Mercurial > repos > avowinkel > gatk

comparison generation/gatk.xsldb.xml @ 0:b80ff7f43ad1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/gatk commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
author avowinkel
date Thu, 24 Sep 2015 12:10:01 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:b80ff7f43ad1
1 <?xml version="1.0" encoding="UTF-8"?>
2 <analyses>
3 <analysis>
4 <name>RealignerTargetCreator</name>
5 <input_type>bam</input_type>
6 <tag>rtc</tag>
7 <macro_file>realigner_target_creator.xml</macro_file>
8 </analysis>
9 <analysis>
10 <name>IndelRealigner</name>
11 <input_type>bam</input_type>
12 <tag>ir</tag>
13 <macro_file>indel_realigner.xml</macro_file>
14 </analysis>
15 <analysis>
16 <name>BaseRecalibrator</name>
17 <input_type>bam</input_type>
18 <tag>br</tag>
19 <macro_file>base_recalibrator.xml</macro_file>
20 </analysis>
21 <analysis>
22 <name>AnalyzeCovariates</name>
23 <input_type>bam</input_type>
24 <tag>ac</tag>
25 <macro_file>analyze_covariates.xml</macro_file>
26 </analysis>
27 <analysis>
28 <name>PrintReads</name>
29 <input_type>bam</input_type>
30 <tag>pr</tag>
31 <macro_file>print_reads.xml</macro_file>
32 </analysis>
33 <analysis>
34 <name>HaplotypeCaller</name>
35 <input_type>bam</input_type>
36 <tag>hc</tag>
37 <macro_file>haplotype_caller.xml</macro_file>
38 </analysis>
39 <analysis>
40 <name>GenotypeGVCFs</name>
41 <input_type>gvcf</input_type>
42 <tag>gg</tag>
43 <macro_file>genotype_gvcfs.xml</macro_file>
44 </analysis>
45 <analysis>
46 <name>CombineGVCFs</name>
47 <input_type>gvcf</input_type>
48 <tag>cg</tag>
49 <macro_file>combine_gvcfs.xml</macro_file>
50 </analysis>
51 <analysis>
52 <name>CombineVariants</name>
53 <input_type>vcf</input_type>
54 <tag>cv</tag>
55 <macro_file>combine_variants.xml</macro_file>
56 </analysis>
57 </analyses>