTAACCAAGAATTTGAATAGAT
+>FBgn0063427_invader4|707|F|22|n=2
+TTCGTAGGAATGGAGACGTCGG
+>FBgn0063427_invader4|691|R|26|n=15
+TTCCTACGAATCGCTGTATGAACAGT
+>FBgn0063428_invader3|440|F|22|n=2
+TTCCCCAGAAACGCGTGGCGAT
+>FBgn0063428_invader3|425|R|25|n=1
+TTCTGGGGAAATGGCCTGCAGACGC
+>FBgn0063428_invader3|427|R|23|n=1
+TTCTGGGGAAATGGCCTGCAGAC
+>FBgn0063430_invader1|2082|R|20|n=1
+TTTTATCGAACCAATAGAAC
+>FBgn0063430_invader1|2092|F|24|n=1
+TTCGATAAAATGTCTAAGTATGTT
+>FBgn0063430_invader1|2092|F|26|n=1
+TTCGATAAAATGTCTAAGTATGTTCG
+>FBgn0063433_gypsy4|3058|F|22|n=1
+TTCTTCAAAAAGAGCGTGGAAT
+>FBgn0063433_gypsy4|3040|R|28|n=1
+TTTTGAAGAACTTGGATTTTTCTTGAGA
+>FBgn0063433_gypsy4|3044|R|24|n=1
+TTTTGAAGAACTTGGATTTTTCTT
+>FBgn0063440_baggins|5170|F|21|n=1
+TTGCACAAAATTGGCATTGCA
+>FBgn0063440_baggins|5154|R|26|n=1
+TTTTGTGCAAATGGCTGTGAAGTCGG
+>FBgn0063919_Max-element|3887|R|21|n=2
+TTGCTGAGAAGCGTGTTGAGC
+>FBgn0063919_Max-element|3898|F|23|n=1
+TTCTCAGCAAGTTCTGGGAGGTG
+>FBgn0063919_Max-element|3898|F|24|n=2
+TTCTCAGCAAGTTCTGGGAGGTGG
+>FBgn0063919_Max-element|3898|F|25|n=1
+TTCTCAGCAAGTTCTGGGAGGTGGA
+>FBgn0063919_Max-element|3898|F|24|n=1
+TTCTCAGCAAGTTCTGGGAGGTGT
+>FBgn0067385_invader6|3024|F|21|n=1
+TTGACTAGAATGACTTAGACT
+>FBgn0067385_invader6|3007|R|27|n=4
+TTCTAGTCAAAGTCGAAGGACTGCATA
+>FBgn0067385_invader6|3008|R|26|n=3
+TTCTAGTCAAAGTCGAAGGACTGCAT
+>FBgn0067385_invader6|3009|R|25|n=5
+TTCTAGTCAAAGTCGAAGGACTGCA
+>FBgn0067385_invader6|3010|R|24|n=4
+TTCTAGTCAAAGTCGAAGGACTGC
+>FBgn0067385_invader6|3011|R|23|n=1
+TTCTAGTCAAAGTCGAAGGACTG
+>FBgn0067385_invader6|3014|R|20|n=1
+TTCTAGTCAAAGTCGAAGGA
+>FBgn0067385_invader6|3024|F|26|n=1
+TTGACTAGAATGACTTAGACTTAGAA
+>FBgn0067624_BS3|1016|R|20|n=1
+TTGATGCCAATGTTCCAACG
+>FBgn0067624_BS3|1026|F|26|n=1
+TTGGCATCAATGGTGACAAATCAGCG
+>FBgn0067624_BS3|1026|F|24|n=1
+TTGGCATCAATGGTGACAAATCTG
+>FBgn0067624_BS3|1026|F|25|n=1
+TTGGCATCAATGGTGACAAATCTGC