Mercurial > repos > artbio > snvtocnv

comparison sequenza_index.xml @ 2:e0724d649885 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/snvtocnv commit 116f2555558a283190cd1dd60ee25b359bcda51e
author artbio
date Fri, 20 May 2022 17:07:54 +0000
parents b77d7a0a45e8
children
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1:d2833cfb3f08 2:e0724d649885
1 <tool id="sequenzaindex" name="create GC_wiggle of reference genome" version="0.7.0"> 1 <tool id="sequenzaindex" name="create GC_wiggle of reference genome" version="3.0.0+galaxy1">
2 <description> 2 <description>
3 </description> 3 </description>
4 <macros> 4 <macros>
5 <import>macro.xml</import> 5 <import>macro.xml</import>
6 </macros> 6 </macros>
18 <param name="reference" type="data" format="fasta" label="Genome in fasta format" 18 <param name="reference" type="data" format="fasta" label="Genome in fasta format"
19 help="the fasta genome whose GC content will be indexed"/> 19 help="the fasta genome whose GC content will be indexed"/>
20 <param name="window" type="integer" value="50" label="window size" help="The size of the wiggle for GC content calculation" /> 20 <param name="window" type="integer" value="50" label="window size" help="The size of the wiggle for GC content calculation" />
21 </inputs> 21 </inputs>
22 <outputs> 22 <outputs>
23 <data name="refwig" format="txt" label="reference_wig" /> 23 <data name="refwig" format="wig" label="reference_wig" />
24 </outputs> 24 </outputs>
25 <tests> 25 <tests>
26 <test> 26 <test>
27 <param name="window" value="100" ftype="vcf" /> 27 <param name="window" value="100" ftype="vcf" />
28 <param name="reference" value="hg19_chr22.fa.gz" /> 28 <param name="reference" value="hg19_chr22.fa.gz" />
29 <output name="refwig" file="hg19.GCref.txt" ftype="txt" /> 29 <output name="refwig" file="hg19.GCref.txt" ftype="wig" />
30 </test> 30 </test>
31 <test> 31 <test>
32 <param name="window" value="100" ftype="vcf" /> 32 <param name="window" value="100" ftype="vcf" />
33 <param name="reference" value="hg38_chr22.fa.gz" /> 33 <param name="reference" value="hg38_chr22.fa.gz" />
34 <output name="refwig" file="hg38.GCref.txt" ftype="txt" /> 34 <output name="refwig" file="hg38.GCref.txt" ftype="wig" />
35 </test> 35 </test>
36 36
37 </tests> 37 </tests>
38 <help> 38 <help>
39 39