Mercurial > repos > artbio > xpore
diff xpore_diffmod.xml @ 1:ff53cf0d0bbd draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/xpore commit 8a69e869b86c4c371c18e7fde1e6b6af41f315a4"
| author | artbio |
|---|---|
| date | Fri, 28 May 2021 23:32:25 +0000 |
| parents | b64b9a2bf4f0 |
| children | a5758bb680c8 |
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--- a/xpore_diffmod.xml Wed May 26 23:14:24 2021 +0000 +++ b/xpore_diffmod.xml Fri May 28 23:32:25 2021 +0000 @@ -1,8 +1,7 @@ -<tool id="xpore_diffmod" name="xpore-diffmod" version="0.5.6+galaxy1"> +<tool id="xpore_diffmod" name="xpore-diffmod" version="0.5.6+galaxy2"> <description></description> <requirements> <requirement type="package" version="0.5.6">xpore</requirement> - <requirement type="package" version="1.9.0">pyensembl</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Tool exception" /> @@ -31,9 +30,11 @@ printf " prefiltering:\n" >> config.yml && printf " method: t-test\n" >> config.yml && printf " threshold: 0.1\n" >> config.yml && - xpore-diffmod --config config.yml --n_processes \${GALAXY_SLOTS:-4} && - sed -i "s/,/\t/g" ./out/diffmod.table + sed -i "s/,/\t/g" ./out/diffmod.table && + mv ./out/diffmod.table $diffmod_table && + mv ./out/diffmod.log $diffmod_log && + mv ./config.yml $config ]]></command> <inputs> @@ -64,9 +65,9 @@ </inputs> <outputs> - <data format="tabular" name="diffmod_table" label="diffmod table" from_work_dir="./out/diffmod.table" /> - <data format="txt" name="diffmod_log" label="diffmod log" from_work_dir="./out/diffmod.log" /> - <data format="txt" name="config" label="configuration.yml" from_work_dir="./config.yml" /> + <data format="tabular" name="diffmod_table" label="diffmod table" /> + <data format="txt" name="diffmod_log" label="diffmod log" /> + <data format="txt" name="config" label="configuration.yml" /> </outputs> <tests> <test>