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comparison xpore_diffmod.xml @ 2:a5758bb680c8 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/xpore commit 59e86ba957774b2fb86b3f5dbd7be24f99dd60f7
author artbio
date Sun, 15 May 2022 15:11:49 +0000
parents ff53cf0d0bbd
children
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1:ff53cf0d0bbd 2:a5758bb680c8
1 <tool id="xpore_diffmod" name="xpore-diffmod" version="0.5.6+galaxy2"> 1 <tool id="xpore_diffmod" name="xpore-diffmod" version="2.1+galaxy0">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.6">xpore</requirement> 4 <requirement type="package" version="2.1">xpore</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <exit_code range="1:" level="fatal" description="Tool exception" /> 7 <exit_code range="1:" level="fatal" description="Tool exception" />
8 </stdio> 8 </stdio>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
28 printf "\nout: ./out\n" >> config.yml && 28 printf "\nout: ./out\n" >> config.yml &&
29 printf "\nmethod:\n" >> config.yml && 29 printf "\nmethod:\n" >> config.yml &&
30 printf " prefiltering:\n" >> config.yml && 30 printf " prefiltering:\n" >> config.yml &&
31 printf " method: t-test\n" >> config.yml && 31 printf " method: t-test\n" >> config.yml &&
32 printf " threshold: 0.1\n" >> config.yml && 32 printf " threshold: 0.1\n" >> config.yml &&
33 xpore-diffmod --config config.yml --n_processes \${GALAXY_SLOTS:-4} && 33 xpore diffmod --config config.yml --n_processes \${GALAXY_SLOTS:-4} &&
34 sed -i "s/,/\t/g" ./out/diffmod.table && 34 sed -i "s/,/\t/g" ./out/diffmod.table &&
35 mv ./out/diffmod.table $diffmod_table && 35 mv ./out/diffmod.table $diffmod_table &&
36 mv ./out/diffmod.log $diffmod_log && 36 mv ./out/diffmod.log $diffmod_log &&
37 mv ./config.yml $config 37 mv ./config.yml $config
38 38