Mercurial > repos > avowinkel > package_picard_1_135

changeset 0:865a9088fa2e draft default tip

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author avowinkel
date Mon, 06 Jul 2015 14:40:19 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 22 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jul 06 14:40:19 2015 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="picard" version="1.135">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.135/picard-tools-1.135.zip</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>       
+                </actions>                
+                <action type="set_environment">
+                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases
+        </readme>
+    </package>
+</tool_dependency>