Mercurial > repos > astroteam > crbeam_astro_tool

annotate Generate_figures.py @ 0:f40d05521dca draft default tip

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planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
author astroteam
date Fri, 25 Apr 2025 19:33:20 +0000
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f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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1 #!/usr/bin/env python
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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2 # coding: utf-8
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f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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4 #!/usr/bin/env python
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5
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6 # This script is generated with nb2galaxy
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7
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8 # flake8: noqa
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9
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10 import json
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11 import os
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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12 import shutil
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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13
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14 from oda_api.json import CustomJSONEncoder
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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16 # oda:usesResource oda:CRBeamS3 .
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17 # oda:CRBeamS3 a oda:S3 .
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18 # oda:CRBeamS3 oda:resourceBindingEnvVarName "S3_CREDENTIALS" .
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20 src_name = "NGC 1365" # http://odahub.io/ontology#AstrophysicalObject
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22 z_start = 0 # http://odahub.io/ontology#Float
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23 Npart = 2000 # http://odahub.io/ontology#Integer ; oda:lower_limit 1 ; oda:upper_limit 100000
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24 particle_type = "gamma" # http://odahub.io/ontology#String ; oda:allowed_value "gamma","electron","proton"
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25 Emax = 30 # http://odahub.io/ontology#Energy_TeV
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26 Emin = 0.01 # http://odahub.io/ontology#Energy_TeV
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27 EminSource = 1.0 # http://odahub.io/ontology#Energy_TeV
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28 Gamma = 2.0 # http://odahub.io/ontology#Float
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29 EGMF_fG = 10 # http://odahub.io/ontology#Float
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30 lmaxEGMF_Mpc = 5 # http://odahub.io/ontology#Float
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31 jet_half_size = 5.0 # oda:AngleDegrees
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32 jet_direction = 0.0 # oda:AngleDegrees
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33 psf = 1.0 # oda:AngleDegrees
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34 window_size_RA = 2.0 # oda:AngleDegrees
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35 window_size_DEC = 1.0 # oda:AngleDegrees
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36 EBL = "Franceschini 2017" # http://odahub.io/ontology#String ; oda:allowed_value "Franceschini 2017","Stecker 2016 lower limit","Stecker 2016 upper limit","Inoue 2012 Baseline","Inoue 2012 lower limit","Inoue 2012 upper limit"
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37
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38 _galaxy_wd = os.getcwd()
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39
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40 with open("inputs.json", "r") as fd:
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41 inp_dic = json.load(fd)
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42 if "C_data_product_" in inp_dic.keys():
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43 inp_pdic = inp_dic["C_data_product_"]
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44 else:
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45 inp_pdic = inp_dic
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46 src_name = str(inp_pdic["src_name"])
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47 z_start = float(inp_pdic["z_start"])
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48 Npart = int(inp_pdic["Npart"])
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49 particle_type = str(inp_pdic["particle_type"])
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50 Emax = float(inp_pdic["Emax"])
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51 Emin = float(inp_pdic["Emin"])
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52 EminSource = float(inp_pdic["EminSource"])
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53 Gamma = float(inp_pdic["Gamma"])
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54 EGMF_fG = float(inp_pdic["EGMF_fG"])
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55 lmaxEGMF_Mpc = float(inp_pdic["lmaxEGMF_Mpc"])
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56 jet_half_size = float(inp_pdic["jet_half_size"])
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57 jet_direction = float(inp_pdic["jet_direction"])
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58 psf = float(inp_pdic["psf"])
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59 window_size_RA = float(inp_pdic["window_size_RA"])
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60 window_size_DEC = float(inp_pdic["window_size_DEC"])
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61 EBL = str(inp_pdic["EBL"])
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62
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63 import os
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64
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65 from astropy import units as u
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66 from astropy.coordinates import SkyCoord
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67 from astropy.nddata import StdDevUncertainty
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68 from astropy.table import Table
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69 from gammapy.maps import Map, MapAxis
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70 from oda_api.api import ProgressReporter
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71 from oda_api.data_products import (
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72 LightCurveDataProduct,
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73 NumpyDataProduct,
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74 ODAAstropyTable,
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75 PictureProduct,
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76 )
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77 from specutils import Spectrum1D
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78 from utils import find_redshift
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79
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80 if z_start <= 0:
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81 z_start = find_redshift(src_name)
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82
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83 source = SkyCoord.from_name(src_name, frame="icrs", parse=False, cache=True)
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84
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85 pr = ProgressReporter()
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86 pr.report_progress(
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87 stage="Initialization",
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88 progress=0,
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89 substage="spectra",
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90 subprogress=30,
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91 message="some message",
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92 )
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93
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94 import subprocess
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95
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96 import light_curve as lc
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97 import numpy as np
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98 from crbeam import CRbeam
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99 from matplotlib import pyplot as plt
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100 from spec_plot import plot_spec
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101
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102 EGMF = EGMF_fG * 1e-15
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103
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104 # internal units are eV
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105 Emax *= 1e12
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106 Emin *= 1e12
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107 EminSource *= 1e12
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108
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109 background = {
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110 "Franceschini 2017": 12,
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111 "Stecker 2016 lower limit": 10,
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112 "Stecker 2016 upper limit": 11,
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113 "Inoue 2012 Baseline": 3,
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114 "Inoue 2012 lower limit": 4,
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115 "Inoue 2012 upper limit": 5,
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116 }[EBL]
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117
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118 prog = CRbeam(
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119 z=z_start,
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120 nparticles=Npart,
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121 primary=particle_type,
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122 emax=Emax,
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123 emin=Emin,
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124 emin_source=EminSource,
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125 EGMF=EGMF,
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126 lmaxEGMF=lmaxEGMF_Mpc,
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127 background=background,
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128 )
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129 cmd = prog.command
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130 cmd
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131
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132 # Here is one way to call CRbeam without global cache
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133 # prog.run(force_overwrite=False)
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134 # Here we call CRbeam with global cache
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135 # prog.run_cached(overwrite_local_cache=True)
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136 # to clear s3 cache run the following command
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137 # prog.remove_cache()
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138
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139 # To report the progress we will split running CRbeam into 10 parts
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140 n_steps = 10
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141 # Initialize multistep simulation
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142 data_exists = not prog.start_multistage_run(
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143 overwrite_local_cache=True, n_steps=n_steps
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144 )
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145 proceed = not data_exists
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146
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147 if proceed:
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148 for step in range(n_steps):
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149 pr.report_progress(
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150 stage="Running Simulation", progress=100 * step // n_steps
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151 )
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152 proceed = prog.simulation_step()
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153 # todo: report progress using rest API
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154 pr.report_progress(stage="Running Simulation", progress=100)
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155
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156 assert not proceed, "must be completed before this cell"
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157 if not data_exists:
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158 prog.end_multistep_run()
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159
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160 def adjust_weights(mc_file, power):
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161 # converting weights to mimic required injection spectrum power
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162 header = ""
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163 with open(mc_file, "rt") as lines:
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164 for line in lines:
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165 if len(line) > 0 and line[0] == "#":
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166 header += line[1:].strip() + "\n"
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167 else:
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168 break
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169 weight_col = 2
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170 E_src_col = 12
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171 data = np.loadtxt(mc_file)
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172 weight = data[:, weight_col - 1]
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173 E_src = data[:, E_src_col - 1]
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174 orig_power = (
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175 prog.power_law
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176 ) # CRBeam is always called with fixed power=1 to optimize cache usage
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177 weight *= np.power(E_src / Emax, -(power - orig_power))
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178 output_file = f"{mc_file}_p{power}"
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179 np.savetxt(output_file, data, header=header.strip(), fmt="%.6g")
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180 return output_file
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181
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182 # this code will not execute program since files already exist on server
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183 # prog.run(force_overwrite=False)
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184
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185 # one can upload cache explicitely by call
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186 # prog.upload_cache()
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187
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188 pr.report_progress(stage="Building Plots and Tables", progress=0)
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189
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190 print(prog.output_path)
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191 get_ipython().system("ls {prog.output_path}") # noqa: F821
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192
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193 mc_file = prog.output_path + "/photon"
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194
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195 # how the data looks like
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196 get_ipython().system("cat {mc_file} | awk 'NR<=5'") # noqa: F821
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197
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198 if Emax != EminSource:
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199 mc_file = adjust_weights(mc_file, Gamma)
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200
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201 # how the data looks like
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202 get_ipython().system("cat {mc_file} | awk 'NR<=5'") # noqa: F821
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203
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204 subprocess.run(
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205 [
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206 "bash",
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207 os.path.join(os.environ.get("BASEDIR", os.getcwd()), "makeSpecE2.sh"),
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208 mc_file,
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209 ]
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210 )
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211
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212 # rotating the beam
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213
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214 if EGMF > 0:
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215 from mc_rotate import mc_rotate
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216
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217 mc_rotated_file = mc_rotate(
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218 mc_file, jet_half_size, jet_direction, psf_deg=psf
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219 )
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220 else:
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221 mc_rotated_file = mc_file
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222 mc_rotated_file
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223
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224 subprocess.run(
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225 [
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226 "bash",
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227 os.path.join(os.environ.get("BASEDIR", os.getcwd()), "makeSpecE2.sh"),
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228 mc_rotated_file,
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229 ]
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230 )
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231
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232 # how the rotated data looks like
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233 get_ipython().system("cat {mc_rotated_file} | awk 'NR<=5'") # noqa: F821
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234
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235 # reading the source distance in Mpc from the data file
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236 T_Mpc = lc.get_distance_Mpc(mc_file)
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237 T_Mpc
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238
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239 # building the spectrum figure for total flux
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240
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241 spec_file = mc_file + ".spec"
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242 spec_fig = plot_spec(
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243 spec_file, title="spectrum", ext="png", show=False, logscale=True
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244 )
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245 spec_image = PictureProduct.from_file(spec_fig)
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246
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247 # building the spectrum figure for the flux within PSF
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248 spec_rotated_file = mc_rotated_file + ".spec"
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249 spec_rotated_fig = plot_spec(
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250 spec_rotated_file,
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251 title="spectrum",
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252 Emin=Emin,
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253 Emax=Emax,
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254 ext="png",
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255 show=False,
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256 logscale=True,
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257 )
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258 spec_rotated_image = PictureProduct.from_file(spec_rotated_fig)
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259
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260 spec_rotated_file
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261
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262 lc_params = dict(
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263 logscale=True,
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264 max_t=-99, # 8760000,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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265 n_points=30,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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266 psf=psf,
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267 min_n_particles=10,
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268 cut_0=True,
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269 )
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270
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271 # building the light curve figure
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272 if EGMF > 0:
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273 light_curve_fig = lc.make_plot(mc_rotated_file, **lc_params)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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274 light_curve_image = PictureProduct.from_file(light_curve_fig)
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275 else:
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276 # to avoid possible problems with absent figure
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277 light_curve_image = PictureProduct.from_file(spec_fig)
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278
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279 l_curve = None
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280 if EGMF > 0:
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281 delay, weights = lc.get_counts(mc_rotated_file, **lc_params)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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282 t, f, N = lc.light_curve(delay, weights, **lc_params)
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283 l_curve = LightCurveDataProduct.from_arrays(
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284 times=t * 3600.0, # t is in hours
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285 fluxes=f,
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286 errors=f / np.sqrt(N),
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287 time_format="unix",
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288 )
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289
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290 def convert_to_ICRS(phi: np.array, theta: np.array, source: SkyCoord):
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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291 # prime system has z-axes pointing the source centered at observer
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292 # it is obtained by rotation of source system by 180 degrees about x-axis
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293 # prime system coords have suffix "prime" (')
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294 # icrs system coords has empty suffix
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295 # TODO: add param ic_jet_plane_direction: SkyCoord - gives plane which contains jet
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296 # by definition in prime system the jet is in y'-z' plane and z' axes points from the source towards the observer
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297 # for simplicity we will first assume that prime frame is oriented as ICRS frame (use SkyOffsetFrame with rotation=0)
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298
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299 # coordinates of unit direction vector in prime system
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300
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301 # direction of event arrival at prime system
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302 z_prime = np.cos(
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303 theta / 180.0 * np.pi
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304 ) # (-1)*(-1) = 1 (rotating system and tacking oposite vector)
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305 r_xy_prime = np.sin(theta / 180.0 * np.pi)
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306 x_prime = -r_xy_prime * np.cos(
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307 phi / 180.0 * np.pi
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308 ) # (1)*(-1) = -1 (rotating system and tacking oposite vector)
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309 y_prime = r_xy_prime * np.sin(
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310 phi / 180.0 * np.pi
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311 ) # (-1)*(-1) = 1 (rotating system and tacking oposite vector)
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312
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313 print("x',y',z' =", x_prime, y_prime, z_prime)
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314
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315 # angle between z and z' axes
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316 delta1 = 90 * u.deg - source.dec
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317
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318 print("source:", source.cartesian)
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319 print("delta1 = ", delta1)
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320
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321 # rotating about y-axes
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322
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323 x1 = x_prime * np.cos(delta1) + z_prime * np.sin(delta1)
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324 y1 = y_prime
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325 z1 = -x_prime * np.sin(delta1) + z_prime * np.cos(delta1)
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326
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327 print("step 1: x,y,z =", x1, y1, z1)
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328
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329 # rotation to -RA about z axis
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330 delta2 = source.ra
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331 x = x1 * np.cos(delta2) - y1 * np.sin(delta2)
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332 y = x1 * np.sin(delta2) + y1 * np.cos(delta2)
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333 z = z1
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334
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335 print("x,y,z =", x, y, z)
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336
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337 event_coords = SkyCoord(
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338 x=x, y=y, z=z, frame="icrs", representation_type="cartesian"
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339 ).spherical
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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340 # print(event_coords.spherical)
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341 return event_coords
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342
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343 def LoadCubeTemplate(
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344 mc_file: str,
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345 source: SkyCoord,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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346 Emax=1e15,
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347 Emin=1e9,
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diff changeset
348 bins_per_decade=20,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
349 binsz=0.02,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
350 theta_mult=1,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
351 sec_component_mult=1,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
352 remove_straight=False,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
353 symmetric_split=0,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
354 ):
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
355 pass
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
356
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
357 mc_data = np.loadtxt(mc_file)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
358 E = mc_data[:, 0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
359 print(f"dataset energy: {np.min(E)} <= E/eV <= {np.max(E)}")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
360 Theta = mc_data[:, 2] * theta_mult # theta_mult is used for debug only
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
361 print(f"dataset Theta: {np.min(Theta)} <= Theta <= {np.max(Theta)}")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
362 # idx = np.where((E >= Emin) & (E<=Emax) & (Theta<theta_max))[0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
363 print(f"Filters: {Emin} <= E/eV <= {Emax}")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
364 condition = (E >= Emin) & (E <= Emax)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
365 if remove_straight:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
366 condition &= Theta > 0
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
367
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
368 idx = np.where(condition)[0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
369
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
370 print("filtered dataset length:", len(idx))
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
371
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
372 E = E[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
373 Theta = Theta[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
374 w = mc_data[:, 1][idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
375 Phi = mc_data[:, 3][idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
376 # t = mc_data[:,5][idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
377 # t *= time_scale_hours
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
378 if sec_component_mult != 1: # sec_component_mult is used for debug only
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
379 print("WARNING: Sec component multiplicity:", sec_component_mult)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
380 w[Theta > 0] *= sec_component_mult
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
381
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
382 if len(idx) > 0:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
383 # print(f'{np.min(t)} <= t/h <= {np.max(t)}')
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
384 print(f"{np.min(E)} <= E <= {np.max(E)}")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
385
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
386 energy_axis_name = "energy_true"
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
387
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
388 energy_axis = MapAxis.from_energy_bounds(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
389 Emin * u.eV,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
390 Emax * u.eV,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
391 nbin=bins_per_decade,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
392 name=energy_axis_name,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
393 per_decade=True,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
394 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
395
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
396 m_cube = Map.create(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
397 binsz=binsz,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
398 width=(window_size_RA * u.deg, window_size_DEC * u.deg),
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
399 frame="icrs",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
400 axes=[energy_axis],
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
401 skydir=SkyCoord(source),
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
402 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
403
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
404 print(m_cube.geom)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
405
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
406 if len(idx) > 0:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
407 if symmetric_split > 1:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
408 Theta = np.repeat(Theta, symmetric_split)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
409 E = np.repeat(E, symmetric_split)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
410 w = np.repeat(w, symmetric_split) / symmetric_split
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
411 Phi = np.random.random(len(Theta)) * 360
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
412
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
413 sc = convert_to_ICRS(Phi, Theta, source)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
414 m_cube.fill_by_coord(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
415 {"lat": sc.lat, "lon": sc.lon, energy_axis_name: E * u.eV},
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
416 weights=w,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
417 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
418
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
419 return m_cube
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
420
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
421 def LoadTemplate4D(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
422 mc_file: str,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
423 source: SkyCoord,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
424 redshift,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
425 Emax=1e15,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
426 Emin=1e9,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
427 bins_per_decade=20,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
428 binsz=0.02,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
429 theta_mult=1,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
430 max_time_quantile=1.0,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
431 n_time_bins=100,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
432 symmetric_split=0,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
433 ):
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
434 from astropy.cosmology import FlatLambdaCDM
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
435
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
436 cosmo = FlatLambdaCDM(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
437 H0=67.8 * u.km / u.s / u.Mpc, Tcmb0=2.725 * u.K, Om0=(1 - 0.692)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
438 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
439 time_scale_hours = float(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
440 ((cosmo.age(0) - cosmo.age(z_start)) / u.h).decompose()
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
441 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
442
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
443 mc_data = np.loadtxt(mc_file)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
444 E = mc_data[:, 0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
445
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
446 print("dataset length:", len(mc_data))
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
447 print(f"dataset energy: {np.min(E)} <= E/eV <= {np.max(E)}")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
448 Theta = mc_data[:, 2] * theta_mult # theta_mult is used for debug only
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
449 print(f"dataset Theta: {np.min(Theta)} <= Theta <= {np.max(Theta)}")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
450 # idx = np.where((E >= Emin) & (E<=Emax) & (Theta<theta_max))[0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
451
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
452 idx = np.where((E >= Emin) & (E <= Emax))[0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
453
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
454 print(f"Filters: {Emin} <= E/eV <= {Emax}")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
455 print("filtered dataset length:", len(idx))
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
456
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
457 E = E[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
458 Theta = Theta[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
459 w = mc_data[:, 1][idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
460 Phi = mc_data[:, 3][idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
461 t = mc_data[:, 5][idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
462 t *= time_scale_hours
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
463 min_time = np.min(t)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
464 if max_time_quantile >= 1.0:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
465 max_time = np.max(t)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
466 else:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
467 max_time = np.quantile(t, max_time_quantile)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
468
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
469 if max_time == min_time:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
470 max_time = min_time + 1e-10
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
471
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
472 idx = np.where(t <= max_time)[0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
473 print(f"Filters: {Emin} <= E/eV <= {Emax}, t/h <= {max_time}")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
474 print("filtered dataset length:", len(idx))
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
475
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
476 E = E[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
477 Theta = Theta[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
478 w = w[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
479 Phi = Phi[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
480 t = t[idx]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
481
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
482 energy_axis_name = "energy_true"
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
483
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
484 energy_axis = MapAxis.from_energy_bounds(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
485 Emin * u.eV,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
486 Emax * u.eV,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
487 nbin=bins_per_decade,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
488 name=energy_axis_name,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
489 per_decade=True,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
490 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
491
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
492 from astropy.time import Time
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
493
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
494 reference_time = Time(0, format="unix")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
495
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
496 delta = max_time - min_time
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
497 (min_time + delta * np.linspace(0, 1, n_time_bins + 1)) * u.h
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
498 # time_axis = TimeMapAxis.from_time_edges(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
499 # time_min=time_edges[:-1],
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
500 # time_max=time_edges[1:],
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
501 # interp="lin",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
502 # unit=u.h,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
503 # name='time',
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
504 # reference_time=reference_time
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
505 # )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
506
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
507 time_axis = MapAxis.from_bounds(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
508 min_time, max_time, n_time_bins, name="time", unit=u.h
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
509 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
510
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
511 # time_axis = TimeMapAxis(time_edges[:-1], time_edges[1:], reference_time, name='time', interp='lin')
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
512
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
513 # time_axis = TimeMapAxis.from_time_bounds(min_time, max_time, n_time_bins, unit=u.h, name='time')
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
514
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
515 map4d = Map.create(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
516 binsz=binsz,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
517 width=(window_size_RA * u.deg, window_size_DEC * u.deg),
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
518 frame="icrs",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
519 axes=[energy_axis, time_axis],
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
520 skydir=SkyCoord(source),
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
521 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
522
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
523 print(map4d.geom)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
524
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
525 if len(idx) > 0:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
526 if symmetric_split > 1:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
527 Theta = np.repeat(Theta, symmetric_split)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
528 E = np.repeat(E, symmetric_split)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
529 t = np.repeat(t, symmetric_split)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
530 w = np.repeat(w, symmetric_split) / symmetric_split
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
531 Phi = np.random.random(len(Theta)) * 360
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
532
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
533 sc = convert_to_ICRS(Phi, Theta, source)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
534 map4d.fill_by_coord(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
535 {
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
536 "lat": sc.lat,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
537 "lon": sc.lon,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
538 energy_axis_name: E * u.eV,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
539 "time": t * u.h,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
540 },
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
541 weights=w,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
542 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
543
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
544 return map4d
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
545
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
546 bins_per_decade = 20
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
547
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
548 symmetric_split = 0 if jet_direction != 0 else 100
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
549
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
550 map3d = LoadCubeTemplate(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
551 mc_rotated_file,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
552 source=source,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
553 Emin=Emin,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
554 Emax=Emax,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
555 bins_per_decade=bins_per_decade,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
556 symmetric_split=symmetric_split,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
557 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
558
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
559 map3d.write("map3d.fits", overwrite=True)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
560
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
561 map4d = LoadTemplate4D(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
562 mc_rotated_file,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
563 source=source,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
564 redshift=z_start,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
565 Emin=Emin,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
566 Emax=Emax,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
567 bins_per_decade=bins_per_decade,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
568 symmetric_split=symmetric_split,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
569 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
570 map4d.write("map4d.fits", overwrite=True)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
571
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
572 d = np.genfromtxt(spec_file)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
573 ee = d[:, 0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
574 ff = d[:, 1]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
575 ff_err = ff / np.sqrt(d[:, 2])
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
576 plt.errorbar(ee, ff, yerr=ff_err, label="total flux")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
577 d = np.genfromtxt(spec_rotated_file)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
578 ee1 = d[:, 0]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
579 ff1 = d[:, 1]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
580 ff_err1 = ff1 / np.sqrt(d[:, 2])
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
581 plt.errorbar(ee1, ff1, yerr=ff_err1, label="PSF flux")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
582 plt.xscale("log")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
583 plt.yscale("log")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
584 plt.xlabel("Energy, eV")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
585 plt.ylabel("$E^2dN/dE$, arbitrary units")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
586 plt.legend(loc="lower right")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
587 plt.savefig("Spectrum.png", format="png", bbox_inches="tight")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
588
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
589 bin_image = PictureProduct.from_file("Spectrum.png")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
590
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
591 data = [ee, ff, ff_err]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
592 names = ("Energy", "Total_flux", "Total_flux_err")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
593 table = ODAAstropyTable(Table(data, names=names))
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
594 data = [ee, ff, ff_err]
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
595 names = ("Energy", "PSF_flux", "PSF_flux_err")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
596 table1 = ODAAstropyTable(Table(data, names=names))
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
597
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
598 flux_unit = u.eV / u.cm / u.cm / u.s / u.sr
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
599 spec = Spectrum1D(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
600 spectral_axis=ee * u.eV,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
601 flux=ff * flux_unit,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
602 uncertainty=StdDevUncertainty(ff_err),
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
603 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
604 spec.write("spec.fits", overwrite=True)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
605 dp = NumpyDataProduct.from_fits_file("spec.fits")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
606 spec_rotated = Spectrum1D(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
607 spectral_axis=ee1 * u.eV,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
608 flux=ff1 * flux_unit,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
609 uncertainty=StdDevUncertainty(ff_err1),
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
610 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
611 spec_rotated.write("spec_rotated.fits", overwrite=True)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
612 dp_rotated = NumpyDataProduct.from_fits_file("spec_rotated.fits")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
613 map3d = NumpyDataProduct.from_fits_file("map3d.fits")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
614 map4d = NumpyDataProduct.from_fits_file("map4d.fits")
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
615
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
616 pr.report_progress(stage="Building Plots and Tables", progress=100)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
617
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
618 spectrum_png = bin_image # http://odahub.io/ontology#ODAPictureProduct
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
619 light_curve_png = (
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
620 light_curve_image # http://odahub.io/ontology#ODAPictureProduct
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
621 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
622 total_spectrum_table = table # http://odahub.io/ontology#ODAAstropyTable
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
623 psf_spectrum_table = table1 # http://odahub.io/ontology#ODAAstropyTable
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
624 lc_result = l_curve # http://odahub.io/ontology#LightCurve
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
625 spectrum = dp # http://odahub.io/ontology#Spectrum
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
626 spectrum_rotated = dp_rotated # http://odahub.io/ontology#Spectrum
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
627 map3d = map3d # http://odahub.io/ontology#Spectrum
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
628 map4d = map4d # http://odahub.io/ontology#Spectrum
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
629
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
630 # spec_png = spec_image # http://odahub.io/ontology#ODAPictureProduct
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
631 # spec_rotated_png = spec_rotated_image # http://odahub.io/ontology#ODAPictureProduct
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
632
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
633 # output gathering
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
634 _galaxy_meta_data = {}
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
635 _oda_outs = []
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
636 _oda_outs.append(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
637 (
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
638 "out_Generate_figures_spectrum_png",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
639 "spectrum_png_galaxy.output",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
640 spectrum_png,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
641 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
642 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
643 _oda_outs.append(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
644 (
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
645 "out_Generate_figures_light_curve_png",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
646 "light_curve_png_galaxy.output",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
647 light_curve_png,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
648 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
649 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
650 _oda_outs.append(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
651 (
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
652 "out_Generate_figures_total_spectrum_table",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
653 "total_spectrum_table_galaxy.output",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
654 total_spectrum_table,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
655 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
656 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
657 _oda_outs.append(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
658 (
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
659 "out_Generate_figures_psf_spectrum_table",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
660 "psf_spectrum_table_galaxy.output",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
661 psf_spectrum_table,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
662 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
663 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
664 _oda_outs.append(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
665 ("out_Generate_figures_lc_result", "lc_result_galaxy.output", lc_result)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
666 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
667 _oda_outs.append(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
668 ("out_Generate_figures_spectrum", "spectrum_galaxy.output", spectrum)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
669 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
670 _oda_outs.append(
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
671 (
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
672 "out_Generate_figures_spectrum_rotated",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
673 "spectrum_rotated_galaxy.output",
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
674 spectrum_rotated,
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
675 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
676 )
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
677 _oda_outs.append(("out_Generate_figures_map3d", "map3d_galaxy.output", map3d))
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
678 _oda_outs.append(("out_Generate_figures_map4d", "map4d_galaxy.output", map4d))
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
679
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
680 for _outn, _outfn, _outv in _oda_outs:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
681 _galaxy_outfile_name = os.path.join(_galaxy_wd, _outfn)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
682 if isinstance(_outv, str) and os.path.isfile(_outv):
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
683 shutil.move(_outv, _galaxy_outfile_name)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
684 _galaxy_meta_data[_outn] = {"ext": "_sniff_"}
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
685 elif getattr(_outv, "write_fits_file", None):
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
686 _outv.write_fits_file(_galaxy_outfile_name)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
687 _galaxy_meta_data[_outn] = {"ext": "fits"}
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
688 elif getattr(_outv, "write_file", None):
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
689 _outv.write_file(_galaxy_outfile_name)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
690 _galaxy_meta_data[_outn] = {"ext": "_sniff_"}
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
691 else:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
692 with open(_galaxy_outfile_name, "w") as fd:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
693 json.dump(_outv, fd, cls=CustomJSONEncoder)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
694 _galaxy_meta_data[_outn] = {"ext": "json"}
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
695
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
astroteam
parents:
diff changeset
696 with open(os.path.join(_galaxy_wd, "galaxy.json"), "w") as fd:
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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parents:
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697 json.dump(_galaxy_meta_data, fd)
f40d05521dca planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit de01e3c02a26cd6353a6b9b6f8d1be44de8ccd54
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698 print("*** Job finished successfully ***")