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planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 5b1251e9c9cdff7f825bfcfebdfdb12714c13d8f
author astroteam
date Wed, 13 Aug 2025 19:10:53 +0000
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1 <tool id="grb_detection_astro_tool" name="GRB detection" version="0.0.1+galaxy0" profile="24.0">
2 <requirements>
3 <requirement type="package" version="1.26.4">numpy</requirement>
4 <requirement type="package" version="6.1.4">astropy</requirement>
5 <requirement type="package" version="3.9.4">matplotlib</requirement>
6 <requirement type="package" version="1.2.41">oda-api</requirement>
7 <requirement type="package" version="3.12.11">python</requirement>
8 <requirement type="package" version="9.4.0">ipython</requirement>
9 <requirement type="package" version="7.16.6">nbconvert</requirement>
10 <requirement type="package" version="5.10.4">nbformat</requirement>
11 <requirement type="package" version="0.3.4">gcn-kafka</requirement>
12 <requirement type="package" version="0.14.2">xmltodict</requirement>
13 <requirement type="package" version="0.11.1">hop-client</requirement>
14 <requirement type="package" version="2.4.0">ligo.skymap</requirement>
15 </requirements>
16 <command detect_errors="exit_code">python '$__tool_directory__/detectgrb.py'</command>
17 <environment_variables>
18 <environment_variable name="BASEDIR">$__tool_directory__</environment_variable>
19 <environment_variable name="GALAXY_TOOL_DIR">$__tool_directory__</environment_variable>
20 </environment_variables>
21 <configfiles>
22 <inputs name="inputs" filename="inputs.json" data_style="paths" />
23 </configfiles>
24 <inputs>
25 <param name="T1" type="text" value="2023-01-16T04:53:33.9" label="T1" optional="false" />
26 <param name="T2" type="text" value="2023-01-16T04:55:33.9" label="T2" optional="false" />
27 <param name="detection_time_scales" type="text" value="1,10" label="detection_time_scales" optional="false" />
28 <param name="lc_time_scale" type="float" value="0.1" label="lc_time_scale" optional="false" />
29 <param name="background_age" type="float" value="10" label="background_age (unit: s)" optional="false" />
30 <param name="min_sn" type="integer" value="5" label="min_sn" optional="false" />
31 </inputs>
32 <outputs>
33 <data label="${tool.name} -&gt; detectgrb lc" name="out_detectgrb_lc" format="auto" from_work_dir="lc_galaxy.output" />
34 <data label="${tool.name} -&gt; detectgrb detection_comment" name="out_detectgrb_detection_comment" format="auto" from_work_dir="detection_comment_galaxy.output" />
35 <data label="${tool.name} -&gt; detectgrb image_output" name="out_detectgrb_image_output" format="auto" from_work_dir="image_output_galaxy.output" />
36 <data label="${tool.name} -&gt; detectgrb image_fits" name="out_detectgrb_image_fits" format="auto" from_work_dir="image_fits_galaxy.output" />
37 </outputs>
38 <tests>
39 <test expect_num_outputs="4">
40 <param name="T1" value="2023-01-16T04:53:33.9" />
41 <param name="T2" value="2023-01-16T04:55:33.9" />
42 <param name="detection_time_scales" value="1,10" />
43 <param name="lc_time_scale" value="0.1" />
44 <param name="background_age" value="10" />
45 <param name="min_sn" value="5" />
46 <assert_stdout>
47 <has_text text="*** Job finished successfully ***" />
48 </assert_stdout>
49 </test>
50 </tests>
51 <help>This service provides simple detection process for a gamma-ray burst in
52 SPI-ACS data.
53
54 It queries MMODA platform to get SPI-ACS lightcurve in the interval
55 between ``T1`` and ``T2`` and detects GRB as a peak above the background
56 (calculated in the window of the ``background_age`` width) with given
57 minimal S/N ratio. The detection is performed in the rescaled lightcurve
58 (scales given as comma-separated list).
59 </help>
60 <citations>
61 <citation type="bibtex">@article{Neronov_2021,
62 title = {Online data analysis system of the INTEGRAL telescope},
63 volume = {651},
64 ISSN = {1432-0746},
65 url = {http://dx.doi.org/10.1051/0004-6361/202037850},
66 DOI = {10.1051/0004-6361/202037850},
67 journal = {Astronomy &amp;amp; Astrophysics},
68 publisher = {EDP Sciences},
69 author = {Neronov, A. and Savchenko, V. and Tramacere, A. and Meharga, M. and Ferrigno, C. and Paltani, S.},
70 year = {2021},
71 month = {jul},
72 pages = {A97}
73 }</citation>
74 </citations>
75 </tool>