Mercurial > repos > artbio > yac_clipper
comparison yac.xml @ 6:acbf910cd2ae draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit a3e2a5c2c8d914a574ef35b0f1864ddbde70611b
| author | artbio |
|---|---|
| date | Mon, 28 Nov 2022 22:17:36 +0000 |
| parents | 6bfb7e333280 |
| children | 396bc2c718a1 |
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| 5:6bfb7e333280 | 6:acbf910cd2ae |
|---|---|
| 1 <tool id="yac" name="Clip adapter" version="2.4.0"> | 1 <tool id="yac" name="Clip adapter" version="2.5.0"> |
| 2 <description /> | 2 <description /> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.7.6">python</requirement> | 4 <requirement type="package" version="3.7.6">python</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 147 + Filters sequences on their size | 147 + Filters sequences on their size |
| 148 + Filters sequences containing unknown nucleotides (optional) | 148 + Filters sequences containing unknown nucleotides (optional) |
| 149 | 149 |
| 150 ------- | 150 ------- |
| 151 | 151 |
| 152 yac_clipper clips 7nt long motives in 5' of adapter sequences. | |
| 153 | |
| 154 It also accepts 1 mismatch in the searched 7nt motif | |
| 155 | |
| 152 **Inputs** | 156 **Inputs** |
| 153 | 157 |
| 154 1. A fastq or fasta file of reads to be clipped | 158 1. A fastq or fasta file of reads to be clipped |
| 155 2. Select the size of the reads to be kept | 159 2. Select the size of the reads to be kept |
| 156 3. Select an output format. When input is a fastq file, this may be fastq or fasta, whereas | 160 3. Select an output format. When input is a fastq file, this may be fastq or fasta, whereas |