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comparison snvtocnv.xml @ 2:e0724d649885 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/snvtocnv commit 116f2555558a283190cd1dd60ee25b359bcda51e
author artbio
date Fri, 20 May 2022 17:07:54 +0000
parents d2833cfb3f08
children
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1:d2833cfb3f08 2:e0724d649885
1 <tool id="snvtocnv" name="Infer CNVs from SNVs" version="3.0.0+galaxy0"> 1 <tool id="snvtocnv" name="Infer CNVs from SNVs" version="3.0.0+galaxy1">
2 <description> 2 <description>
3 </description> 3 </description>
4 <macros> 4 <macros>
5 <import>macro.xml</import> 5 <import>macro.xml</import>
6 </macros> 6 </macros>
32 <inputs> 32 <inputs>
33 <param name="refwig" type="data" format="txt" label="GC wigle of reference genome"/> 33 <param name="refwig" type="data" format="txt" label="GC wigle of reference genome"/>
34 <param name="input_snvs" type="data" format="vcf" label="SNVs to process in a vcf file"/> 34 <param name="input_snvs" type="data" format="vcf" label="SNVs to process in a vcf file"/>
35 </inputs> 35 </inputs>
36 <outputs> 36 <outputs>
37 <data name="wiggle" format="txt" label="binned wiggle" /> 37 <data name="wiggle" format="wig" label="binned wiggle" />
38 <data name="sample_segment" format="txt" label="sample segments" from_work_dir="test/sample_segments.txt" /> 38 <data name="sample_segment" format="tabular" label="sample segments" from_work_dir="test/sample_segments.txt" />
39 <data name="alt_solutions" format="txt" label="alternate solutions" from_work_dir="test/sample_alternative_solutions.txt" /> 39 <data name="alt_solutions" format="tabular" label="alternate solutions" from_work_dir="test/sample_alternative_solutions.txt" />
40 <data name="cnvs" format="tabular" label="Annotated CNVs" /> 40 <data name="cnvs" format="tabular" label="Annotated CNVs" />
41 <data name="chrom_depths" format="pdf" label="Chromosomes sequencing depth" from_work_dir="test/sample_chromosome_depths.pdf"/> 41 <data name="chrom_depths" format="pdf" label="Chromosomes sequencing depth" from_work_dir="test/sample_chromosome_depths.pdf"/>
42 <data name="chrom_view" format="pdf" label="Chromosomes views" from_work_dir="test/sample_chromosome_view.pdf"/> 42 <data name="chrom_view" format="pdf" label="Chromosomes views" from_work_dir="test/sample_chromosome_view.pdf"/>
43 <data name="genome_view" format="pdf" label="Genome view" from_work_dir="test/sample_genome_view.pdf"/> 43 <data name="genome_view" format="pdf" label="Genome view" from_work_dir="test/sample_genome_view.pdf"/>
44 <data name="model_fit" format="pdf" label="Cellularity and Diploidy model" from_work_dir="test/sample_model_fit.pdf"/> 44 <data name="model_fit" format="pdf" label="Cellularity and Diploidy model" from_work_dir="test/sample_model_fit.pdf"/>