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planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit 8e0f38a23e84e67d0e199a99ec318d334f928ade
author astroteam
date Fri, 04 Jul 2025 13:18:26 +0000
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7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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eba50a1f228e planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit 8e0f38a23e84e67d0e199a99ec318d334f928ade
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2 <tool id="astropy_csv2fits" name="csv2fits" version="0.1.0+galaxy1" profile="24.0">
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7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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3 <requirements>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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4 <requirement type="package" version="6.1.7">astropy</requirement>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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5 </requirements>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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6 <command detect_errors="exit_code"><![CDATA[
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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7 python '$py_script_file'
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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8 ]]></command>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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10 <configfiles>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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11 <configfile name="py_script_file">
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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12 from astropy.io import ascii
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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14 t = ascii.read("$input_file", delimiter='$input_file.metadata.delimiter')
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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15 t.write("$output", format='fits', overwrite=True)
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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16 </configfile>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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17 </configfiles>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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18 <inputs>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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19 <param name="input_file" type="data" label="Input File" format="csv,tsv" optional="false" />
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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20 </inputs>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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21 <outputs>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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22 <data name="output" format="fits" />
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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23 </outputs>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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24 <tests>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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25 <test expect_num_outputs="1">
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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26 <param name="input_file" value="fitstable.csv" />
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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27 <output name="output" file="fitstable.fits" />
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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28 </test>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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29 <test expect_num_outputs="1">
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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30 <param name="input_file" value="fitstable.tsv" />
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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31 <output name="output" file="fitstable.fits" />
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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32 </test>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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33 </tests>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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34 <help><![CDATA[
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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35 Convert a text table (CSV or TSV) to the binary table in the first extension of the FITS file.
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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36
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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37 This tool is a simple script based on Astropy package. See `astropy help <https://docs.astropy.org/en/latest/io/fits/>`_
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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38 for further documentation.
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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39 ]]></help>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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40 <citations>
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41 <citation type="doi">
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42 10.3847/1538-4357/ac7c74
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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43 </citation>
7f5c597801f0 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit b794237f7f48d27404592039d3d9ed50aed621e4
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44 </citations>
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45 </tool>