Mercurial > repos > artbio > tarfast5

comparison tarfast5.xml @ 1:436f11e1ed6d draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/tarfast5 commit 8bd895c48953189b94dbe095db8767b82187a491"
author artbio
date Thu, 06 May 2021 23:12:50 +0000
parents 0e548765d204
children e660e8605dd8
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0:0e548765d204 1:436f11e1ed6d
1 <tool id="tarfast5" name="tarfast5" version="0.3"> 1 <tool id="tarfast5" name="tarfast5" version="0.4">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.6">pigz</requirement> 4 <requirement type="package" version="2.6">pigz</requirement>
5 <requirement type="package" version="1.34">tar</requirement> 5 <requirement type="package" version="1.34">tar</requirement>
6 </requirements> 6 </requirements>
9 </stdio> 9 </stdio>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 #for $file in $inputs: 11 #for $file in $inputs:
12 ln -s $file ${file.element_identifier}.h5 && 12 ln -s $file ${file.element_identifier}.h5 &&
13 #end for 13 #end for
14 tar -I pigz -cvhf $compressed_output *.h5 14 export PIGZ="-p \${GALAXY_SLOTS:-4}" &&
15 tar -cvh --use-compress-program=pigz -f $compressed_output *.h5
15 ]]></command> 16 ]]></command>
16 <inputs> 17 <inputs>
17 <param name="inputs" type="data" format="h5" label="fast5 sequence files" multiple="true" /> 18 <param name="inputs" type="data" format="h5" label="fast5 sequence files" multiple="true" />
18 </inputs> 19 </inputs>
19 20