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comparison fits2bitmap.xml @ 3:44dbbc093fd6 draft default tip

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planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit 8e0f38a23e84e67d0e199a99ec318d334f928ade
author astroteam
date Fri, 04 Jul 2025 13:18:16 +0000
parents 6b6dc2b5e52d
children
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2:6b6dc2b5e52d 3:44dbbc093fd6
1 <tool id="astropy_fits2bitmap" name="astropy fits2bitmap" version="0.2.0+galaxy1" profile="21.05"> 1 <tool id="astropy_fits2bitmap" name="astropy fits2bitmap" version="0.3.0+galaxy0" profile="24.0">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="6.1.7">astropy</requirement> 3 <requirement type="package" version="6.1.7">astropy</requirement>
4 <requirement type="package" version="3.10.1">matplotlib</requirement> 4 <requirement type="package" version="3.10.1">matplotlib</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 #if $reverse_cmap: 7 #if $reverse_cmap:
8 #set $cmap = $cmap + "_r" 8 #set $cmap = $cmap + "_r"
9 #else: 9 #else:
10 #set $cmap = $cmap 10 #set $cmap = $cmap
11 #end if 11 #end if
12 fits2bitmap '$input_fits' --stretch '$stretch' --ext $hdu --cmap $cmap -o out.png 12 fits2bitmap '$input_fits' --stretch '$stretch' --ext $hdu --cmap $cmap -o out.$out_format && mv out.$out_format out
13 ]]></command> 13 ]]></command>
14 <inputs> 14 <inputs>
15 <param type="data" name="input_fits" format="fits" label="FITS file containing a sky image"/> 15 <param type="data" name="input_fits" format="fits" label="FITS file containing a sky image"/>
16 <param type="integer" name="hdu" value="0" min="0" label="Select input HDU number"/> 16 <param type="integer" name="hdu" value="0" min="0" label="Select input HDU number"/>
17 <param type="select" name="stretch" label="Stretch image scale" help="Type of image scale stretching"> 17 <param type="select" name="stretch" label="Stretch image scale" help="Type of image scale stretching">
97 <option value="tab20c">tab20c</option> 97 <option value="tab20c">tab20c</option>
98 <option value="terrain">terrain</option> 98 <option value="terrain">terrain</option>
99 <option value="winter">winter</option> 99 <option value="winter">winter</option>
100 </param> 100 </param>
101 <param type="boolean" name="reverse_cmap" checked="false" label="Reverse color map"/> 101 <param type="boolean" name="reverse_cmap" checked="false" label="Reverse color map"/>
102 <param type="select" name="out_format" label="Output format">
103 <option value="png">PNG</option>
104 <option value="tiff">TIFF</option>
105 <option value="jpg">JPEG</option>
106 </param>
102 </inputs> 107 </inputs>
103 <outputs> 108 <outputs>
104 <data name="output_png" format="png" from_work_dir="out.png" /> 109 <data name="output_img" format="png" from_work_dir="out">
110 <change_format>
111 <when input="out_format" value="tiff" format="tiff"/>
112 <when input="out_format" value="jpg" format="jpg"/>
113 </change_format>
114 </data>
105 </outputs> 115 </outputs>
106 <tests> 116 <tests>
107 <test> 117 <test>
108 <param name="input_fits" value="legacysurvey_image.fits"/> 118 <param name="input_fits" value="legacysurvey_image.fits"/>
109 <param name="stretch" value="log"/> 119 <param name="stretch" value="log"/>
110 <param name="cmap" value="jet"/> 120 <param name="cmap" value="jet"/>
111 <output name="output_png" file="legacysurvey_image.png"/> 121 <param name="out_format" value="png"/>
122 <output name="output_img" file="legacysurvey_image.png"/>
123 </test>
124 <test>
125 <param name="input_fits" value="legacysurvey_image.fits"/>
126 <param name="stretch" value="log"/>
127 <param name="cmap" value="jet"/>
128 <param name="out_format" value="tiff"/>
129 <output name="output_img" file="legacysurvey_image.tiff"/>
130 </test>
131 <test>
132 <param name="input_fits" value="legacysurvey_image.fits"/>
133 <param name="stretch" value="log"/>
134 <param name="cmap" value="jet"/>
135 <param name="out_format" value="jpg"/>
136 <output name="output_img" file="legacysurvey_image.jpg"/>
112 </test> 137 </test>
113 </tests> 138 </tests>
114 <help><![CDATA[ 139 <help><![CDATA[
115 Creates a bitmap file from a FITS sky image. 140 Creates a bitmap file from a FITS sky image.
116 The dynamic range of the FITS image is represented in the output bitmap image by applying "stretch" transformation. 141 The dynamic range of the FITS image is represented in the output bitmap image by applying "stretch" transformation.