Mercurial > repos > astroteam > hess_astro_tool

annotate hess_astro_tool.xml @ 1:593c4b45eda5 draft default tip

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planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
author astroteam
date Thu, 18 Apr 2024 09:26:15 +0000
parents 02e4bb4fa10c
children
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593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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1 <tool id="hess_astro_tool" name="HESS" version="0.0.2+galaxy0" profile="23.0">
0
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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2 <requirements>
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3 <requirement type="package" version="8.22.2">ipython</requirement>
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4 <requirement type="package" version="5.3.4">astropy</requirement>
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5 <requirement type="package" version="1.11.4">scipy</requirement>
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6 <requirement type="package" version="1.10.14">pydantic</requirement>
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7 <requirement type="package" version="4.66.2">tqdm</requirement>
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8 <requirement type="package" version="1.1">gammapy</requirement>
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9 <requirement type="package" version="3.8.4">matplotlib</requirement>
593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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10 <requirement type="package" version="1.2.15">oda-api</requirement>
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02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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11 <!--Requirements string 'nb2workflow[cwl,service,rdf,mmoda]>=1.3.30
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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12 ' can't be converted automatically. Please add the galaxy/conda requirement manually or modify the requirements file!-->
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593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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13 <requirement type="package" version="7.16.3">nbconvert</requirement>
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14 <requirement type="package" version="1.21.4">wget</requirement>
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15 </requirements>
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16 <command detect_errors="exit_code">ipython '$__tool_directory__/${_data_product._selector}.py'</command>
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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17 <configfiles>
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18 <inputs name="inputs" filename="inputs.json" data_style="paths" />
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19 </configfiles>
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20 <inputs>
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21 <conditional name="_data_product">
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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22 <param name="_selector" type="select" label="Data Product">
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23 <option value="Image" selected="true">Image</option>
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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24 <option value="Spectrum" selected="false">Spectrum</option>
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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25 <option value="Lightcurve" selected="false">Lightcurve</option>
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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26 </param>
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27 <when value="Image">
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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28 <param name="src_name" type="text" value="Crab" label="src_name" />
1
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29 <param name="RA" type="float" value="83.6287" label="RA (unit: deg)" />
593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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30 <param name="DEC" type="float" value="22.0147" label="DEC (unit: deg)" />
0
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31 <param name="T1" type="text" value="2000-10-09T13:16:00.0" label="T1" />
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32 <param name="T2" type="text" value="2022-10-10T13:16:00.0" label="T2" />
1
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33 <param name="Radius" type="float" value="1.0" label="Radius (unit: deg)" />
593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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34 <param name="pixsize" type="float" value="0.05" label="Pixel size (unit: deg)" />
593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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35 <param name="Emin" type="integer" value="1" label="Emin (unit: TeV)" />
593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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36 <param name="Emax" type="float" value="100.0" label="Emax (unit: TeV)" />
0
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37 </when>
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38 <when value="Spectrum">
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39 <param name="src_name" type="text" value="PKS 2155-304" label="src_name" />
1
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40 <param name="RA" type="float" value="329.716938" label="RA (unit: deg)" />
593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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41 <param name="DEC" type="float" value="-30.225588" label="DEC (unit: deg)" />
0
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42 <param name="T1" type="text" value="2000-10-09T13:16:00.0" label="T1" />
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43 <param name="T2" type="text" value="2022-10-10T13:16:00.0" label="T2" />
1
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44 <param name="Radius" type="float" value="2.5" label="Radius (unit: deg)" />
593c4b45eda5 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2f23ec010eab8d33d2760f061286756e17015af7
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45 <param name="R_s" type="float" value="0.2" label="R_s (unit: deg)" />
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46 <param name="Emin" type="float" value="0.1" label="Emin (unit: TeV)" />
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47 <param name="Emax" type="float" value="100.0" label="Emax (unit: TeV)" />
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48 <param name="NEbins" type="integer" value="30" label="NEbins" />
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49 <param name="Efit_min" type="float" value="0.2" label="Efit_min (unit: TeV)" />
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50 <param name="Efit_max" type="float" value="10.0" label="Efit_max (unit: TeV)" />
0
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51 </when>
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52 <when value="Lightcurve">
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53 <param name="src_name" type="text" value="Crab" label="src_name" />
1
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54 <param name="RA" type="float" value="83.6287" label="RA (unit: deg)" />
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55 <param name="DEC" type="float" value="22.0147" label="DEC (unit: deg)" />
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56 <param name="T1" type="text" value="2004-11-20T13:16:00.0" label="T1" />
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57 <param name="T2" type="text" value="2004-12-20T13:16:00.0" label="T2" />
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58 <param name="Radius" type="float" value="2.5" label="Radius (unit: deg)" />
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59 <param name="R_s" type="float" value="0.2" label="R_s (unit: deg)" />
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60 <param name="Emin" type="integer" value="1" label="Emin (unit: TeV)" />
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61 <param name="Emax" type="float" value="100.0" label="Emax (unit: TeV)" />
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62 <param name="NTbins" type="integer" value="30" label="NTbins" />
0
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63 </when>
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64 </conditional>
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65 </inputs>
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66 <outputs>
1
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67 <data label="${tool.name} -&gt; Image png" name="out_Image_png" format="auto" from_work_dir="png_galaxy.output">
0
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68 <filter>_data_product['_selector'] == 'Image'</filter>
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69 </data>
1
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70 <data label="${tool.name} -&gt; Image fits" name="out_Image_fits" format="auto" from_work_dir="fits_galaxy.output">
0
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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71 <filter>_data_product['_selector'] == 'Image'</filter>
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72 </data>
1
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73 <data label="${tool.name} -&gt; Spectrum png" name="out_Spectrum_png" format="auto" from_work_dir="png_galaxy.output">
0
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74 <filter>_data_product['_selector'] == 'Spectrum'</filter>
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75 </data>
1
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76 <data label="${tool.name} -&gt; Spectrum table_confidence_contour" name="out_Spectrum_table_confidence_contour" format="auto" from_work_dir="table_confidence_contour_galaxy.output">
0
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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77 <filter>_data_product['_selector'] == 'Spectrum'</filter>
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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78 </data>
1
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79 <data label="${tool.name} -&gt; Spectrum table_spectrum" name="out_Spectrum_table_spectrum" format="auto" from_work_dir="table_spectrum_galaxy.output">
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80 <filter>_data_product['_selector'] == 'Spectrum'</filter>
0
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81 </data>
1
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82 <data label="${tool.name} -&gt; Lightcurve png" name="out_Lightcurve_png" format="auto" from_work_dir="png_galaxy.output">
0
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83 <filter>_data_product['_selector'] == 'Lightcurve'</filter>
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84 </data>
1
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85 <data label="${tool.name} -&gt; Lightcurve table" name="out_Lightcurve_table" format="auto" from_work_dir="table_galaxy.output">
0
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86 <filter>_data_product['_selector'] == 'Lightcurve'</filter>
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87 </data>
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88 </outputs>
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89 <tests>
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90 <test expect_num_outputs="2">
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91 <conditional name="_data_product">
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92 <param name="_selector" value="Image" />
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93 <param name="src_name" value="Crab" />
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94 <param name="RA" value="83.6287" />
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95 <param name="DEC" value="22.0147" />
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96 <param name="T1" value="2000-10-09T13:16:00.0" />
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97 <param name="T2" value="2022-10-10T13:16:00.0" />
1
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98 <param name="Radius" value="1.0" />
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99 <param name="pixsize" value="0.05" />
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100 <param name="Emin" value="1" />
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101 <param name="Emax" value="100.0" />
0
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102 </conditional>
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103 <assert_stdout>
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104 <has_text text="*** Job finished successfully ***" />
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105 </assert_stdout>
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106 </test>
1
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107 <test expect_num_outputs="3">
0
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108 <conditional name="_data_product">
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109 <param name="_selector" value="Spectrum" />
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110 <param name="src_name" value="PKS 2155-304" />
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111 <param name="RA" value="329.716938" />
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112 <param name="DEC" value="-30.225588" />
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113 <param name="T1" value="2000-10-09T13:16:00.0" />
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114 <param name="T2" value="2022-10-10T13:16:00.0" />
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115 <param name="Radius" value="2.5" />
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116 <param name="R_s" value="0.2" />
1
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117 <param name="Emin" value="0.1" />
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118 <param name="Emax" value="100.0" />
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119 <param name="NEbins" value="30" />
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120 <param name="Efit_min" value="0.2" />
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121 <param name="Efit_max" value="10.0" />
0
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122 </conditional>
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123 <assert_stdout>
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124 <has_text text="*** Job finished successfully ***" />
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125 </assert_stdout>
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126 </test>
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127 <test expect_num_outputs="2">
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128 <conditional name="_data_product">
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129 <param name="_selector" value="Lightcurve" />
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130 <param name="src_name" value="Crab" />
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131 <param name="RA" value="83.6287" />
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132 <param name="DEC" value="22.0147" />
1
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133 <param name="T1" value="2004-11-20T13:16:00.0" />
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134 <param name="T2" value="2004-12-20T13:16:00.0" />
0
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135 <param name="Radius" value="2.5" />
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136 <param name="R_s" value="0.2" />
1
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137 <param name="Emin" value="1" />
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138 <param name="Emax" value="100.0" />
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139 <param name="NTbins" value="30" />
0
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140 </conditional>
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141 <assert_stdout>
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142 <has_text text="*** Job finished successfully ***" />
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143 </assert_stdout>
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144 </test>
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145 </tests>
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146 <help>This service provides analysis of publicly available sample &#8220;Data Level
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147 3&#8221; (DL3) data of HESS gamma-ray telescope, described by `Hess
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148 Collaboration (2018) &lt;https://arxiv.org/abs/1810.04516&gt;`__. Three types
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149 of data products are generated: sky images, source lightcurves and
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150 spectra.
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151
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152 The sky images are count maps produced by histogramming of the events in
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153 sky coordinates (Right Ascention and Declinaiton), in the energy range
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154 that can be set by adjusting the ``Emin`` and ``Emax`` parameters and in
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155 the time range that can be adjusted setting the ``T1`` (start time) and
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156 ``T2`` (stop time) parameters.
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157
1
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158 For the spectra, the analysis performs histogramming of events in
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159 energy, in the number ``NEbins`` of energy bins homogeneously spaces in
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160 logarithm of energy, beterrn ``Emin`` and ``Emax``. Conversion of the
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161 counts to the physical flux units is done by dividing by the exposure
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162 time and effective area that is extracted from the Instrument Response
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163 Functions (IRF). The result is shown with black data points. This simple
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164 estimate of flux in energy bins does not take into account the event
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165 energy estimation errors.
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166
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167 The source signal is extracted from a circular region of the radius
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168 ``R_s``\ (adjustable parameter) around the source posiiton. The
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169 background estimate is done using the &#8220;wobble&#8221; method, from a position
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170 opposite with respect to the signal extraction region in the camera,
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171 with respect to the center of the telescope field-of-view.
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172
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173 A powerlaw fit to the spectrum is done using forward folding method,
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174 properly taking into account the error of energy estimation. The results
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175 of the spectral fitting include the 68% confidence contour for the
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176 spectral parameters (slope and normalisaiton of the powerlaw spectrum).
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177 The first entry in the &#8220;contour&#8221; table is the best-fit value of the fit.
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178 The energy range of fitting can be adjusted with the ``Efit_min``,
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179 ``Efit_max`` parameters.
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180
0
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181 The lightcurves are produced by hystrogramming of the events in time, in
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182 the number ``NTbins`` of time intervals of equalt time width between
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183 ``T1`` (start time) and ``T2`` (stop time). The events are selected in a
1
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184 desired energy range between ``Emin`` and ``Emax``. The source and
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185 backgorund counts are computed in the same way as for the spectral
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186 fitting. Conversion of the counts to the physical flux units is done by
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187 dividing by the exposure time and effective area that is extracted from
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188 the IRF.
0
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189 </help>
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190 <citations>
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191 <citation type="doi">10.5281/zenodo.1421098</citation>
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192 </citations>
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193 </tool>