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annotate generation/gatk.xsldb.xml @ 0:b80ff7f43ad1 draft default tip

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planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/gatk commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
author avowinkel
date Thu, 24 Sep 2015 12:10:01 -0400
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b80ff7f43ad1 planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/gatk commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
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1 <?xml version="1.0" encoding="UTF-8"?>
b80ff7f43ad1 planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/gatk commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
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2 <analyses>
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3 <analysis>
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4 <name>RealignerTargetCreator</name>
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5 <input_type>bam</input_type>
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6 <tag>rtc</tag>
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7 <macro_file>realigner_target_creator.xml</macro_file>
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8 </analysis>
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9 <analysis>
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10 <name>IndelRealigner</name>
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11 <input_type>bam</input_type>
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12 <tag>ir</tag>
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13 <macro_file>indel_realigner.xml</macro_file>
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14 </analysis>
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15 <analysis>
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16 <name>BaseRecalibrator</name>
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17 <input_type>bam</input_type>
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18 <tag>br</tag>
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19 <macro_file>base_recalibrator.xml</macro_file>
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20 </analysis>
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21 <analysis>
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22 <name>AnalyzeCovariates</name>
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23 <input_type>bam</input_type>
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24 <tag>ac</tag>
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25 <macro_file>analyze_covariates.xml</macro_file>
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26 </analysis>
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27 <analysis>
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28 <name>PrintReads</name>
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29 <input_type>bam</input_type>
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30 <tag>pr</tag>
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31 <macro_file>print_reads.xml</macro_file>
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32 </analysis>
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33 <analysis>
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34 <name>HaplotypeCaller</name>
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35 <input_type>bam</input_type>
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36 <tag>hc</tag>
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37 <macro_file>haplotype_caller.xml</macro_file>
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38 </analysis>
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39 <analysis>
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40 <name>GenotypeGVCFs</name>
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41 <input_type>gvcf</input_type>
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42 <tag>gg</tag>
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43 <macro_file>genotype_gvcfs.xml</macro_file>
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44 </analysis>
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45 <analysis>
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46 <name>CombineGVCFs</name>
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47 <input_type>gvcf</input_type>
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48 <tag>cg</tag>
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49 <macro_file>combine_gvcfs.xml</macro_file>
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50 </analysis>
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51 <analysis>
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52 <name>CombineVariants</name>
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53 <input_type>vcf</input_type>
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54 <tag>cv</tag>
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55 <macro_file>combine_variants.xml</macro_file>
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56 </analysis>
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57 </analyses>