Mercurial > repos > astroteam > cta_astro_tool

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planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 4543470805fc78f6cf2604b9d55beb6f06359995
author astroteam
date Fri, 19 Apr 2024 10:06:21 +0000
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2f3e314c3dfa planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 4543470805fc78f6cf2604b9d55beb6f06359995
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1 <tool id="cta_astro_tool" name="CTA" version="0.0.1+galaxy0" profile="23.0">
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2 <requirements>
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3 <requirement type="package" version="6.0">unzip</requirement>
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4 <requirement type="package" version="2.31.0">requests</requirement>
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5 <requirement type="package" version="1.2">gammapy</requirement>
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6 <requirement type="package" version="5.3">astropy</requirement>
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7 <requirement type="package" version="3.8.4">matplotlib</requirement>
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8 <requirement type="package" version="1.11.4">scipy</requirement>
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9 <requirement type="package" version="1.2.15">oda-api</requirement>
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10 <requirement type="package" version="8.22.2">ipython</requirement>
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11 <!--Requirements string 'nb2workflow[cwl,service,rdf,mmoda]>=1.3.30
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12 ' can't be converted automatically. Please add the galaxy/conda requirement manually or modify the requirements file!-->
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13 <requirement type="package" version="7.16.3">nbconvert</requirement>
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14 </requirements>
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15 <command detect_errors="exit_code">ipython '$__tool_directory__/${_data_product._selector}.py'</command>
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16 <configfiles>
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17 <inputs name="inputs" filename="inputs.json" data_style="paths" />
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18 </configfiles>
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19 <inputs>
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20 <conditional name="_data_product">
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21 <param name="_selector" type="select" label="Data Product">
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22 <option value="pre-defined_model" selected="true">pre-defined_model</option>
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23 <option value="model_cube_file" selected="false">model_cube_file</option>
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24 </param>
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25 <when value="pre-defined_model">
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26 <param name="RA" type="float" value="166.113809" label="RA (unit: deg)" />
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27 <param name="DEC" type="float" value="38.208833" label="DEC (unit: deg)" />
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28 <param name="OffAxis_angle" type="float" value="0.78" label="OffAxis_angle (unit: deg)" />
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29 <param name="Texp" type="float" value="1.0" label="Texp (unit: hour)" />
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30 <param name="z" type="float" value="0.03" label="z" />
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31 <param name="F0" type="float" value="1e-11" label="F0" />
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32 <param name="E0" type="float" value="1.0" label="E0 (unit: TeV)" />
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33 <param name="Gamma" type="float" value="2.0" label="Gamma" />
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34 <param name="Radius_spectal_extraction" type="float" value="0.2" label="Radius_spectal_extraction" />
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35 <param name="Radius_sky_image" type="float" value="2.5" label="Radius_sky_image (unit: deg)" />
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36 <param name="Site" type="select" label="Site">
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37 <option value="North" selected="true">North</option>
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38 <option value="South">South</option>
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39 </param>
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40 <param name="Telescope_LST" type="boolean" checked="true" label="Telescope_LST" />
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41 <param name="Telescope_MST" type="boolean" checked="true" label="Telescope_MST" />
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42 <param name="Telescope_SST" type="boolean" label="Telescope_SST" />
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43 </when>
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44 <when value="model_cube_file">
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45 <param name="data_cube" type="data" label="data_cube" format="data" />
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46 <param name="F0" type="float" value="1e-11" label="F0" />
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47 <param name="E0" type="float" value="1.0" label="E0 (unit: TeV)" />
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48 <param name="OffAxis_angle" type="float" value="0.4" label="OffAxis_angle (unit: deg)" />
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49 <param name="Radius_spectal_extraction" type="float" value="0.2" label="Radius_spectal_extraction (unit: deg)" />
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50 <param name="Radius_sky_image" type="float" value="2.5" label="Radius_sky_image (unit: deg)" />
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51 <param name="Site" type="select" label="Site">
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52 <option value="North" selected="true">North</option>
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53 <option value="South">South</option>
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54 </param>
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55 <param name="Telescopes_LST" type="boolean" checked="true" label="Telescopes_LST" />
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56 <param name="Telescopes_MST" type="boolean" checked="true" label="Telescopes_MST" />
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57 <param name="Telescopes_SST" type="boolean" label="Telescopes_SST" />
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58 <param name="Texp" type="float" value="1.0" label="Texp (unit: hour)" />
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59 </when>
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60 </conditional>
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61 </inputs>
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62 <outputs>
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63 <data label="${tool.name} -&gt; pre-defined_model image_png" name="out_pre_defined_model_image_png" format="auto" from_work_dir="image_png_galaxy.output">
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64 <filter>_data_product['_selector'] == 'pre-defined_model'</filter>
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65 </data>
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66 <data label="${tool.name} -&gt; pre-defined_model theta2_png" name="out_pre_defined_model_theta2_png" format="auto" from_work_dir="theta2_png_galaxy.output">
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67 <filter>_data_product['_selector'] == 'pre-defined_model'</filter>
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68 </data>
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69 <data label="${tool.name} -&gt; pre-defined_model spectrum_png" name="out_pre_defined_model_spectrum_png" format="auto" from_work_dir="spectrum_png_galaxy.output">
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70 <filter>_data_product['_selector'] == 'pre-defined_model'</filter>
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71 </data>
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72 <data label="${tool.name} -&gt; pre-defined_model event_list_fits" name="out_pre_defined_model_event_list_fits" format="auto" from_work_dir="event_list_fits_galaxy.output">
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73 <filter>_data_product['_selector'] == 'pre-defined_model'</filter>
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74 </data>
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75 <data label="${tool.name} -&gt; model_cube_file spectrum_png" name="out_model_cube_file_spectrum_png" format="auto" from_work_dir="spectrum_png_galaxy.output">
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76 <filter>_data_product['_selector'] == 'model_cube_file'</filter>
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77 </data>
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78 <data label="${tool.name} -&gt; model_cube_file theta2_png" name="out_model_cube_file_theta2_png" format="auto" from_work_dir="theta2_png_galaxy.output">
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79 <filter>_data_product['_selector'] == 'model_cube_file'</filter>
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80 </data>
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81 <data label="${tool.name} -&gt; model_cube_file image_png" name="out_model_cube_file_image_png" format="auto" from_work_dir="image_png_galaxy.output">
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82 <filter>_data_product['_selector'] == 'model_cube_file'</filter>
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83 </data>
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84 <data label="${tool.name} -&gt; model_cube_file event_list_fits" name="out_model_cube_file_event_list_fits" format="auto" from_work_dir="event_list_fits_galaxy.output">
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85 <filter>_data_product['_selector'] == 'model_cube_file'</filter>
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86 </data>
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87 </outputs>
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88 <tests>
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89 <test expect_num_outputs="4">
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90 <conditional name="_data_product">
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91 <param name="_selector" value="pre-defined_model" />
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92 <param name="RA" value="166.113809" />
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93 <param name="DEC" value="38.208833" />
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94 <param name="OffAxis_angle" value="0.78" />
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95 <param name="Texp" value="1.0" />
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96 <param name="z" value="0.03" />
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97 <param name="F0" value="1e-11" />
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98 <param name="E0" value="1.0" />
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99 <param name="Gamma" value="2.0" />
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100 <param name="Radius_spectal_extraction" value="0.2" />
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101 <param name="Radius_sky_image" value="2.5" />
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102 <param name="Site" value="North" />
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103 <param name="Telescope_LST" value="True" />
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104 <param name="Telescope_MST" value="True" />
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105 <param name="Telescope_SST" value="False" />
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106 </conditional>
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107 <assert_stdout>
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108 <has_text text="*** Job finished successfully ***" />
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109 </assert_stdout>
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110 </test>
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111 <test expect_num_outputs="4">
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112 <conditional name="_data_product">
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113 <param name="_selector" value="model_cube_file" />
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114 <param name="data_cube" location="https://gitlab.renkulab.io/astronomy/mmoda/cta/-/raw/b3f69b091ce942c05ad035220501ea078d54de26/3d.fits" />
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115 <param name="F0" value="1e-11" />
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116 <param name="E0" value="1.0" />
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117 <param name="OffAxis_angle" value="0.4" />
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118 <param name="Radius_spectal_extraction" value="0.2" />
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119 <param name="Radius_sky_image" value="2.5" />
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120 <param name="Site" value="North" />
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121 <param name="Telescopes_LST" value="True" />
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122 <param name="Telescopes_MST" value="True" />
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123 <param name="Telescopes_SST" value="False" />
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124 <param name="Texp" value="1.0" />
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125 </conditional>
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126 <assert_stdout>
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127 <has_text text="*** Job finished successfully ***" />
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128 </assert_stdout>
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129 </test>
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130 </tests>
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131 <help>This service provides simulaiton of observations with `Cherenkov
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132 Telescope Array (CTA) &lt;https://www.cta-observatory.org/&gt;`__ observatory
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133 (now in construction), based on the Instrument Response Funcitons (IRF)
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134 from Monte-Carlo Production 5: |DOI|. The simulation is done using
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135 `Gammapy &lt;https://gammapy.org/&gt;`__ package.
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136
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137 Two possibilities for defining the sky model are available:
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138 ``Simulate_pointing_using_pre-defined_model`` and
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139 ``Simulate_pointing_using_model_cube_file``. The &#8220;pre-defined model&#8221;
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140 option provides a possibility to simulate a source at sky position
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141 ``RA``, ``DEC``, with a power-law spectrum,
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142 ``dN/dE=F0 (E/E0)^{-\Gamma}``, considering also the effect of absorption
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143 on the Extragalactic Backgorund Light (EBL, based on `Franceschini et
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144 al.&#160;(2017) &lt;https://arxiv.org/abs/1705.10256&gt;`__ model. In the &#8220;model
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145 cube file&#8221; approach, the sky model is loaded from a datacube file (to be
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146 uploaded from an URL to be given in the parameter box). The model cube
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147 describes source counts as a function of ``RA``, ``DEC`` and energy
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148 ``E``. Hence, both the source position on the sky and the model source
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149 spectrum are encoded directly in the data cube.
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150
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151 Parameters that can be adjusted are the source position (``RA``,
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152 ``DEC``), the off-axis angle in the telescope field-of-view, ``R_s``,
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153 Radius of the sky image around the source position, ``Radius`` (used in
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154 the image preview), the exposure time in hours, ``Texp``, source
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155 redshift ``z``, the powerlaw flux normalisation ``F0`` and the reference
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156 energy of normalisation ``E0`` (in TeV), the slope of the powerlaw
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157 spectrum ``Gamma``, radius of the spectral extraction region ``R_s``
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158 used in the count-spectrum preview.
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159
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160 For the sources visible from both South and North CTA sites, it is
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161 possible to choose between ``South`` and ``North`` sites. It is also
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162 possible to simulate observations with different CTA sub-arrays: Large
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163 Size Telescopes (LST), Medium Size Telescopes (MST), Small Size
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164 Telescopes (SST). Note that in the &#8220;Production 5&#8221; Monte-Carlo
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165 simulations of the telescope responses it was assumed that the Northern
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166 site will host only LST and MST sub-arrays (no SST available), while the
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167 Southern site will have MST and SST sub-arrays (no LST available).
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168
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169 Four data products are generated: the Data Level 3 (DL3) event list (a
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170 FITS file), a sky image, a &#8220;theta-square plot&#8221; showsing distribution of
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171 gamma-like events around the the source position, and the count-spectrum
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172 showing the excess counts as a funciton of energy. The image, spectrum
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173 and theta-square plot are for &#8220;preview&#8221; of the event set, further
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174 analysis of the simulated events can be done with deticated imaging and
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175 spectral analysis tools.
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176
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177 .. |DOI| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.5499840.svg
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178 :target: https://doi.org/10.5281/zenodo.5499840
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179 </help>
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180 <citations>
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181 <citation type="doi">10.1007/s10686-011-9247-0</citation>
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182 </citations>
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183 </tool>