Mercurial > repos > artbio > trinity
comparison macros.xml @ 0:b3fe7c4ca5aa draft default tip
planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/trinity commit bfb22f460d6f3825ff1bd3eed924a5760c99c96d
| author | artbio |
|---|---|
| date | Sat, 17 Mar 2018 17:43:58 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:b3fe7c4ca5aa |
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| 1 <?xml version="1.0"?> | |
| 2 <macros> | |
| 3 <xml name="requirements"> | |
| 4 <requirements> | |
| 5 <requirement type="package" version="2.4.0">trinity</requirement> | |
| 6 <yield/> | |
| 7 </requirements> | |
| 8 </xml> | |
| 9 | |
| 10 <token name="@WRAPPER_VERSION@">2.4.0</token> | |
| 11 | |
| 12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@"> | |
| 13 #if $pool.inputs.strand.is_strand_specific: | |
| 14 --SS_lib_type $pool.inputs.strand.library_type | |
| 15 #end if | |
| 16 | |
| 17 $pool.inputs.jaccard_clip | |
| 18 </token> | |
| 19 | |
| 20 <xml name="input_paired_strand_jaccard"> | |
| 21 <conditional name="strand"> | |
| 22 <param name="is_strand_specific" type="boolean" checked="false" label="Strand specific data"/> | |
| 23 <when value="false" /> | |
| 24 <when value="true"> | |
| 25 <param name="library_type" argument="--SS_lib_type" type="select" label="Strand-specific library type"> | |
| 26 <option value="FR">Forward-Reverse</option> | |
| 27 <option value="RF">Reverse-Forward</option> | |
| 28 </param> | |
| 29 </when> | |
| 30 </conditional> | |
| 31 <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/> | |
| 32 </xml> | |
| 33 | |
| 34 <xml name="citation"> | |
| 35 <citations> | |
| 36 <citation type="doi">10.1038/nbt.1883</citation> | |
| 37 </citations> | |
| 38 </xml> | |
| 39 </macros> |