Mercurial > repos > artbio > yac_clipper

comparison yac.xml @ 5:6bfb7e333280 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 9c5f0b8e89dfe4347c610f42923f0acad2ecc81b"
author artbio
date Wed, 17 Mar 2021 22:09:32 +0000
parents f7947c5a18b8
children acbf910cd2ae
comparison
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4:f7947c5a18b8 5:6bfb7e333280
1 <tool id="yac" name="Clip adapter" version="2.3.0"> 1 <tool id="yac" name="Clip adapter" version="2.4.0">
2 <description /> 2 <description />
3 <requirements>
4 <requirement type="package" version="3.7.6">python</requirement>
5 </requirements>
3 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
4 python $__tool_directory__/yac.py 7 python $__tool_directory__/yac.py
5 --input $input 8 --input $input
6 --output 'clip.tmp' 9 --output 'clip.tmp'
7 --output_format 10 --output_format
17 #if ($out_format == 'fastagz') or ($out_format == 'fastqgz'): 20 #if ($out_format == 'fastagz') or ($out_format == 'fastqgz'):
18 gzip -c 'clip.tmp' > $output 21 gzip -c 'clip.tmp' > $output
19 #else 22 #else
20 mv clip.tmp $output 23 mv clip.tmp $output
21 #end if 24 #end if
22
23 ]]></command> 25 ]]></command>
24 <inputs> 26 <inputs>
25 <param format="fasta,fastq" label="Source file" name="input" type="data" /> 27 <param format="fasta,fastq" label="Source file" name="input" type="data" />
26 <param label="min size" name="min" size="4" type="integer" value="15" /> 28 <param label="min size" name="min" size="4" type="integer" value="15" />
27 <param label="max size" name="max" size="4" type="integer" value="36" /> 29 <param label="max size" name="max" size="4" type="integer" value="36" />