Mercurial > repos > azomics > clustergrammer_flow

annotate js/clustergrammerIPG.js @ 1:c90127c2a1ae draft default tip

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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit e47edffe14c2e8544fe0d00d932090657beae528"
author azomics
date Sun, 27 Jun 2021 22:13:16 +0000
parents fee56ee2f7ac
children
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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1 var Clustergrammer =
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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2 /******/ (function(modules) { // webpackBootstrap
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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3 /******/ // The module cache
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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4 /******/ var installedModules = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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5
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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6 /******/ // The require function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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7 /******/ function __webpack_require__(moduleId) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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9 /******/ // Check if module is in cache
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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10 /******/ if(installedModules[moduleId])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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11 /******/ return installedModules[moduleId].exports;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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13 /******/ // Create a new module (and put it into the cache)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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14 /******/ var module = installedModules[moduleId] = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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15 /******/ exports: {},
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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16 /******/ id: moduleId,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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17 /******/ loaded: false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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18 /******/ };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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20 /******/ // Execute the module function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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21 /******/ modules[moduleId].call(module.exports, module, module.exports, __webpack_require__);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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23 /******/ // Flag the module as loaded
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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24 /******/ module.loaded = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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26 /******/ // Return the exports of the module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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27 /******/ return module.exports;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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28 /******/ }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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31 /******/ // expose the modules object (__webpack_modules__)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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32 /******/ __webpack_require__.m = modules;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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34 /******/ // expose the module cache
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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35 /******/ __webpack_require__.c = installedModules;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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37 /******/ // __webpack_public_path__
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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38 /******/ __webpack_require__.p = "";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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40 /******/ // Load entry module and return exports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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41 /******/ return __webpack_require__(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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42 /******/ })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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43 /************************************************************************/
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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44 /******/ ([
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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45 /* 0 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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46 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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47
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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48 var make_config = __webpack_require__(1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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49 var make_params = __webpack_require__(9);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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50 var make_viz = __webpack_require__(37);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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51 var resize_viz = __webpack_require__(124);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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52 var play_demo = __webpack_require__(165);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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53 var ini_demo = __webpack_require__(205);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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54 var filter_viz_using_nodes = __webpack_require__(208);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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55 var filter_viz_using_names = __webpack_require__(209);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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56 var update_cats = __webpack_require__(210);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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57 var reset_cats = __webpack_require__(211);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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58 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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59 var external_update_view = __webpack_require__(213);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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60 var save_matrix = __webpack_require__(216);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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61 var brush_crop_matrix = __webpack_require__(220);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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62 var run_zoom = __webpack_require__(125);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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63 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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64 var all_reorder = __webpack_require__(115);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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65 var make_matrix_string = __webpack_require__(218);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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66
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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67 // moved d3.slider to src
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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68 d3.slider = __webpack_require__(222);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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69
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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70 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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71
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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72 var awesomplete = __webpack_require__(224);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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73 // getting css from src
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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74 __webpack_require__(225);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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75 __webpack_require__(229);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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76
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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77 /* clustergrammer v1.19.2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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78 * Nicolas Fernandez, Ma'ayan Lab, Icahn School of Medicine at Mount Sinai
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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79 * (c) 2017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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80 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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81 function Clustergrammer(args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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82
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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83 /* Main program
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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84 * ----------------------------------------------------------------------- */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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85 // consume and validate user input
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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86 // build giant config object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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87 // visualize based on config object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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88 // handle user events
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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89
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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90 // consume and validate user arguments, produce configuration object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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91 var config = make_config(args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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92
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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93 var cgm = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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94
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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95 // make visualization parameters using configuration object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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96 cgm.params = make_params(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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97 cgm.config = config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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98
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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99 // set up zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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100 cgm.params.zoom_behavior = d3.behavior.zoom().scaleExtent([1, cgm.params.viz.square_zoom * cgm.params.viz.zoom_ratio.x]).on('zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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101 run_zoom(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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102 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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103
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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104 cgm.params.zoom_behavior.translate([cgm.params.viz.clust.margin.left, cgm.params.viz.clust.margin.top]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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106 if (cgm.params.use_sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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107 var make_sidebar = __webpack_require__(231);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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108 make_sidebar(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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109 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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110
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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111 // make visualization using parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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112 make_viz(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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113
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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114 function external_resize() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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115
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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116 d3.select(cgm.params.viz.viz_svg).style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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118 var wait_time = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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119 if (this.params.viz.run_trans === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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120 wait_time = 2500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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121 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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122
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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123 setTimeout(resize_fun, wait_time, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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124 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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125
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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126 function resize_fun(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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127 resize_viz(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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128 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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130 function run_update_cats(cat_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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131 update_cats(this, cat_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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132 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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134 function zoom_api(pan_dx, pan_dy, fin_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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135 two_translate_zoom(this, pan_dx, pan_dy, fin_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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136 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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137
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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138 function expose_d3_tip_custom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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139 // this allows external modules to have access to d3_tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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140 return d3_tip_custom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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141 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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143 function api_reorder(inst_rc, inst_order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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144 if (inst_order === 'sum') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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145 inst_order = 'rank';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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146 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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147 if (inst_order === 'var') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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148 inst_order = 'rankvar';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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149 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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150 all_reorder(this, inst_order, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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151 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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153 function export_matrix_string() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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154 return make_matrix_string(this.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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155 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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156
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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157 // add more API endpoints
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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158 cgm.update_view = external_update_view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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159 cgm.resize_viz = external_resize;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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160 cgm.play_demo = play_demo;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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161 cgm.ini_demo = ini_demo;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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162 cgm.filter_viz_using_nodes = filter_viz_using_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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163 cgm.filter_viz_using_names = filter_viz_using_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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164 cgm.update_cats = run_update_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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165 cgm.reset_cats = reset_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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166 cgm.zoom = zoom_api;
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167 cgm.save_matrix = save_matrix;
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168 cgm.brush_crop_matrix = brush_crop_matrix;
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169 cgm.d3_tip_custom = expose_d3_tip_custom;
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170 cgm.reorder = api_reorder;
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171 cgm.export_matrix_string = export_matrix_string;
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172
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173 return cgm;
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174 }
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175
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176 module.exports = Clustergrammer;
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177
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178 /***/ },
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179 /* 1 */
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180 /***/ function(module, exports, __webpack_require__) {
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181
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182 var utils = __webpack_require__(2);
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183 var transpose_network = __webpack_require__(3);
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184 var get_available_filters = __webpack_require__(4);
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185 var get_filter_default_state = __webpack_require__(5);
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186 var set_defaults = __webpack_require__(6);
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187 var check_sim_mat = __webpack_require__(7);
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188 var check_nodes_for_categories = __webpack_require__(8);
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189
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190 module.exports = function make_config(args) {
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191
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192 var defaults = set_defaults();
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193
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194 // Mixin defaults with user-defined arguments.
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195 var config = utils.extend(defaults, args);
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196
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197 config.network_data = args.network_data;
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198
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199 var super_string = ': ';
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200
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201 // replace undersores with space in row/col names
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202 _.each(['row', 'col'], function (inst_rc) {
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203
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204 var inst_nodes = config.network_data[inst_rc + '_nodes'];
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205
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206 var has_cats = check_nodes_for_categories(inst_nodes);
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207
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208 inst_nodes.forEach(function (d, i) {
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209
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210 // add index to row_nodes and col_nodes
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211 d[inst_rc + '_index'] = i;
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212
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213 if (has_cats) {
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214 config.super_labels = true;
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215 config.super[inst_rc] = d.name.split(super_string)[0];
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216 d.name = d.name.split(super_string)[1];
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217 }
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218
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219 d.name = String(d.name);
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220
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221 d.name = d.name.replace(/_/g, ' ');
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222 });
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223 });
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224
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225 config.network_data.row_nodes_names = utils.pluck(config.network_data.row_nodes, 'name');
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226 config.network_data.col_nodes_names = utils.pluck(config.network_data.col_nodes, 'name');
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227
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228 config.sim_mat = check_sim_mat(config);
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229
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230 var filters = get_available_filters(config.network_data.views);
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231
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232 var default_states = {};
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233 _.each(_.keys(filters.possible_filters), function (inst_filter) {
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234 var tmp_state = get_filter_default_state(filters.filter_data, inst_filter);
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235
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236 default_states[inst_filter] = tmp_state;
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237 });
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238
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239 // process view
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240 if (_.has(config.network_data, 'views')) {
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241 config.network_data.views.forEach(function (inst_view) {
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242
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243 _.each(_.keys(filters.possible_filters), function (inst_filter) {
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244 if (!_.has(inst_view, inst_filter)) {
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245 inst_view[inst_filter] = default_states[inst_filter];
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246 }
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247 });
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248
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249 var inst_nodes = inst_view.nodes;
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250
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251 // proc row/col nodes names in views
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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252 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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253
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254 var has_cats = check_nodes_for_categories(inst_nodes[inst_rc + '_nodes']);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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255
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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256 inst_nodes[inst_rc + '_nodes'].forEach(function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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258 // add index to row_nodes and col_nodes
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259 d[inst_rc + '_index'] = i;
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260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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261 if (has_cats) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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262 d.name = d.name.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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263 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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265 d.name = String(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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266 d.name = d.name.replace(/_/g, ' ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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267 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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268 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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269 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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270 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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271
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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272 var col_nodes = config.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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273 var row_nodes = config.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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275 // console.log( config.network_data.links[0] )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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276 // console.log( config.network_data.links[1] )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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277 // console.log( config.network_data.links[2] )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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278
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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279 // console.log(_.has(config.network_data,'mat'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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281 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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282 // convert 'mat' to links
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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283 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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284
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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285 if (_.has(config.network_data, 'mat')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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287 var links = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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288 var mat = config.network_data.mat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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289 var inst_link = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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290
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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291 // console.log('found mat')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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292 for (var i = 0; i < mat.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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293 for (var j = 0; j < mat[0].length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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294 // console.log(mat[i][j])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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296 inst_link = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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297 inst_link.source = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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298 inst_link.target = j;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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299 inst_link.value = mat[i][j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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300 links.push(inst_link);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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301 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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302 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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303
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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304 // save to network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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305 config.network_data.links = links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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306 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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308 // add names and instantaneous positions to links
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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309 config.network_data.links.forEach(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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310 d.name = row_nodes[d.source].name + '_' + col_nodes[d.target].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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311 d.row_name = row_nodes[d.source].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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312 d.col_name = col_nodes[d.target].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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313 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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314
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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315 // transpose network if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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316 if (config.transpose) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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317 config.network_data = transpose_network(config.network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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318 var tmp_col_label = args.col_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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319 var tmp_row_label = args.row_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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320 args.row_label = tmp_col_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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321 args.col_label = tmp_row_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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322 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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323
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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324 // super-row/col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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325 if (!utils.is_undefined(args.row_label) && !utils.is_undefined(args.col_label)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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326 config.super_labels = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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327 config.super = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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328 config.super.row = args.row_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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329 config.super.col = args.col_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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330 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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332 // initialize cluster ordering - both rows and columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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333 config.inst_order = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
334 if (!utils.is_undefined(args.order) && utils.is_supported_order(args.order)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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335 config.inst_order.row = args.order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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336 config.inst_order.col = args.order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
337 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
338 config.inst_order.row = 'clust';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
339 config.inst_order.col = 'clust';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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340 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
341
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
342 // set row or column order directly -- note that row/col are swapped
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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343 // !! need to swap row/col orderings
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
344 if (!utils.is_undefined(args.row_order) && utils.is_supported_order(args.row_order)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
345 // !! row and col orderings are swapped, need to fix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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346 config.inst_order.col = args.row_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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348
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
349 if (!utils.is_undefined(args.col_order) && utils.is_supported_order(args.col_order)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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350 // !! row and col orderings are swapped, need to fix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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351 config.inst_order.row = args.col_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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352 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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354 var row_has_group = utils.has(config.network_data.row_nodes[0], 'group');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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355 var col_has_group = utils.has(config.network_data.col_nodes[0], 'group');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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357 config.show_dendrogram = row_has_group || col_has_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
359 if (utils.has(config.network_data.links[0], 'value_orig')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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360 config.keep_orig = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
361 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
362 config.keep_orig = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
363 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
365 return config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
366 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
368 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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369 /* 2 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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370 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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371
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
373 /* Utility functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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374 * ----------------------------------------------------------------------- */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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375 module.exports = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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376 normal_name: function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
377 var inst_name = d.name.replace(/_/g, ' ').split('#')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
378 return inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
379 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
380 is_supported_order: function (order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
381 return order === 'ini' || order === 'clust' || order === 'rank_var' || order === 'rank' || order === 'class' || order == 'alpha';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
382 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
383
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
384 /* Returns whether or not an object has a certain property.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
385 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
386 has: function (obj, key) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
387 return obj != null && hasOwnProperty.call(obj, key);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
388 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
389
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
390 property: function (key) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
391 return function (obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
392 return obj == null ? void 0 : obj[key];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
393 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
394 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
396 // Convenience version of a common use case of `map`: fetching a property.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
397 pluck: function (arr, key) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
398 var self = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
399 // Double check that we have lodash or underscore available
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
400 if (window._) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
401 // Underscore provides a _.pluck function. Use that.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
402 if (typeof _.pluck === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
403 return _.pluck(arr, key);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
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diff changeset
404 } else if (typeof _.map === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
405 // Lodash does not have a pluck function.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
406 // Use _.map with the property function defined above.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
407 return _.map(arr, self.property(key));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
408 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
409 } else if (arr.map && typeof arr.map === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
410 // If lodash or underscore not available, check to see if the native arr.map is available.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
411 // If so, use it with the property function defined above.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
412 return arr.map(self.property(key));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
413 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
414 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
416 /* Returns true if the object is undefined.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
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diff changeset
417 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
418 is_undefined: function (obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
419 return obj === void 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
420 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
421
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
422 /* Mixes two objects in together, overwriting a target with a source.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
423 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
424 extend: function (target, source) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
425 target = target || {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
426 for (var prop in source) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
427 if (typeof source[prop] === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
428 target[prop] = this.extend(target[prop], source[prop]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
429 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
430 target[prop] = source[prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
431 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
432 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
433 return target;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
434 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
435 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
436
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
437 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
438 /* 3 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
439 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
440
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
441 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
442 /* Transpose network.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
443 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
444 module.exports = function (net) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
445 var tnet = {},
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
446 inst_link,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
447 i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
448
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
449 tnet.row_nodes = net.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
450 tnet.col_nodes = net.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
451 tnet.links = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
452
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
453 for (i = 0; i < net.links.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
454 inst_link = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
455 inst_link.source = net.links[i].target;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
456 inst_link.target = net.links[i].source;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
457 inst_link.value = net.links[i].value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
459 // Optional highlight.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
460 if (utils.has(net.links[i], 'highlight')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
461 inst_link.highlight = net.links[i].highlight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
462 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
463 if (utils.has(net.links[i], 'value_up')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
464 inst_link.value_up = net.links[i].value_up;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
465 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
466 if (utils.has(net.links[i], 'value_dn')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
467 inst_link.value_dn = net.links[i].value_dn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
468 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
469 if (utils.has(net.links[i], 'info')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
470 inst_link.info = net.links[i].info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
471 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
472 tnet.links.push(inst_link);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
473 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
474
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
475 return tnet;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
476 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
477
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
478 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
479 /* 4 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
480 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
481
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
482 module.exports = function get_available_filters(views) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
484 var possible_filters = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
485 var filter_data = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
486
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
487 _.each(views, function (inst_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
488 var inst_keys = _.keys(inst_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
490 _.each(inst_keys, function (inst_key) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
492 if (inst_key != 'nodes') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
494 if (!_.has(filter_data, inst_key)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
495 filter_data[inst_key] = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
496 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
497
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
498 filter_data[inst_key].push(inst_view[inst_key]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
499
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
500 filter_data[inst_key] = _.uniq(filter_data[inst_key]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
501 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
502 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
503 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
505 var tmp_filters = _.keys(filter_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
507 _.each(tmp_filters, function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
509 var options = filter_data[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
510 var num_options = options.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
511
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
512 var filter_type = 'categorical';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
513 _.each(options, function (inst_option) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
514 if (typeof inst_option === 'number') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
515 filter_type = 'numerical';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
516 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
517 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
519 if (num_options > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
520 possible_filters[inst_filter] = filter_type;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
521 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
522 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
523
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
524 var filters = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
525 filters.possible_filters = possible_filters;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
526 filters.filter_data = filter_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
527
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
528 return filters;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
529 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
530
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
531 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
532 /* 5 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
533 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
534
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
535 module.exports = function get_filter_default_state(filter_data, filter_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
536
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
537 var default_state = filter_data[filter_type].sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
538 return b - a;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
539 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
540
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
541 default_state = String(default_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
542
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
543 return default_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
544 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
546 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
547 /* 6 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
548 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
549
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
550 module.exports = function set_defaults() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
552 var defaults = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
553 // Label options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
554 row_label_scale: 1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
555 col_label_scale: 1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
556 super_labels: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
557 super: {},
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
558 show_label_tooltips: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
559 show_tile_tooltips: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
560 // matrix options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
561 transpose: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
562 tile_colors: ['#FF0000', '#1C86EE'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
563 bar_colors: ['#FF0000', '#1C86EE'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
564 // value-cat colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
565 // cat_value_colors: ['#2F4F4F', '#8A2BE2'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
566 cat_value_colors: ['#2F4F4F', '#9370DB'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
567 outline_colors: ['orange', 'black'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
568 highlight_color: '#FFFF00',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
569 tile_title: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
570 // Default domain is set to 0: the domain will be set automatically
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
571 input_domain: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
572 opacity_scale: 'linear',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
573 do_zoom: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
574 is_zoom: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
575 is_slider_drag: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
576 is_cropping: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
577 background_color: '#FFFFFF',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
578 super_border_color: '#F5F5F5',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
579 outer_margins: {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
580 top: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
581 bottom: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
582 left: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
583 right: 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
584 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
585 ini_expand: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
586 grey_border_width: 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
587 tile_click_hlight: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
588 super_label_scale: 1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
589 make_tile_tooltip: function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
590 return d.info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
591 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
592 // initialize view, e.g. initialize with row filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
593 ini_view: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
594 // record of requested views
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
595 requested_view: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
596 use_sidebar: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
597 title: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
598 about: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
599 sidebar_width: 160,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
600 sidebar_icons: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
601 row_search_placeholder: 'Row',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
602 buffer_width: 10,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
603 show_sim_mat: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
604 cat_colors: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
605 resize: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
606 clamp_opacity: 0.85,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
607 expand_button: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
608 max_allow_fs: 20,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
609 dendro_filter: { 'row': false, 'col': false },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
610 cat_filter: { 'row': false, 'col': false },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
611 crop_filter_nodes: { 'row': false, 'col': false },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
612 row_tip_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
613 col_tip_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
614 tile_tip_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
615 matrix_update_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
616 cat_update_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
617 dendro_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
618 dendro_click_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
619 new_row_cats: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
620 make_modals: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
621 show_viz_border: false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
622 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
624 return defaults;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
625 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
626
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
627 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
628 /* 7 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
629 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
630
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
631 module.exports = function check_sim_mat(config) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
633 var sim_mat = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
635 var num_rows = config.network_data.row_nodes_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
636 var num_cols = config.network_data.col_nodes_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
637
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
638 if (num_rows == num_cols) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
639
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
640 // the sort here was causing errors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
641 var rows = config.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
642 var cols = config.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
643 sim_mat = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
644
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
645 _.each(rows, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
646 var inst_index = rows.indexOf(inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
647 if (inst_row !== cols[inst_index]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
648 sim_mat = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
649 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
650 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
651 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
653 if (sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
654 config.expand_button = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
655 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
656
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
657 return sim_mat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
658 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
660 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
661 /* 8 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
662 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
663
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
664 module.exports = function check_nodes_for_categories(nodes) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
665
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
666 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
667 var has_cat = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
668
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
669 _.each(nodes, function (inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
670 var inst_name = String(inst_node.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
671 if (inst_name.indexOf(super_string) < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
672 has_cat = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
673 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
674 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
675
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
676 return has_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
677 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
678
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
679 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
680 /* 9 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
681 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
683 var make_network_using_view = __webpack_require__(10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
684 var ini_sidebar_params = __webpack_require__(13);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
685 var make_requested_view = __webpack_require__(14);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
686 var get_available_filters = __webpack_require__(4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
687 var calc_viz_params = __webpack_require__(15);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
688 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
689
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
690 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
691 Params: calculates the size of all the visualization elements in the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
692 clustergram.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
693 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
695 module.exports = function make_params(input_config) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
697 var config = $.extend(true, {}, input_config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
698 var params = config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
700 // keep a copy of inst_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
701 params.inst_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
702 params.inst_nodes.row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
703 params.inst_nodes.col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
705 // when pre-loading the visualization using a view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
706 if (params.ini_view !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
708 var requested_view = params.ini_view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
709
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
710 var filters = get_available_filters(params.network_data.views);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
712 params.viz = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
713 params.viz.possible_filters = filters.possible_filters;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
714 params.viz.filter_data = filters.filter_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
716 requested_view = make_requested_view(params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
717 params.network_data = make_network_using_view(config, params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
719 // save ini_view as requested_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
720 params.requested_view = requested_view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
721 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
723 params = calc_viz_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
725 if (params.use_sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
726 params.sidebar = ini_sidebar_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
727 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
729 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
731 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
732 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
734 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
735 /* 10 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
736 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
737
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
738 var filter_network_using_new_nodes = __webpack_require__(11);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
739 var get_subset_views = __webpack_require__(12);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
741 module.exports = function make_network_using_view(config, params, requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
742
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
743 var orig_views = config.network_data.views;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
745 var is_enr = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
746 if (_.has(orig_views[0], 'enr_score_type')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
747 is_enr = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
748 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
749
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
750 var sub_views = get_subset_views(params, orig_views, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
751
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
752 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
753 // Enrichr specific rules
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
754 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
755 if (is_enr && sub_views.length == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
756 requested_view = { 'N_row_sum': 'all', 'N_col_sum': '10' };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
757 sub_views = get_subset_views(params, orig_views, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
758 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
760 var inst_view = sub_views[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
762 var new_network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
764 // get new_network_data or default back to old_network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
765 if (typeof inst_view !== 'undefined') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
766 var new_nodes = inst_view.nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
767 new_network_data = filter_network_using_new_nodes(config, new_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
768 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
769 new_network_data = config.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
770 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
771
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
772 return new_network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
773 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
775 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
776 /* 11 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
777 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
778
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
779 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
780
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
781 module.exports = function filter_network_using_new_nodes(config, new_nodes) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
783 var links = config.network_data.links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
785 // get new names of rows and cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
786 var row_names = utils.pluck(new_nodes.row_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
787 var col_names = utils.pluck(new_nodes.col_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
789 var new_links = _.filter(links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
790 var inst_row = d.name.split('_')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
791 var inst_col = d.name.split('_')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
792
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
793 var row_index = _.indexOf(row_names, inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
794 var col_index = _.indexOf(col_names, inst_col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
795
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
796 if (row_index > -1 & col_index > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
797 // redefine source and target
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
798 d.source = row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
799 d.target = col_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
800 return d;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
801 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
802 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
804 // set up new_network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
805 var new_network_data = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
806 // rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
807 new_network_data.row_nodes = new_nodes.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
808 new_network_data.row_nodes_names = row_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
809 // cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
810 new_network_data.col_nodes = new_nodes.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
811 new_network_data.col_nodes_names = col_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
812 // links
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
813 new_network_data.links = new_links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
814 // save all links
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
815 new_network_data.all_links = links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
816 // add back all views
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
817 new_network_data.views = config.network_data.views;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
818
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
819 // add cat_colors if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
820 if (_.has(config.network_data, 'cat_colors')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
821 new_network_data.cat_colors = config.network_data.cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
822 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
824 return new_network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
825 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
826
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
827 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
828 /* 12 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
829 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
830
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
831 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
832 var get_filter_default_state = __webpack_require__(5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
833
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
834 module.exports = function get_subset_views(params, views, requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
835
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
836 var inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
837 var found_filter;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
839 var request_filters = _.keys(requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
841 // find a view that matches all of the requested view/filter-attributes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
842 _.each(request_filters, function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
843
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
844 inst_value = requested_view[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
846 // if the value is a number, then convert it to an integer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
847 if (/[^a-z_]/i.test(inst_value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
848 inst_value = parseInt(inst_value, 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
849 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
850
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
851 // only run filtering if any of the views has the filter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
852 found_filter = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
853 _.each(views, function (tmp_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
854 if (utils.has(tmp_view, inst_filter)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
855 found_filter = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
856 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
857 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
859 if (found_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
860 views = _.filter(views, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
861 return d[inst_filter] == inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
862 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
864 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
865
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
866 // remove duplicate complete default states
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
867 var export_views = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
868 var found_default = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
869 var check_default;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
870 var inst_default_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
872 // check if each view is a default state: all filters are at default
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
873 // there can only be one of these
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
874 _.each(views, function (inst_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
876 check_default = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
877
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
878 // check each filter in a view to see if it is in the default state
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
879 _.each(_.keys(params.viz.possible_filters), function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
880
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
881 inst_default_state = get_filter_default_state(params.viz.filter_data, inst_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
883 if (inst_view[inst_filter] != inst_default_state) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
884 check_default = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
885 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
886 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
887
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
888 // found defaule view, only append if you have not already found a default
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
889 if (check_default) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
890 if (found_default === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
891 found_default = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
892 export_views.push(inst_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
893 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
894 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
895 export_views.push(inst_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
896 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
897 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
898
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
899 // if (export_views.length > 1){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
900 // console.log('found more than one view in get_subset_views')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
901 // console.log(requested_view)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
902 // console.log(export_views)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
903 // } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
904 // console.log('found single view in get_subset_views')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
905 // console.log(requested_view)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
906 // console.log(export_views[0])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
907 // console.log('\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
908 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
910 return export_views;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
911 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
912
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
913 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
914 /* 13 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
915 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
916
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
917 module.exports = function ini_sidebar_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
918 var sidebar = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
920 sidebar.wrapper = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
921 // sidebar.wrapper.width = 170;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
922
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
923 sidebar.row_search = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
924 sidebar.row_search.box = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
925 sidebar.row_search.box.height = 34;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
926 sidebar.row_search.box.width = 95;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
927 sidebar.row_search.placeholder = params.row_search_placeholder;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
928 sidebar.row_search.margin_left = 7;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
929
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
930 sidebar.slider = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
931 sidebar.slider.width = params.sidebar_width - 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
932 sidebar.slider.margin_left = 15;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
934 sidebar.key_cat = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
935 sidebar.key_cat.width = params.sidebar_width - 15;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
936 sidebar.key_cat.margin_left = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
937 sidebar.key_cat.max_height = 100;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
938
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
939 sidebar.title = params.title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
940 sidebar.title_margin_left = 7;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
941 sidebar.about = params.about;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
942 sidebar.width = params.sidebar_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
943
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
944 sidebar.buttons = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
945 sidebar.buttons.width = params.sidebar_width - 15;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
946
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
947 sidebar.text = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
948
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
949 sidebar.icons = params.sidebar_icons;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
950 sidebar.icon_margin_left = -5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
951
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
952 return sidebar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
953 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
954
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
955 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
956 /* 14 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
957 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
958
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
959 module.exports = function make_view_request(params, requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
961 // this will add all necessary information to a view request
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
962 // it will grab necessary view information from the sliders
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
963
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
964 // only one component will be changed at a time
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
965 var changed_component = _.keys(requested_view)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
967 // add additional filter information from othe possible filters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
968 _.each(_.keys(params.viz.possible_filters), function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
969
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
970 if (inst_filter != changed_component) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
972 if (!d3.select(params.root + ' .slider_' + inst_filter).empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
973
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
974 var inst_state = d3.select(params.root + ' .slider_' + inst_filter).attr('current_state');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
975
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
976 requested_view[inst_filter] = inst_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
977 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
978 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
979 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
981 return requested_view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
982 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
984 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
985 /* 15 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
986 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
988 var ini_label_params = __webpack_require__(16);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
989 var set_viz_wrapper_size = __webpack_require__(17);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
990 var get_svg_dim = __webpack_require__(19);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
991 var calc_label_params = __webpack_require__(20);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
992 var calc_clust_width = __webpack_require__(21);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
993 var calc_clust_height = __webpack_require__(22);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
994 var calc_val_max = __webpack_require__(23);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
995 var calc_matrix_params = __webpack_require__(24);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
996 var set_zoom_params = __webpack_require__(29);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
997 var calc_default_fs = __webpack_require__(31);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
998 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
999 var get_available_filters = __webpack_require__(4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1000 var make_cat_params = __webpack_require__(32);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1001
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1002 module.exports = function calc_viz_params(params, predefined_cat_colors = true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1003
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1004 params.labels = ini_label_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1005 params.viz = ini_viz_params(params, predefined_cat_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1007 set_viz_wrapper_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1008
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1009 params = get_svg_dim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1010 params.viz = calc_label_params(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1011 params.viz = calc_clust_width(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1012 params.viz = calc_clust_height(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1014 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1015 if (params.viz.clust.dim.width <= params.viz.clust.dim.height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1016 params.viz.clust.dim.height = params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1017 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1018 params.viz.clust.dim.width = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1019 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1020 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1022 params = calc_val_max(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1023 params = calc_matrix_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1024 params = set_zoom_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1025 params = calc_default_fs(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1027 function ini_viz_params(params, predefined_cat_colors = true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1028
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1029 var viz = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1031 viz.root = params.root;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1033 viz.root_tips = params.root.replace('#', '.') + '_' + 'd3-tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1034
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1035 viz.viz_wrapper = params.root + ' .viz_wrapper';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1036 viz.do_zoom = params.do_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1037 viz.background_color = params.background_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1038 viz.super_border_color = params.super_border_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1039 viz.outer_margins = params.outer_margins;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1040 viz.is_expand = params.ini_expand;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1041 viz.grey_border_width = params.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1042 viz.show_dendrogram = params.show_dendrogram;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1043 viz.tile_click_hlight = params.tile_click_hlight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1044 viz.inst_order = params.inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1045 viz.expand_button = params.expand_button;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1046 viz.sim_mat = params.sim_mat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1047 viz.dendro_filter = params.dendro_filter;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1048 viz.cat_filter = params.cat_filter;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1049 viz.cat_value_colors = params.cat_value_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1050
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1051 viz.viz_svg = viz.viz_wrapper + ' .viz_svg';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1053 viz.zoom_element = viz.viz_wrapper + ' .viz_svg';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1054
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1055 viz.uni_duration = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1056 // extra space below the clustergram (was 5)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1057 // will increase this to accomidate dendro slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1058 viz.bottom_space = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1059 viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1060 viz.duration = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1061
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1062 viz.resize = params.resize;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1063 if (utils.has(params, 'size')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1064 viz.fixed_size = params.size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1065 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1066 viz.fixed_size = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1067 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1069 // width is 1 over this value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1070 viz.border_fraction = 65;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1071 viz.uni_margin = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1072
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1073 viz.super_labels = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1074 viz.super_labels.margin = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1075 viz.super_labels.dim = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1076 viz.super_labels.margin.left = viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1077 viz.super_labels.margin.top = viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1078 viz.super_labels.dim.width = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1079 if (params.labels.super_labels) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1080 viz.super_labels.dim.width = 15 * params.labels.super_label_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1081 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1082
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1083 viz.triangle_opacity = 0.6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1084
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1085 viz.norm_labels = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1086 viz.norm_labels.width = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1087
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1088 viz.dendro_room = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1089 if (viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1090 viz.dendro_room.symbol_width = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1091 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1092 viz.dendro_room.symbol_width = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1093 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1095 viz.cat_colors = params.cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1097 // console.log('ini_viz_params -> make_cat_params')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1098 // console.log('predefined_cat_colors outside function ' + String(predefined_cat_colors))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1100 viz = make_cat_params(params, viz, predefined_cat_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1101
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1102 if (_.has(params, 'group_level') == false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1103 if (viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1104 params.group_level = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1105 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1106 params.group_level.row = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1107 params.group_level.col = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1108 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1110 viz.dendro_opacity = 0.35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1111
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1112 viz.spillover_col_slant = viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1113
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1114 var filters = get_available_filters(params.network_data.views);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1115
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1116 viz.possible_filters = filters.possible_filters;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1117 viz.filter_data = filters.filter_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1119 viz.viz_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1121 // nodes that should be visible based on visible area
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1122 viz.viz_nodes.row = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1123 viz.viz_nodes.col = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1124
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1125 // nodes that are currently visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1126 viz.viz_nodes.curr_row = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1127 viz.viz_nodes.curr_col = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1128
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1129 // correct panning in x direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1130 viz.x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1131
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1132 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1133 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1135 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1136 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1137
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1138 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1139 /* 16 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1140 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1142 module.exports = function ini_label_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1144 var labels = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1145 labels.super_label_scale = params.super_label_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1146 labels.super_labels = params.super_labels;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1147 labels.super_label_fs = 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1148
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1149 if (labels.super_labels) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1150 labels.super = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1151 labels.super.row = params.super.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1152 labels.super.col = params.super.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1153 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1155 labels.show_label_tooltips = params.show_label_tooltips;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1156
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1157 labels.row_max_char = _.max(params.network_data.row_nodes, function (inst) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1158 return inst.name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1159 }).name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1161 labels.col_max_char = _.max(params.network_data.col_nodes, function (inst) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1162 return inst.name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1163 }).name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1165 labels.max_allow_fs = params.max_allow_fs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1167 return labels;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1168 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1170 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1171 /* 17 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1172 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1174 var calc_viz_dimensions = __webpack_require__(18);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1176 module.exports = function set_viz_wrapper_size(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1178 // Create wrapper around SVG visualization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1179 if (d3.select(params.root + ' .viz_wrapper').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1180
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1181 d3.select(params.root).append('div').classed('sidebar_wrapper', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1182
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1183 d3.select(params.root).append('div').classed('viz_wrapper', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1184 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1185
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1186 var cont_dim = calc_viz_dimensions(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1188 d3.select(params.root + ' .sidebar_wrapper').style('float', 'left').style('width', params.sidebar_width + 'px').style('height', cont_dim.height + 'px').style('overflow', 'hidden');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1190 d3.select(params.viz.viz_wrapper).style('float', 'left').style('width', cont_dim.width + 'px').style('height', cont_dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1191 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1192
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1193 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1194 /* 18 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1195 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1197 module.exports = function calc_viz_dimensions(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1199 var cont_dim = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1200 var extra_space = params.buffer_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1202 // var screen_width = window.innerWidth;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1203 // var screen_height = window.innerHeight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1204
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1205 // // resize container, then resize visualization within container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1206 // d3.select(params.root)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1207 // .style('width', screen_width+'px')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1208 // .style('height', screen_height+'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1210 var container_width = d3.select(params.root).style('width').replace('px', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1211 var container_height = d3.select(params.root).style('height').replace('px', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1213 // get outer_margins
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1214 var outer_margins;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1215 if (params.viz.is_expand === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1216 outer_margins = params.viz.outer_margins;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1217 cont_dim.width = container_width - params.sidebar_width - extra_space;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1218 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1219 outer_margins = params.viz.outer_margins;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1220 cont_dim.width = container_width - extra_space;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1223 cont_dim.top = outer_margins.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1224 cont_dim.left = outer_margins.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1225
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1226 if (params.viz.resize) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1228 cont_dim.height = container_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1229 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1231 if (params.viz.is_expand) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1232 cont_dim.width = params.viz.fixed_size.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1233 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1234 cont_dim.width = params.viz.fixed_size.width - params.sidebar_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1235 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1237 cont_dim.height = params.viz.fixed_size.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1238 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1240 return cont_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1241 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1243 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1244 /* 19 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1245 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1247 module.exports = function get_svg_dim(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1249 params.viz.svg_dim = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1250 params.viz.svg_dim.width = Number(d3.select(params.viz.viz_wrapper).style('width').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1251
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1252 params.viz.svg_dim.height = Number(d3.select(params.viz.viz_wrapper).style('height').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1254 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1255 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1257 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1258 /* 20 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1259 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1261 module.exports = function calc_label_params(viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1263 viz.norm_labels.margin = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1265 viz.norm_labels.margin.left = viz.super_labels.margin.left + viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1266
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1267 viz.norm_labels.margin.top = viz.super_labels.margin.top + viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1269 viz.label_background = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1271 viz.label_background.row = viz.norm_labels.width.row + viz.cat_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1273 viz.label_background.col = viz.norm_labels.width.col + viz.cat_room.col + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1275 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1276 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1277
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1278 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1279 /* 21 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1280 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1281
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1282 module.exports = function calc_clust_width(viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1283
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1284 viz.clust = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1285 viz.clust.margin = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1287 // margin on left/top of the clustergram/matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1288 // 1) norm_label margin and width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1289 // 2) cat_room and uni_margin
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1290 viz.clust.margin.left = viz.norm_labels.margin.left + viz.norm_labels.width.row + viz.cat_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1292 viz.clust.margin.top = viz.norm_labels.margin.top + viz.norm_labels.width.col + viz.cat_room.col + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1293
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1294 // the clustergram/matrix width is the svg width minus:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1295 // the margin of the clustergram on the left
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1296 // the room for the spillover on the right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1297 // ** the dendro will fit in the spillover room on the right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1298 var ini_clust_width = viz.svg_dim.width - viz.clust.margin.left - viz.spillover_col_slant;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1299
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1300 // make tmp scale to calc height of triangle col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1301 var tmp_x_scale = d3.scale.ordinal().rangeBands([0, ini_clust_width]).domain(_.range(viz.num_col_nodes));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1303 var triangle_height = tmp_x_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1304
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1305 // prevent the visualization from being unnecessarily wide
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1306 if (triangle_height > viz.norm_labels.width.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1307 var reduce_width = viz.norm_labels.width.col / triangle_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1308 ini_clust_width = ini_clust_width * reduce_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1309 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1310
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1311 viz.clust.dim = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1312 viz.clust.dim.width = ini_clust_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1314 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1315 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1317 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1318 /* 22 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1319 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1320
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1321 module.exports = function calc_clust_height(viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1323 // the clustergram/matrix height is the svg width minus:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1324 // the margin of the clustergram on the top
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1325 // the dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1326 // the bottom_space
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1327 var ini_clust_height = viz.svg_dim.height - viz.clust.margin.top - viz.dendro_room.col - viz.bottom_space;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1329 viz.clust.dim.height = ini_clust_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1331 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1332 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1333
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1334 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1335 /* 23 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1336 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1337
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1338 module.exports = function calc_val_max(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1339
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1340 var val_max = Math.abs(_.max(params.network_data.col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1341 return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1342 }).value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1344 params.labels.bar_scale_col = d3.scale.linear().domain([0, val_max]).range([0, 0.75 * params.viz.norm_labels.width.col]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1346 val_max = Math.abs(_.max(params.network_data.row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1347 return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1348 }).value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1350 params.labels.bar_scale_row = d3.scale.linear().domain([0, val_max]).range([0, params.viz.norm_labels.width.row]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1352 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1353 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1355 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1356 /* 24 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1357 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1359 var ini_matrix_params = __webpack_require__(25);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1360 var calc_downsampled_levels = __webpack_require__(27);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1362 module.exports = function calc_matrix_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1363
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1364 params.matrix = ini_matrix_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1365
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1366 // X and Y scales: set domains and ranges
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1367 //////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1368 params.viz.x_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1370 params.viz.y_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1371
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1372 var inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1374 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1375
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1376 inst_order = params.viz.inst_order[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1377
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1378 if (inst_order === 'custom') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1379 inst_order = 'clust';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1380 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1381
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1382 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1383 params.viz.x_scale.domain(params.matrix.orders[inst_order + '_' + inst_rc]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1384 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1385 params.viz.y_scale.domain(params.matrix.orders[inst_order + '_' + inst_rc]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1386 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1387 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1389 // border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1390 params.viz.border_width = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1391 params.viz.border_width.x = params.viz.x_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1392 params.viz.border_width.y = params.viz.y_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1393
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1394 // rect width needs matrix and zoom parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1395 params.viz.rect_width = params.viz.x_scale.rangeBand() - params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1396
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1397 // moved calculateion to calc_matrix_params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1398 params.viz.rect_height = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1400 calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1401
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1402 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1403 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1405 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1406 /* 25 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1407 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1408
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1409 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1410 var initialize_matrix = __webpack_require__(26);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1412 module.exports = function ini_matrix_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1413
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1414 var matrix = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1416 var network_data = params.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1418 matrix.tile_colors = params.tile_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1419 matrix.bar_colors = params.bar_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1420 matrix.outline_colors = params.outline_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1421 matrix.hlight_color = params.highlight_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1422 matrix.tile_title = params.tile_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1423 matrix.show_tile_tooltips = params.show_tile_tooltips;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1424 matrix.make_tile_tooltip = params.make_tile_tooltip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1425
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1426 // initialized clicked tile and rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1427 matrix.click_hlight_x = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1428 matrix.click_hlight_y = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1429 matrix.click_hlight_row = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1430 matrix.click_hlight_col = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1432 // definition of a large matrix (num links) determines if transition is run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1433 matrix.def_large_matrix = 10000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1434 matrix.opacity_function = params.opacity_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1436 matrix.orders = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1437
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1438 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1439
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1440 // row ordering is based on col info and vice versa
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1441 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1442 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1443 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1444 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1445 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1446 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1448 // the nodes are defined using other_rc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1449 var inst_nodes = network_data[other_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1450 var num_nodes = inst_nodes.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1452 var nodes_names = utils.pluck(inst_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1453 var tmp = nodes_names.sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1455 var alpha_index = _.map(tmp, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1456 return network_data[other_rc + '_nodes_names'].indexOf(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1457 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1459 matrix.orders['alpha_' + inst_rc] = alpha_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1461 var possible_orders = ['clust', 'rank'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1463 if (_.has(inst_nodes[0], 'rankvar')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1464 possible_orders.push('rankvar');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1465 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1466
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1467 if (params.viz.all_cats[other_rc].length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1468 _.each(params.viz.all_cats[other_rc], function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1469 // the index of the category has replaced - with _
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1470 inst_cat = inst_cat.replace('-', '_');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1471 possible_orders.push(inst_cat + '_index');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1472 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1473 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1474
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1475 _.each(possible_orders, function (inst_order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1477 var tmp_order_index = d3.range(num_nodes).sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1478 return inst_nodes[b][inst_order] - inst_nodes[a][inst_order];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1479 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1481 matrix.orders[inst_order + '_' + inst_rc] = tmp_order_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1482 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1483 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1484
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1485 if (utils.has(network_data, 'all_links')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1486 matrix.max_link = _.max(network_data.all_links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1487 return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1488 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1489 matrix.true_max=_.max(network_data.all_links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1490 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1491 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1492 matrix.true_min=_.min(network_data.all_links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1493 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1494 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1495 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1496 matrix.max_link = _.max(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1497 return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1498 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1499 matrix.true_max=_.max(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1500 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1501 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1502 matrix.true_min=_.min(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1503 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1504 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1505 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1506 matrix.mid_val = (matrix.true_max + matrix.true_min) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1507 matrix.abs_max_val = Math.abs(matrix.max_link) * params.clamp_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1509 if (params.input_domain === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1510 if (matrix.opacity_function === 'linear') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1511 matrix.opacity_scale = d3.scale.linear().domain([matrix.mid_val, matrix.true_max]).clamp(true).range([0.0, 1.0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1512 } else if (matrix.opacity_function === 'log') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1513 matrix.opacity_scale = d3.scale.log().domain([0.001, matrix.abs_max_val]).clamp(true).range([0.0, 1.0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1514 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1515 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1516 if (matrix.opacity_function === 'linear') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1517 matrix.opacity_scale = d3.scale.linear().domain([0, params.input_domain]).clamp(true).range([0.0, 1.0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1518 } else if (matrix.opacity_function === 'log') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1519 matrix.opacity_scale = d3.scale.log().domain([0.001, params.input_domain]).clamp(true).range([0.0, 1.0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1520 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1521 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1523 var has_val_up = utils.has(network_data.links[0], 'value_up');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1524 var has_val_dn = utils.has(network_data.links[0], 'value_dn');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1525
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1526 if (has_val_up || has_val_dn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1527 matrix.tile_type = 'updn';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1528 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1529 matrix.tile_type = 'simple';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1530 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1532 if (utils.has(network_data.links[0], 'highlight')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1533 matrix.highlight = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1534 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1535 matrix.highlight = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1536 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1538 matrix.matrix = initialize_matrix(network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1540 matrix.wait_tooltip = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1541
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1542 return matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1543 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1545 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1546 /* 26 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1547 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1549 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1550
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1551 module.exports = function (network_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1552 var matrix = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1553 var ini_object;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1554
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1555 var keep_orig;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1556 if (utils.has(network_data.links[0], 'value_orig')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1557 keep_orig = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1558 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1559 keep_orig = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1560 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1562 network_data.row_nodes.forEach(function (tmp, row_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1564 matrix[row_index] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1565 matrix[row_index].name = network_data.row_nodes[row_index].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1566 matrix[row_index].row_index = row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1567
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1568 matrix[row_index].row_data = d3.range(network_data.col_nodes.length).map(function (col_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1569
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1570 if (utils.has(network_data.links[0], 'value_up') || utils.has(network_data.links[0], 'value_dn')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1572 ini_object = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1573 pos_x: col_index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1574 pos_y: row_index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1575 value: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1576 value_up: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1577 value_dn: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1578 highlight: 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1579 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1580 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1581
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1582 ini_object = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1583 pos_x: col_index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1584 pos_y: row_index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1585 value: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1586 highlight: 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1587 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1589
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1590 if (keep_orig) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1591 ini_object.value_orig = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1592 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1593
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1594 return ini_object;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1595 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1596 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1597
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1598 network_data.links.forEach(function (link) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1600 // transfer additional link information is necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1601 matrix[link.source].row_data[link.target].value = link.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1602 matrix[link.source].row_data[link.target].row_name = link.row_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1603 matrix[link.source].row_data[link.target].col_name = link.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1605 if (utils.has(link, 'value_up') || utils.has(link, 'value_dn')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1606 matrix[link.source].row_data[link.target].value_up = link.value_up;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1607 matrix[link.source].row_data[link.target].value_dn = link.value_dn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1608 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1609
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1610 if (keep_orig) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1611 matrix[link.source].row_data[link.target].value_orig = link.value_orig;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1612 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1614 if (link.highlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1615 matrix[link.source].row_data[link.target].highlight = link.highlight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1616 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1617 if (link.info) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1618 matrix[link.source].row_data[link.target].info = link.info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1619 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1620 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1622 return matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1623 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1625 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1626 /* 27 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1627 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1628
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1629 var calc_downsampled_matrix = __webpack_require__(28);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1630
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1631 module.exports = function calc_downsampled_levels(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1633 // console.log('---- before ---------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1634 // console.log(params.matrix.matrix[0].row_data[0].value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1636 // height of downsampled rectangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1637 var ds_height = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1639 var min_rect_height = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1641 var total_zoom = ds_height / params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1642
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1643 // amount of zooming that is tolerated for the downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1644 var inst_zt = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1645 params.viz.ds_zt = inst_zt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1646
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1647 var num_levels = Math.floor(Math.log(total_zoom) / Math.log(inst_zt));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1649 if (params.viz.rect_height < min_rect_height && num_levels > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1650
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1651 // increase ds opacity, as more rows are compressed into a single downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1652 // row, increase the opacity of the downsampled row. Max increase will be 2x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1653 // when 100 or more rows are compressed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1654 var max_opacity_scale = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1655 params.viz.ds_opacity_scale = d3.scale.linear().domain([1, 100]).range([1, max_opacity_scale]).clamp(true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1656
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1657 var ds;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1658
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1659 params.viz.ds_num_levels = num_levels;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1661 // array of downsampled parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1662 params.viz.ds = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1663
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1664 // array of downsampled matrices at varying levels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1665 params.matrix.ds_matrix = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1666
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1667 var inst_order = params.viz.inst_order.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1668
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1669 // cloning
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1670 var mat = $.extend(true, {}, params.matrix.matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1671
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1672 // calculate parameters for different levels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1673 for (var i = 0; i < num_levels; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1675 // instantaneous ds_level (-1 means no downsampling)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1676 params.viz.ds_level = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1678 ds = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1679
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1680 ds.height = ds_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1681 ds.num_levels = num_levels;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1683 var inst_zoom_tolerance = Math.pow(inst_zt, i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1685 ds.zt = inst_zoom_tolerance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1686
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1687 // the number of downsampled rows is given by the height of the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1688 // divided by the adjusted height of the downsampled rect.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1689 // the adjusted height is the height divided by the zooming tolerance of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1690 // the downsampled layer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1691
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1692 // number of downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1693 ds.num_rows = Math.round(params.viz.clust.dim.height / (ds.height / inst_zoom_tolerance));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1695 // x_scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1696 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1697 ds.x_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1698
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1699 ds.x_scale.domain(params.matrix.orders[inst_order + '_row']);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1700
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1701 // y_scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1702 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1703 ds.y_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1704 ds.y_scale.domain(d3.range(ds.num_rows + 1));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1705
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1706 ds.rect_height = ds.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1708 params.viz.ds.push(ds);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1709
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1710 var matrix = calc_downsampled_matrix(params, mat, i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1711 params.matrix.ds_matrix.push(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1714 // reset row viz_nodes since downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1715 params.viz.viz_nodes.row = d3.range(params.matrix.ds_matrix[0].length).map(String);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1716 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1717 // set ds to null if no downsampling is done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1718 params.viz.ds = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1719 // instantaneous ds_level (-1 means no downsampling)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1720 params.viz.ds_level = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1721 params.viz.ds_num_levels = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1722 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1723
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1724 // console.log('---- after ---------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1725 // console.log(params.matrix.matrix[0].row_data[0].value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1726 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1727
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1728 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1729 /* 28 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1730 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1731
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1732 module.exports = function calc_downsampled_matrix(params, mat, ds_level) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1734 var inst_num_rows = params.viz.ds[ds_level].num_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1735
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1736 var num_compressed_rows = params.network_data.row_nodes.length / inst_num_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1737
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1738 // increase ds opacity, as more rows are compressed into a single downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1739 // row, increase the opacity of the downsampled row.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1740 var opacity_factor = params.viz.ds_opacity_scale(num_compressed_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1742 var mod_val = params.viz.clust.dim.height / inst_num_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1743
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1744 var ds_mat = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1745 var inst_obj;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1746
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1747 var len_ds_array = inst_num_rows + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1748
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1749 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1750 var x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1751
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1752 // initialize array of objects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1753 for (i = 0; i < len_ds_array; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1754
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1755 inst_obj = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1756 inst_obj.row_index = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1757 inst_obj.name = String(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1758 inst_obj.all_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1760 ds_mat.push(inst_obj);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1761 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1763 _.each(mat, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1764
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1765 // row ordering information is contained in y_scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1766 var inst_y = params.viz.y_scale(inst_row.row_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1768 var ds_index = Math.round(inst_y / mod_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1770 var inst_row_data = inst_row.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1771
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1772 // gather names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1773 ds_mat[ds_index].all_names.push(inst_row.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1775 // gather row_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1776 if (_.has(ds_mat[ds_index], 'row_data')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1778 for (x = 0; x < inst_row_data.length; x++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1779 ds_mat[ds_index].row_data[x].value = ds_mat[ds_index].row_data[x].value + inst_row_data[x].value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1780 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1781 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1783 var new_data = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1784 for (x = 0; x < inst_row_data.length; x++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1785 new_data[x] = inst_row_data[x];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1786 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1787
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1788 ds_mat[ds_index].row_data = new_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1789 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1790 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1792 // average the values
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1793 _.each(ds_mat, function (tmp_ds) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1795 var tmp_row_data = tmp_ds.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1797 var num_names = tmp_ds.all_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1798
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1799 _.each(tmp_row_data, function (tmp_obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1800 tmp_obj.value = tmp_obj.value / num_names * opacity_factor;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1801 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1802 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1804 // all names were found
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1805 var all_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1806
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1807 _.each(ds_mat, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1808 all_names = all_names.concat(inst_row.all_names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1809 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1811 return ds_mat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1812 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1813
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1814 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1815 /* 29 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1816 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1818 var calc_zoom_switching = __webpack_require__(30);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1820 module.exports = function set_zoom_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1821
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1822 params.viz.zoom_scale_font = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1823 params.viz.zoom_scale_font.row = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1824 params.viz.zoom_scale_font.col = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1826 var max_zoom_limit = 0.75;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1827 var half_col_height = params.viz.x_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1828 params.viz.square_zoom = params.viz.norm_labels.width.col / half_col_height * max_zoom_limit;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1830 params.viz = calc_zoom_switching(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1831
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1832 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1833 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1835 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1836 /* 30 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1837 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1839 module.exports = function calc_zoom_switching(viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1841 var width_by_col = viz.clust.dim.width / viz.num_col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1842 var height_by_row = viz.clust.dim.height / viz.num_row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1843
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1844 viz.zoom_ratio = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1845 viz.zoom_ratio.x = width_by_col / height_by_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1846 viz.zoom_ratio.y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1848 if (viz.zoom_ratio.x < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1849 viz.zoom_ratio.y = 1 / viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1850 viz.zoom_ratio.x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1851 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1853 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1854 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1855
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1856 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1857 /* 31 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1858 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1859
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1860 module.exports = function calc_default_fs(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1861
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1862 params.labels.default_fs_row = params.viz.y_scale.rangeBand() * 1.01;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1863 params.labels.default_fs_col = params.viz.x_scale.rangeBand() * 0.87;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1865 if (params.labels.default_fs_row > params.labels.max_allow_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1866 params.labels.default_fs_row = params.labels.max_allow_fs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1867 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1868
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1869 if (params.labels.default_fs_col > params.labels.max_allow_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1870 params.labels.default_fs_col = params.labels.max_allow_fs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1871 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1873 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1874 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1876 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1877 /* 32 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1878 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1880 var calc_cat_params = __webpack_require__(33);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1881 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1882 var colors = __webpack_require__(34);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1883 var check_if_value_cats = __webpack_require__(35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1885 module.exports = function make_cat_params(params, viz, predefined_cat_colors = true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1886
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1887 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1888 var tmp_super;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1889 var inst_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1890 var inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1891
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1892 viz.show_categories = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1893 viz.all_cats = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1894 viz.cat_names = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1895 viz.cat_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1897 // this will hold the information for calculating the opacity of the value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1898 // function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1899 var ini_val_opacity = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1900 ini_val_opacity.row = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1901 ini_val_opacity.col = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1902
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1903 viz.cat_colors = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1904 viz.cat_colors.value_opacity = ini_val_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1906 var num_colors = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1907 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1909 viz.show_categories[inst_rc] = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1910
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1911 viz.all_cats[inst_rc] = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1912 var tmp_keys = _.keys(params.network_data[inst_rc + '_nodes'][0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1914 tmp_keys = tmp_keys.sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1915
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1916 _.each(tmp_keys, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1917 if (d.indexOf('cat-') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1918 viz.show_categories[inst_rc] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1919 viz.all_cats[inst_rc].push(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1920 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1921 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1922
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1923 viz.cat_info[inst_rc] = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1925 if (viz.show_categories[inst_rc]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1926
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1927 viz.cat_colors[inst_rc] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1928 viz.cat_info[inst_rc] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1929 viz.cat_names[inst_rc] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1930
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1931 _.each(viz.all_cats[inst_rc], function (cat_title) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1932
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1933 var inst_node = params.network_data[inst_rc + '_nodes'][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1935 // look for title of category in category name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1936 if (typeof inst_node[cat_title] === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1938 if (inst_node[cat_title].indexOf(super_string) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1939 tmp_super = inst_node[cat_title].split(super_string)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1940 viz.cat_names[inst_rc][cat_title] = tmp_super;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1941 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1942 viz.cat_names[inst_rc][cat_title] = cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1943 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1944 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1945 viz.cat_names[inst_rc][cat_title] = cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1946 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1948 var cat_instances_titles = utils.pluck(params.network_data[inst_rc + '_nodes'], cat_title);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1949 var cat_instances = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1950
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1951 _.each(cat_instances_titles, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1952
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1953 var new_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1954 if (inst_cat.indexOf(': ') > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1955 new_cat = inst_cat.split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1956 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1957 new_cat = inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1958 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1959
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1960 cat_instances.push(new_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1961 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1962
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1963 var cat_states = _.uniq(cat_instances_titles).sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1965 // check whether all the categories are of value type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1966 inst_info = check_if_value_cats(cat_states);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1968 // add histogram to inst_info
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1969 if (inst_info.type === 'cat_strings') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1970 // remove titles from categories in hist
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1971 var cat_hist = _.countBy(cat_instances);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1972 inst_info.cat_hist = cat_hist;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1973 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1974 inst_info.cat_hist = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1975 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1977 // pass info_info object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1978 viz.cat_info[inst_rc][cat_title] = inst_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1979
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1980 viz.cat_colors[inst_rc][cat_title] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1981
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1982 _.each(cat_states, function (cat_tmp, inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1984 inst_color = colors.get_random_color(inst_index + num_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1985
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1986 viz.cat_colors[inst_rc][cat_title][cat_tmp] = inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1988 // hack to get 'Not' categories to not be dark colored
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1989 // also doing this for false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1990 if (typeof cat_tmp === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1991 if (cat_tmp.indexOf('Not ') >= 0 || cat_tmp.indexOf(': false') > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1992 viz.cat_colors[inst_rc][cat_title][cat_tmp] = '#eee';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1993 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1994 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1996 num_colors = num_colors + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1997 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1998 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
1999 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2001 if (_.has(params.network_data, 'cat_colors') && predefined_cat_colors === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2002 viz.cat_colors[inst_rc] = params.network_data.cat_colors[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2003 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2004
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2005 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2006 // sending row color info to columns since row color info can be updated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2007 viz.cat_colors.col = viz.cat_colors.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2008 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2009 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2010
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2011 viz.cat_colors = viz.cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2012
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2013 viz.cat_colors.opacity = 0.6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2014 viz.cat_colors.active_opacity = 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2015
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2016 viz = calc_cat_params(params, viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2018 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2019 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2020
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2021 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2022 /* 33 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2023 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2024
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2025 module.exports = function calc_cat_params(params, viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2027 var separtion_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2028
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2029 // increase the width of the label container based on the label length
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2030 var label_scale = d3.scale.linear().domain([5, 15]).range([85, 120]).clamp('true');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2031
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2032 viz.cat_room = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2033 viz.cat_room.symbol_width = 12;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2034 viz.cat_room.separation = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2035
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2036 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2037
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2038 viz.norm_labels.width[inst_rc] = label_scale(params.labels[inst_rc + '_max_char']) * params[inst_rc + '_label_scale'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2039
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2040 viz['num_' + inst_rc + '_nodes'] = params.network_data[inst_rc + '_nodes'].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2042 // if (_.has(config, 'group_level')){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2043 // config.group_level[inst_rc] = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2044 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2046 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2047 viz.dendro_room[inst_rc] = viz.dendro_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2048 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2049 viz.dendro_room[inst_rc] = viz.dendro_room.symbol_width + 3 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2050 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2051
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2052 var num_cats = viz.all_cats[inst_rc].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2054 if (viz.show_categories[inst_rc]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2055
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2056 separtion_room = (num_cats - 1) * viz.cat_room.separation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2058 var adjusted_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2059 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2060 adjusted_cats = num_cats + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2061 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2062 adjusted_cats = num_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2063 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2065 viz.cat_room[inst_rc] = adjusted_cats * viz.cat_room.symbol_width + separtion_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2066 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2067 // no categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2068 if (inst_rc == 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2069 viz.cat_room[inst_rc] = viz.cat_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2070 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2071 viz.cat_room[inst_rc] = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2072 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2073 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2074 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2075
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2076 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2077 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2078
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2079 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2080 /* 34 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2081 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2082
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2083 // colors from http://graphicdesign.stackexchange.com/revisions/3815/8
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2084 var all_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2085
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2086 all_colors = ["#393b79", "#aec7e8", "#ff7f0e", "#ffbb78", "#98df8a", "#bcbd22", "#404040", "#ff9896", "#c5b0d5", "#8c564b", "#1f77b4", "#5254a3", "#FFDB58", "#c49c94", "#e377c2", "#7f7f7f", "#2ca02c", "#9467bd", "#dbdb8d", "#17becf", "#637939", "#6b6ecf", "#9c9ede", "#d62728", "#8ca252", "#8c6d31", "#bd9e39", "#e7cb94", "#843c39", "#ad494a", "#d6616b", "#7b4173", "#a55194", "#ce6dbd", "#de9ed6"];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2087
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2088 // too light colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2089 // "#e7969c",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2090 // "#c7c7c7",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2091 // "#f7b6d2",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2092 // "#cedb9c",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2093 // "#9edae5",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2095 function get_default_color() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2096 return '#EEE';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2097 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2099 function get_random_color(i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2100 return all_colors[i % get_num_colors()];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2101 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2102
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2103 function get_num_colors() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2104 return all_colors.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2105 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2106
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2107 module.exports = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2108 get_default_color: get_default_color,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2109 get_random_color: get_random_color,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2110 get_num_colors: get_num_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2111 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2113 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2114 /* 35 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2115 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2116
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2117 module.exports = function check_if_value_cats(cat_states) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2119 var tmp_cat = cat_states[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2121 var has_title = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2122 var might_have_values = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2123 var cat_types = 'cat_strings';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2124 var max_abs_val = NaN;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2125 var all_values = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2126 var cat_scale = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2128 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2130 if (typeof tmp_cat === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2131 if (tmp_cat.indexOf(super_string) > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2132 has_title = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2133 tmp_cat = tmp_cat.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2134 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2135 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2136
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2137 if (isNaN(tmp_cat) == false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2138 might_have_values = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2139 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2140
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2141 // check each value for number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2142 if (might_have_values) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2144 // the default state is that all are now values, check each one
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2145 cat_types = 'cat_values';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2147 _.each(cat_states, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2148
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2149 if (has_title) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2150 inst_cat = inst_cat.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2151 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2153 // checking whether inst_cat is 'not a number'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2154 if (isNaN(inst_cat) === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2155 cat_types = 'cat_strings';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2156 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2157 inst_cat = parseFloat(inst_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2158 all_values.push(inst_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2159 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2160 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2161 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2163 if (cat_types === 'cat_values') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2165 // get absolute value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2166 var max_value = _.max(all_values, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2167 return Math.abs(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2168 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2170 max_abs_val = Math.abs(max_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2172 cat_scale = d3.scale.linear().domain([0, max_abs_val]).range([0, 1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2173 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2174
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2175 var inst_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2176 inst_info.type = cat_types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2177 inst_info.max_abs_val = max_abs_val;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2178 inst_info.cat_scale = cat_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2180 return inst_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2181 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2182
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2183 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2184 /* 36 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2185 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2187 module.exports = function ini_zoom_info() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2188
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2189 var zoom_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2190 zoom_info.zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2191 zoom_info.zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2192 zoom_info.trans_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2193 zoom_info.trans_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2194
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2195 return zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2196 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2198 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2199 /* 37 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2200 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2202 var generate_matrix = __webpack_require__(38);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2203 var make_row_label_container = __webpack_require__(49);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2204 var make_col_label_container = __webpack_require__(103);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2205 var generate_super_labels = __webpack_require__(111);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2206 var spillover = __webpack_require__(112);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2207 var initialize_resizing = __webpack_require__(123);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2208 var ini_doubleclick = __webpack_require__(133);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2209 var make_col_cat = __webpack_require__(152);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2210 var make_row_cat = __webpack_require__(158);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2211 var trim_text = __webpack_require__(118);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2212 var make_row_dendro = __webpack_require__(159);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2213 var make_col_dendro = __webpack_require__(160);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2214 var make_svg_dendro_sliders = __webpack_require__(161);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2215 var make_row_dendro_spillover = __webpack_require__(164);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2217 module.exports = function make_viz(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2219 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2221 d3.select(params.viz.viz_wrapper + ' svg').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2223 var svg_group = d3.select(params.viz.viz_wrapper).append('svg').attr('class', 'viz_svg').attr('id', 'svg_' + params.root.replace('#', '')).attr('width', params.viz.svg_dim.width).attr('height', params.viz.svg_dim.height).attr('is_zoom', 0).attr('stopped_zoom', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2225 svg_group.append('rect').attr('class', 'super_background').style('width', params.viz.svg_dim.width).style('height', params.viz.svg_dim.height).style('fill', 'white');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2227 generate_matrix(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2229 make_row_label_container(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2231 if (params.viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2232 make_row_dendro(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2233 make_col_dendro(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2234 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2235
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2236 make_row_dendro_spillover(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2238 make_col_label_container(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2240 // initial trim text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2241 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2242 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2244 var inst_fs = Number(d3.select('.' + inst_rc + '_label_group').select('text').style('font-size').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2246 var min_trim_fs = 8;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2247 if (inst_fs > min_trim_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2248 d3.selectAll(params.root + ' .' + inst_rc + '_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2249 trim_text(params, this, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2250 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2251 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2252 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2253 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2255 // make category colorbars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2256 make_row_cat(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2257 if (params.viz.show_categories.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2258 make_col_cat(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2259 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2261 spillover(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2263 if (params.labels.super_labels) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2264 generate_super_labels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2265 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2266
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2267 // sliders should go above super labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2268 make_svg_dendro_sliders(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2269
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2270 function border_colors() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2271 var inst_color = params.viz.super_border_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2272 if (params.viz.is_expand || params.show_viz_border == false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2273 inst_color = 'white';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2274 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2275 return inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2276 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2277
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2278 // left border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2279 d3.select(params.viz.viz_svg).append('rect').classed('left_border', true).classed('borders', true).attr('fill', border_colors).attr('width', params.viz.grey_border_width).attr('height', params.viz.svg_dim.height).attr('transform', 'translate(0,0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2281 // right border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2282 d3.select(params.viz.viz_svg).append('rect').classed('right_border', true).classed('borders', true).attr('fill', border_colors).attr('width', params.viz.grey_border_width).attr('height', params.viz.svg_dim.height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2283 var inst_offset = params.viz.svg_dim.width - params.viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2284 return 'translate(' + inst_offset + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2285 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2287 // top border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2288 d3.select(params.viz.viz_svg).append('rect').classed('top_border', true).classed('borders', true).attr('fill', border_colors).attr('width', params.viz.svg_dim.width).attr('height', params.viz.grey_border_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2289 var inst_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2290 return 'translate(' + inst_offset + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2291 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2293 // bottom border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2294 d3.select(params.viz.viz_svg).append('rect').classed('bottom_border', true).classed('borders', true).attr('fill', border_colors).attr('width', params.viz.svg_dim.width).attr('height', params.viz.grey_border_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2295 var inst_offset = params.viz.svg_dim.height - params.viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2296 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2297 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2299 initialize_resizing(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2300
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2301 ini_doubleclick(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2303 if (params.viz.do_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2304 d3.select(params.viz.zoom_element).call(params.zoom_behavior);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2305 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2306
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2307 d3.select(params.viz.zoom_element).on('dblclick.zoom', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2308 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2309
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2310 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2311 /* 38 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2312 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2314 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2315 var draw_gridlines = __webpack_require__(39);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2316 var add_click_hlight = __webpack_require__(40);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2317 var make_matrix_rows = __webpack_require__(41);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2319 module.exports = function (params, svg_elem) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2320 var network_data = params.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2322 var matrix = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2323 var clust_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2325 // append a group that will hold clust_group and position it once
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2326 clust_group = svg_elem.append('g').attr('class', 'clust_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.clust.margin.top + ')').append('g').attr('class', 'clust_group').classed('clust_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2327
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2328 // clustergram background rect
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2329 clust_group.append('rect').classed('background', true).classed('grey_background', true).style('fill', '#eee').style('opacity', 0.25).attr('width', params.viz.clust.dim.width).attr('height', params.viz.clust.dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2331 // pass in params and the rows (row_nodes) that need to be made
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2332 // in this case all row nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2333 // make_matrix_rows(params, params.matrix.matrix, params.network_data.row_nodes_names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2335 // initialize at ds_level 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2336 if (params.viz.ds === null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2337 // do not use downsampled matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2338 make_matrix_rows(params, params.matrix.matrix, 'all', params.viz.ds_level);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2339 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2340 // use downsampled matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2341 make_matrix_rows(params, params.matrix.ds_matrix[0], 'all', params.viz.ds_level);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2344 // add callback function to tile group - if one is supplied by the user
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2345 if (typeof params.click_tile === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2346 d3.selectAll(params.root + ' .tile').on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2347
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2348 // export row/col name and value from tile
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2349 var tile_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2350 tile_info.row = params.network_data.row_nodes[d.pos_y].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2351 tile_info.col = params.network_data.col_nodes[d.pos_x].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2352 tile_info.value = d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2354 if (utils.has(d, 'value_up')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2355 tile_info.value_up = d.value_up;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2356 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2357 if (utils.has(d, 'value_dn')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2358 tile_info.value_dn = d.value_dn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2359 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2360 if (utils.has(d, 'info')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2361 tile_info.info = d.info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2362 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2363 // run the user supplied callback function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2364 params.click_tile(tile_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2365 add_click_hlight(params, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2366 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2367 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2369 // highlight clicked tile
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2370 if (params.tile_click_hlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2371 d3.selectAll(params.root + ' .tile').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2372 add_click_hlight(params, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2373 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2374 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2375 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2376
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2377 // draw grid lines after drawing tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2378 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2379 var duration = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2380 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2381 draw_gridlines(params, delays, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2383 // Matrix API
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2384 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2385 get_clust_group: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2386 return clust_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2387 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2388 get_matrix: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2389 return matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2390 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2391 get_nodes: function (type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2392 if (type === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2393 return network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2394 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2395 return network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2396 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2397 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2398 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2400 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2401 /* 39 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2402 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2403
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2404 // var grid_lines_viz = require('./grid_lines_viz');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2405 // var toggle_grid_lines = require('./toggle_grid_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2406
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2407 module.exports = function draw_gridlines(params, delays, duration) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2408
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2409 // var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2410 // var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2412 // // Fade in new gridlines
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2413 // ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2414
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2415 // // append horizontal line groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2416 // var horz_lines = d3.select(params.root+' .clust_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2417 // .selectAll('.horz_lines')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2418 // .data(row_nodes, function(d){return d.name;})
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2419 // .enter()
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2420 // .append('g')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2421 // .attr('class','horz_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2422
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2423 // // append vertical line groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2424 // var vert_lines = d3.select(params.root+' .clust_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2425 // .selectAll('.vert_lines')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2426 // .data(col_nodes)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2427 // .enter()
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2428 // .append('g')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2429 // .attr('class', 'vert_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2431 // grid_lines_viz(params, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2432
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2433 // horz_lines
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2434 // .select('line')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2435 // .attr('opacity',0)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2436 // .attr('stroke','white')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2437 // .attr('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2439 // vert_lines
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2440 // .select('line')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2441 // .style('stroke', 'white')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2442 // .attr('opacity',0)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2443 // .transition().delay(delays.enter).duration(2*duration)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2444 // .attr('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2446 // toggle_grid_lines(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2448 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2450 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2451 /* 40 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2452 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2454 module.exports = function (params, clicked_rect) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2456 // get x position of rectangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2457 d3.select(clicked_rect).each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2458 var pos_x = d.pos_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2459 var pos_y = d.pos_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2461 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2463 if (pos_x != params.matrix.click_hlight_x || pos_y != params.matrix.click_hlight_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2465 // save pos_x to params.viz.click_hlight_x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2466 params.matrix.click_hlight_x = pos_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2467 params.matrix.click_hlight_y = pos_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2469 // draw the highlighting rectangle as four rectangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2470 // so that the width and height can be controlled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2471 // separately
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2473 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2474 var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2475
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2476 var hlight_width = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2477 var hlight_height = rel_width_hlight * params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2478
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2479 // top highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2480 d3.select(clicked_rect.parentNode).append('rect').classed('click_hlight', true).classed('top_hlight', true).attr('width', params.viz.x_scale.rangeBand()).attr('height', hlight_height).attr('fill', params.matrix.hlight_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2481 return 'translate(' + params.viz.x_scale(pos_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2482 }).attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2484 // left highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2485 d3.select(clicked_rect.parentNode)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2486 .append('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2487 .classed('click_hlight', true)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2488 .classed('left_hlight', true)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2489 .attr('width', hlight_width)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2490 .attr('height', params.viz.y_scale.rangeBand() - hlight_height * 0.99)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2491 .attr('fill', params.matrix.hlight_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2492 return "translate(" + params.viz.x_scale(pos_x) + "," + hlight_height * 0.99 + ")";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2493 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2494 .attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2495
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2496 // right highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2497 d3.select(clicked_rect.parentNode).append('rect').classed('click_hlight', true).classed('right_hlight', true).attr('width', hlight_width).attr('height', params.viz.y_scale.rangeBand() - hlight_height * 0.99).attr('fill', params.matrix.hlight_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2498 var tmp_translate = params.viz.x_scale(pos_x) + params.viz.x_scale.rangeBand() - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2499 return 'translate(' + tmp_translate + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2500 }).attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2501
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2502 // bottom highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2503 d3.select(clicked_rect.parentNode).append('rect').classed('click_hlight', true).classed('bottom_hlight', true).attr('width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2504 return params.viz.x_scale.rangeBand() - 1.98 * hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2505 }).attr('height', hlight_height).attr('fill', params.matrix.hlight_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2506 var tmp_translate_x = params.viz.x_scale(pos_x) + hlight_width * 0.99;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2507 var tmp_translate_y = params.viz.y_scale.rangeBand() - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2508 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2509 }).attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2510 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2511 params.matrix.click_hlight_x = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2512 params.matrix.click_hlight_y = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2513 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2514 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2515 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2517 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2518 /* 41 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2519 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2521 var make_simple_rows = __webpack_require__(42);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2522 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2523
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2524 // current matrix can change with downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2525 module.exports = function make_matrix_rows(params, current_matrix, row_names = 'all', ds_level = -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2527 // defaults
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2528 var y_scale = params.viz.y_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2529 var make_tip = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2530 var row_class = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2532 if (ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2533 y_scale = params.viz.ds[ds_level].y_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2534
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2535 // do not show tip when rows are downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2536 make_tip = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2537 row_class = 'ds' + String(ds_level) + '_row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2538 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2540 if (make_tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2541
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2542 // do not remove tile_tip here
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2543 /////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2545 // make rows in the matrix - add key names to rows in matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2546 /////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2547 // d3-tooltip - for tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2548 var tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2549 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2550 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_tile_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2551 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2552 }).style('display', 'none').direction('nw').offset([0, 0]).html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2553 var inst_value = String(d.value.toFixed(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2554 var tooltip_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2556 if (params.keep_orig) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2557 var orig_value = String(d.value_orig.toFixed(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2558 tooltip_string = '<p>' + d.row_name + ' and ' + d.col_name + '</p>' + '<p> normalized value: ' + inst_value + '</p>' + '<div> original value: ' + orig_value + '</div>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2559 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2560 tooltip_string = '<p>' + d.row_name + ' and ' + d.col_name + '</p>' + '<div> value: ' + inst_value + '</div>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2561 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2562
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2563 return tooltip_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2564 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2565 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2566 tip = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2567 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2569 // gather a subset of row data from the matrix or use all rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2570 var matrix_subset = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2571 if (row_names === 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2572 matrix_subset = current_matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2573 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2574 _.each(current_matrix, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2575 if (_.contains(row_names, inst_row.name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2576 matrix_subset.push(inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2577 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2578 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2579 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2581 d3.select(params.root + ' .clust_group').selectAll('.row').data(matrix_subset, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2582 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2583 }).enter().append('g').classed(row_class, true).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2584 return 'translate(0,' + y_scale(d.row_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2585 }).each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2586 make_simple_rows(params, d, tip, this, ds_level);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2587 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2588
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2589 if (params.viz.ds_level === -1 && tip != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2590 d3.selectAll(params.root + ' .row').call(tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2591 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2592 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2593
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2594 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2595 /* 42 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2596 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2597
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2598 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2600 var draw_up_tile = __webpack_require__(43);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2601 var draw_dn_tile = __webpack_require__(44);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2602 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2603 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2604 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2606 module.exports = function make_simple_rows(params, inst_data, tip, row_selection, ds_level = -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2607
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2608 var inp_row_data = inst_data.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2609
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2610 var make_tip = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2611 var rect_height = params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2612 if (ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2613 // make_tip = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2614 rect_height = params.viz.ds[ds_level].rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2615 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2617 var keep_orig;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2618 if (_.has(params.network_data.links[0], 'value_orig')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2619 keep_orig = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2620 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2621 keep_orig = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2622 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2624 var row_values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2625 if (keep_orig === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2626 // value: remove zero values to make visualization faster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2627 row_values = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2628 return num.value !== 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2629 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2630 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2631 row_values = inp_row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2632 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2633
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2634 // generate tiles in the current row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2635 var tile = d3.select(row_selection).selectAll('rect').data(row_values, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2636 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2637 }).enter().append('rect').attr('class', 'tile row_tile').attr('width', params.viz.rect_width).attr('height', rect_height).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2638 // switch the color based on up/dn value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2639 var inst_fill;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2640 if (d.value_orig === 'NaN') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2641 inst_fill = '#000000';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2642 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2643 inst_fill = d.value > params.matrix.mid_val ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2644 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2645 return inst_fill;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2646 }).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2647 // calculate output opacity using the opacity scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2648 var inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2649 if (d.value_orig === 'NaN') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2650 // console.log('found NaN while making tiles');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2651 inst_opacity = 0.175;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2652 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2653 var op_val = params.matrix.mid_val + Math.abs(d.value - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2654
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2655 inst_opacity = params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2656 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2657 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2658 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2659 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2660 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2662 if (make_tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2663 tile.on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2664 for (var _len = arguments.length, args = Array(_len), _key = 0; _key < _len; _key++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2665 args[_key] = arguments[_key];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2666 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2667 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2668 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2669 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2670 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2671 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2672
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2673 // // tile circles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2674 // /////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2675 // var tile = d3.select(row_selection)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2676 // .selectAll('circle')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2677 // .data(row_values, function(d){ return d.col_name; })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2678 // .enter()
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2679 // .append('circle')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2680 // .attr('cx', params.viz.rect_height/2)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2681 // .attr('cy', params.viz.rect_height/2)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2682 // .attr('r', params.viz.rect_height/3)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2683 // .attr('class', 'tile_circle')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2684 // // .attr('width', params.viz.rect_width/2)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2685 // // .attr('height', params.viz.rect_height/2)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2686 // // // switch the color based on up/dn value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2687 // // .style('fill', function(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2688 // // // return d.value > 0 ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2689 // // return 'black';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2690 // // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2691 // .on('mouseover', function(...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2692 // mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2693 // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2694 // .on('mouseout', function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2695 // mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2696 // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2697 // .style('fill-opacity', function(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2698 // // calculate output opacity using the opacity scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2699 // var output_opacity = params.matrix.opacity_scale(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2700 // if (output_opacity < 0.3){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2701 // output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2702 // } else if (output_opacity < 0.6){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2703 // output_opacity = 0.35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2704 // } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2705 // output_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2706 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2707 // return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2708 // // return 0.1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2709 // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2710 // .attr('transform', function(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2711 // return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2712 // });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2714
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2715 if (params.matrix.tile_type == 'updn') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2716
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2717 // value split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2718 var row_split_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2719 return num.value_up != 0 || num.value_dn != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2720 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2722 // tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2723 d3.select(row_selection).selectAll('.tile_up').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2724 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2725 }).enter().append('path').attr('class', 'tile_up').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2726 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2727 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2728 fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2729 }).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2730 return params.matrix.tile_colors[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2731 }).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2732 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2733 if (Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2734 inst_opacity = params.matrix.opacity_scale(Math.abs(d.value_up));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2735 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2736 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2737 }).on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2738 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2739 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2740 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2741 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2742
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2743 // tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2744 d3.select(row_selection).selectAll('.tile_dn').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2745 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2746 }).enter().append('path').attr('class', 'tile_dn').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2747 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2748 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2749 fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2750 }).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2751 return params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2752 }).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2753 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2754 if (Math.abs(d.value_up) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2755 inst_opacity = params.matrix.opacity_scale(Math.abs(d.value_dn));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2756 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2757 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2758 }).on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2759 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2760 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2761 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2762 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2764 // remove rect when tile is split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2765 tile.each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2766 if (Math.abs(d.value_up) > 0 && Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2767 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2768 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2769 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2770 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2771
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2772 // append title to group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2773 if (params.matrix.tile_title) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2774 tile.append('title').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2775 var inst_string = 'value: ' + d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2776 return inst_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2777 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2778 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2779 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2780
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2781 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2782 /* 43 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2783 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2785 module.exports = function draw_up_tile(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2786
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2787 var start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2788 var final_x = params.viz.x_scale.rangeBand() - params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2789 var start_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2790 var final_y = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2792 var output_string = 'M' + start_x + ',' + start_y + ', L' + start_x + ', ' + final_y + ', L' + final_x + ',0 Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2794 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2795 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2797 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2798 /* 44 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2799 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2801 module.exports = function draw_dn_tile(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2802
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2803 var start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2804 var final_x = params.viz.x_scale.rangeBand() - params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2805 var start_y = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2806 var final_y = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2807
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2808 var output_string = 'M' + start_x + ', ' + start_y + ' , L' + final_x + ', ' + final_y + ', L' + final_x + ',0 Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2810 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2811 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2813 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2814 /* 45 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2815 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2817 module.exports = function mouseover_tile(params, inst_selection, tip, inst_arguments) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2818
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2819 var inst_data = inst_arguments[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2820 var args = [].slice.call(inst_arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2821 var timeout;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2822 var delay = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2824 d3.select(inst_selection).classed('hovering', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2826 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2827
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2828 d3.selectAll(params.root + ' .' + inst_rc + '_label_group text').style('font-weight', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2829 var font_weight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2830 var inst_found = inst_data[inst_rc + '_name'].replace(/_/g, ' ') === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2831
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2832 if (inst_found) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2833 font_weight = 'bold';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2834 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2835 font_weight = 'normal';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2836 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2837 return font_weight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2838 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2839 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2841 args.push(inst_selection);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2842 clearTimeout(timeout);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2843 timeout = setTimeout(check_if_hovering, delay, inst_selection);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2845 function check_if_hovering() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2846
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2847 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2849 var inst_zoom = Number(d3.select(params.root + ' .viz_svg').attr('is_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2850
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2851 if (inst_zoom === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2853 if (params.matrix.show_tile_tooltips && tip !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2855 d3.selectAll(params.viz.root_tips + '_tile_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2856
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2857 tip.show.apply(inst_selection, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2859 if (params.tile_tip_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2860 var tile_info = args[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2861 params.tile_tip_callback(tile_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2862 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2864 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2865 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2866 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2867 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2868
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2869 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2870 /* 46 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2871 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2873 module.exports = function mouseout_tile(params, inst_selection, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2875 d3.select(inst_selection).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2877 d3.selectAll(params.viz.root_tips + '_tile_tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2879 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2880
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2881 d3.selectAll(params.root + ' .' + inst_rc + '_label_group text').style('font-weight', 'normal');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2882 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2883
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2884 if (tip != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2885 tip.hide();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2886 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2887 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2889 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2890 /* 47 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2891 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2893 module.exports = function fine_position_tile(params, d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2895 var offset_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2897 // prevent rows not in x_scale domain from causing errors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2898 if (d.pos_x in params.viz.x_scale.domain()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2899 offset_x = params.viz.x_scale(d.pos_x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2900 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2901 offset_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2902 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2903
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2904 var x_pos = offset_x + 0.5 * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2905 var y_pos = 0.5 * params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2906 return 'translate(' + x_pos + ',' + y_pos + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2907 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2909 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2910 /* 48 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2911 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2912
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2913 module.exports = function d3_tip_custom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2914 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2915 // Copyright (c) 2013 Justin Palmer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2916 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2917 // Tooltips for d3.js SVG visualizations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2919 // Public - contructs a new tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2920 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2921 // Returns a tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2922 // ******************
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2923 // Nick Fernandez modified version 4-19-2016
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2924 // improved multiple svg, scrolling+zooming support
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2925 // made syntax fixes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2926 //////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2927 var direction = d3_tip_direction,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2928 offset = d3_tip_offset,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2929 html = d3_tip_html,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2930 node = initNode(),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2931 svg = null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2932 point = null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2933 target = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2935 function tip(vis) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2936 svg = getSVGNode(vis);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2937 point = svg.createSVGPoint();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2938 document.body.appendChild(node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2939 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2941 // Public - show the tooltip on the screen
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2942 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2943 // Returns a tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2944 tip.show = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2945
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2946 var args = Array.prototype.slice.call(arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2947 if (args[args.length - 1] instanceof SVGElement) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2948 target = args.pop();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2949 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2950
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2951 var content = html.apply(this, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2952 var poffset = offset.apply(this, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2953 var dir = direction.apply(this, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2954 var nodel = d3.select(node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2955 var i = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2956 var coords;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2958 // add z-index to make sure tooltips appear on top
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2959 nodel.html(content).style({ opacity: 1, 'pointer-events': 'all' }).style('z-index', 99);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2961 while (i--) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2962 nodel.classed(directions[i], false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2963 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2964 coords = direction_callbacks.get(dir).apply(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2965 nodel.classed(dir, true).style({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2966 top: coords.top + poffset[0] + 'px',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2967 left: coords.left + poffset[1] + 'px'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2968 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2969
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2970 // quick fix for fading tile tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2971 if (isFunction(this) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2972
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2973 var inst_class = d3.select(this).attr('class');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2975 if (inst_class.indexOf('tile') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2976 setTimeout(fade_tips, 5000, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2977 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2978 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2979
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2980 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2981 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2983 // Public - hide the tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2984 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2985 // Returns a tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2986 tip.hide = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2988 // // hide all d3-tip tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2989 // d3.selectAll('.d3-tip')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2990 // .style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2992 var nodel = d3.select(node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2993 nodel.style({ opacity: 0, 'pointer-events': 'none' });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2994 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2995 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2997 // Public: Proxy attr calls to the d3 tip container. Sets or gets attribute value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2998 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
2999 // n - name of the attribute
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3000 // v - value of the attribute
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3001 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3002 // Returns tip or attribute value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3003 tip.attr = function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3004 if (arguments.length < 2 && typeof n === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3005 return d3.select(node).attr(n);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3006 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3007 var args = Array.prototype.slice.call(arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3008 d3.selection.prototype.attr.apply(d3.select(node), args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3009 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3010
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3011 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3012 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3014 // Public: Proxy style calls to the d3 tip container. Sets or gets a style value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3015 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3016 // n - name of the property
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3017 // v - value of the property
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3018 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3019 // Returns tip or style property value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3020 tip.style = function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3021 if (arguments.length < 2 && typeof n === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3022 return d3.select(node).style(n);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3023 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3024 var args = Array.prototype.slice.call(arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3025 d3.selection.prototype.style.apply(d3.select(node), args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3026 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3027
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3028 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3029 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3031 // Public: Set or get the direction of the tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3032 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3033 // v - One of n(north), s(south), e(east), or w(west), nw(northwest),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3034 // sw(southwest), ne(northeast) or se(southeast)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3035 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3036 // Returns tip or direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3037 tip.direction = function (v) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3038 if (!arguments.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3039 return direction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3040 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3041 direction = v == null ? v : d3.functor(v);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3043 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3044 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3046 // Public: Sets or gets the offset of the tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3047 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3048 // v - Array of [x, y] offset
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3049 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3050 // Returns offset or
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3051 tip.offset = function (v) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3052 if (!arguments.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3053 return offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3054 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3055 offset = v == null ? v : d3.functor(v);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3056
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3057 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3058 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3060 // Public: sets or gets the html value of the tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3061 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3062 // v - String value of the tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3063 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3064 // Returns html value or tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3065 tip.html = function (v) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3066 if (!arguments.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3067 return html;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3068 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3069 html = v == null ? v : d3.functor(v);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3070
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3071 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3072 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3073
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3074 function d3_tip_direction() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3075 return 'n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3076 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3077 function d3_tip_offset() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3078 return [0, 0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3079 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3080 function d3_tip_html() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3081 return ' ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3082 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3084 var direction_callbacks = d3.map({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3085 n: direction_n,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3086 s: direction_s,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3087 e: direction_e,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3088 w: direction_w,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3089 nw: direction_nw,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3090 ne: direction_ne,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3091 sw: direction_sw,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3092 se: direction_se,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3093 south_custom: direction_south_custom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3094 }),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3095 directions = direction_callbacks.keys();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3097 function direction_south_custom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3098 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3100 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3101 top: bbox.s.y,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3102 left: bbox.s.x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3103 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3104 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3106 function direction_n() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3107 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3108 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3109 top: bbox.n.y - node.offsetHeight,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3110 left: bbox.n.x - node.offsetWidth / 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3111 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3112 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3113
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3114 function direction_s() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3115 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3116 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3117 top: bbox.s.y,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3118 left: bbox.s.x - node.offsetWidth / 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3119 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3120 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3121
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3122 function direction_e() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3123 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3124 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3125 top: bbox.e.y - node.offsetHeight / 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3126 left: bbox.e.x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3127 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3128 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3130 function direction_w() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3131 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3132 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3133 top: bbox.w.y - node.offsetHeight / 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3134 left: bbox.w.x - node.offsetWidth
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3135 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3136 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3137
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3138 function direction_nw() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3139 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3140 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3141 top: bbox.nw.y - node.offsetHeight,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3142 left: bbox.nw.x - node.offsetWidth
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3143 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3144 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3146 function direction_ne() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3147 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3148 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3149 top: bbox.ne.y - node.offsetHeight,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3150 left: bbox.ne.x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3151 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3152 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3154 function direction_sw() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3155 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3156 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3157 top: bbox.sw.y,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3158 left: bbox.sw.x - node.offsetWidth
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3159 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3160 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3162 function direction_se() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3163 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3164 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3165 top: bbox.se.y,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3166 left: bbox.e.x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3167 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3168 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3170 function initNode() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3171 var node = d3.select(document.createElement('div'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3172 node.style({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3173 position: 'absolute',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3174 opacity: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3175 pointerEvents: 'none',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3176 boxSizing: 'border-box'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3177 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3179 return node.node();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3180 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3181
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3182 function getSVGNode(el) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3183 el = el.node();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3184 if (el.tagName.toLowerCase() == 'svg') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3185 return el;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3186 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3188 return el.ownerSVGElement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3189 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3191 // Private - gets the screen coordinates of a shape
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3192 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3193 // Given a shape on the screen, will return an SVGPoint for the directions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3194 // n(north), s(south), e(east), w(west), ne(northeast), se(southeast), nw(northwest),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3195 // sw(southwest).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3196 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3197 // +-+-+
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3198 // | |
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3199 // + +
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3200 // | |
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3201 // +-+-+
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3202 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3203 // Returns an Object {n, s, e, w, nw, sw, ne, se}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3204 function getScreenBBox() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3205 var targetel = target || d3.event.target;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3206 var bbox = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3207 var matrix = targetel.getScreenCTM();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3208 var tbbox = targetel.getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3209 var width = tbbox.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3210 var height = tbbox.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3211 var x = tbbox.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3212 var y = tbbox.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3213 var scrollTop = document.documentElement.scrollTop || document.body.scrollTop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3214 var scrollLeft = document.documentElement.scrollLeft || document.body.scrollLeft;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3216 // Nick - prevents bugs with scrolling and zooming on the same object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3217 matrix.a = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3218 matrix.d = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3219 // changing order of adding scrolling,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3220 // original ordering was causing problems with pre-translated or rotated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3221 // elements.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3222 matrix.e = matrix.e + scrollLeft;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3223 matrix.f = matrix.f + scrollTop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3224 point.x = x; //+ scrollLeft
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3225 point.y = y; //+ scrollTop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3227 bbox.nw = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3228 point.x = point.x + width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3229 bbox.ne = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3230 point.y = point.y + height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3231 bbox.se = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3232 point.x = point.x - width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3233 bbox.sw = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3234 point.y = point.y - height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3235 bbox.w = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3236 point.x = point.x + width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3237 bbox.e = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3238 point.x = point.x - width / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3239 point.y = point.y - height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3240 bbox.n = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3241 point.y = point.y + height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3242 bbox.s = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3244 return bbox;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3245 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3247 // only fade tips if you are still hovering on the current tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3248 function fade_tips(inst_selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3249
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3250 var is_hovering = d3.select(inst_selection).classed('hovering');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3251
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3252 if (is_hovering) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3253 d3.selectAll('.d3-tip').transition().duration(250).style('opacity', 0).style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3254 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3255 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3257 function isFunction(functionToCheck) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3258 var getType = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3259 return functionToCheck && getType.toString.call(functionToCheck) === '[object Function]';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3260 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3261
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3262 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3263 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3265 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3266 /* 49 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3267 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3269 var make_row_labels = __webpack_require__(50);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3271 module.exports = function make_row_label_container(cgm, text_delay) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3273 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3275 var row_container;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3277 // row container holds all row text and row visualizations (triangles rects)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3278 ////////////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3279 if (d3.select(params.viz.viz_svg + ' .row_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3280 row_container = d3.select(params.viz.viz_svg).append('g').classed('row_container', true).attr('transform', 'translate(' + params.viz.norm_labels.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3281 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3282 row_container = d3.select(params.viz.viz_svg).select('.row_container').attr('transform', 'translate(' + params.viz.norm_labels.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3283 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3284
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3285 if (d3.select(params.root + ' .row_white_background').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3286 row_container.append('rect').classed('row_white_background', true).classed('white_bars', true).attr('fill', params.viz.background_color).attr('width', params.viz.label_background.row).attr('height', 30 * params.viz.clust.dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3287 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3289 // add container to hold text row labels if not already there
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3290 if (d3.select(params.root + ' .row_label_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3291 row_container.append('g').classed('row_label_container', true).attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)').append('g').classed('row_label_zoom_container', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3292 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3293 row_container.select(params.root + ' .row_label_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3294 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3296 // make row labels in the container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3297 ///////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3298 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3299 make_row_labels(cgm, 'all', text_delay);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3300 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3301 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3303 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3304 /* 50 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3305 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3306
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3307 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3308 var add_row_click_hlight = __webpack_require__(51);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3309 var row_reorder = __webpack_require__(52);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3310 var make_row_tooltips = __webpack_require__(102);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3311
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3312 module.exports = function make_row_labels(cgm, row_names = 'all', text_delay = 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3314 // console.log('make_row_labels')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3315 // console.log(row_names)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3317 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3318 var row_nodes = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3319
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3320 if (row_names === 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3321 row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3322 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3323 _.each(params.network_data.row_nodes, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3324 if (_.contains(row_names, inst_row.name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3325 row_nodes.push(inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3326 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3327 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3328 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3329
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3330 // make row labels in row_label_zoom_container, bind row_nodes data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3331 var row_labels = d3.select(params.root + ' .row_label_zoom_container').selectAll('g').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3332 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3333 }).enter().append('g').classed('row_label_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3335 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3336 row_labels.attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3337 // var inst_index = d.row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3338 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3339 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3340 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3341
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3342 row_labels.on('dblclick', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3344 var data_attr = '__data__';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3345 var row_name = this[data_attr].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3347 // if (params.sim_mat){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3348 // row_reorder(cgm, this, row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3350 // d3.selectAll(params.root+' .col_label_text')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3351 // .filter(function(d){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3352 // return d.name == row_name;}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3353 // )[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3355 // // this is causing buggyness may reenable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3356 // // col_reorder -> two_translate_zoom -> show_visible_area -> make_row_labels -> col_reorder
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3357 // // col_reorder(cgm, col_selection, row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3359 // } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3360 // row_reorder(cgm, this, row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3361 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3362
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3363 row_reorder(cgm, this, row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3365 if (params.tile_click_hlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3366 add_row_click_hlight(this, d.ini);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3367 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3368 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3370 make_row_tooltips(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3371
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3372 // append rectangle behind text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3373 row_labels.insert('rect').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3375 // append row label text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3376 row_labels.append('text').attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35).attr('text-anchor', 'end').style('font-size', params.labels.default_fs_row + 'px').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3377 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3378 }).attr('pointer-events', 'none').style('opacity', 0).style('cursor', 'default').transition().delay(text_delay).duration(text_delay).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3380 // change the size of the highlighting rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3381 row_labels.each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3382 var bbox = d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3383 d3.select(this).select('rect').attr('x', bbox.x).attr('y', 0).attr('width', bbox.width).attr('height', params.viz.y_scale.rangeBand()).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3384 var inst_hl = 'yellow';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3385 return inst_hl;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3386 }).style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3387 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3388 // highlight target genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3389 if (d.target === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3390 inst_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3391 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3392 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3393 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3394 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3396 // almost-deprecated row value bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3397 ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3398 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3400 row_labels.append('rect').classed('row_bars', true).attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3401 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3402 inst_value = params.labels.bar_scale_row(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3403 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3404 }).attr('x', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3405 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3406 inst_value = -params.labels.bar_scale_row(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3407 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3408 }).attr('height', params.viz.y_scale.rangeBand()).attr('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3409 return d.value > 0 ? params.matrix.bar_colors[0] : params.matrix.bar_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3410 }).attr('opacity', 0.4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3411 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3412 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3413
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3414 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3415 /* 51 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3416 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3418 module.exports = function (params, clicked_row, id_clicked_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3419 if (id_clicked_row != params.click_hlight_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3421 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3422 var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3423 var hlight_height = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3425 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3427 // // highlight selected row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3428 // d3.selectAll(params.root+' .row_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3429 // .select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3430 // d3.select(this)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3431 // .select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3432 // .style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3434 d3.select(clicked_row).append('rect').classed('click_hlight', true).classed('row_top_hlight', true).attr('width', params.viz.svg_dim.width).attr('height', hlight_height).attr('fill', params.matrix.hlight_color).attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3436 d3.select(clicked_row).append('rect').classed('click_hlight', true).classed('row_bottom_hlight', true).attr('width', params.viz.svg_dim.width).attr('height', hlight_height).attr('fill', params.matrix.hlight_color).attr('opacity', opacity_hlight).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3437 var tmp_translate_y = params.viz.y_scale.rangeBand() - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3438 return 'translate(0,' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3439 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3440 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3441 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3442 params.click_hlight_row = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3443 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3444 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3446 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3447 /* 52 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3448 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3450 var reposition_tile_highlight = __webpack_require__(53);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3451 var toggle_dendro_view = __webpack_require__(54);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3452 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3453 var get_previous_zoom = __webpack_require__(101);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3454 var calc_downsampled_levels = __webpack_require__(27);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3456 module.exports = function row_reorder(cgm, row_selection, inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3457
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3458 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3459 var prev_zoom = get_previous_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3461 if (prev_zoom.zoom_y === 1 && prev_zoom.zoom_x === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3463 params.viz.inst_order.row = 'custom';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3464 toggle_dendro_view(cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3465
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3466 d3.selectAll(params.root + ' .toggle_col_order .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3468 params.viz.run_trans = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3469
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3470 var mat = $.extend(true, {}, params.matrix.matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3471 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3472 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3473
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3474 // find the index of the row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3475 var tmp_arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3476 row_nodes.forEach(function (node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3477 tmp_arr.push(node.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3478 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3479
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3480 // find index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3481 inst_row = _.indexOf(tmp_arr, inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3483 // gather the values of the input genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3484 tmp_arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3485 col_nodes.forEach(function (node, index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3486 tmp_arr.push(mat[inst_row].row_data[index].value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3487 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3489 // sort the rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3490 var tmp_sort = d3.range(tmp_arr.length).sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3491 return tmp_arr[b] - tmp_arr[a];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3492 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3494 // resort cols (cols are reorderd by double clicking a row)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3495 params.viz.x_scale.domain(tmp_sort);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3496
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3497 // save to custom col order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3498 params.matrix.orders.custom_row = tmp_sort;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3499
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3500 // reorder matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3501 ////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3502 var t;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3503 if (params.network_data.links.length > params.matrix.def_large_matrix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3504 t = d3.select(params.root + ' .viz_svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3505 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3506 t = d3.select(params.root + ' .viz_svg').transition().duration(2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3507 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3509 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3511 // Move Col Labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3512 t.select('.col_zoom_container').selectAll('.col_label_text').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3513 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3514 return 'translate(' + params.viz.x_scale(inst_index) + ')rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3515 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3517 // reorder col_class groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3518 t.selectAll('.col_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3519 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3520 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3521 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3523 // reorder tiles in matrix (do not change row order)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3524 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3525 t.selectAll('.tile').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3526 return 'translate(' + params.viz.x_scale(d.pos_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3527 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3528
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3529 t.selectAll('.tile_up').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3530 return 'translate(' + params.viz.x_scale(d.pos_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3531 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3532
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3533 t.selectAll('.tile_dn').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3534 return 'translate(' + params.viz.x_scale(d.pos_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3535 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3536 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3538 // highlight selected row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3539 ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3540 // unhilight and unbold all columns (already unbolded earlier)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3541 d3.selectAll(params.root + ' .row_label_group').select('rect').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3542 // highlight column name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3543 d3.select(row_selection).select('rect').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3545 reposition_tile_highlight(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3546
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3547 // redefine x and y positions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3548 params.network_data.links.forEach(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3549 d.x = params.viz.x_scale(d.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3550 d.y = params.viz.y_scale(d.source);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3551 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3552
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3553 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3554
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3555 setTimeout(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3556 params.viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3557 }, 2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3558
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3559 // calculate downsmapling if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3560 if (params.viz.ds_num_levels > 0 && params.viz.ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3562 calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3564 // var zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3565 // var zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3566 // var make_all_rows = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3567 // // show_visible_area is also run with two_translate_zoom, but at that point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3568 // // the parameters were not updated and two_translate_zoom if only run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3569 // // if needed to reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3570 // show_visible_area(cgm, zooming_stopped, zooming_out, make_all_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3571 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3572 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3573 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3575 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3576 /* 53 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3577 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3578
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3579 module.exports = function (params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3581 // resize click hlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3582 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3583 // var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3585 var hlight_width = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3586 var hlight_height = rel_width_hlight * params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3587
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3588 // reposition tile highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3589 ////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3590 // top highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3591 d3.select(params.root + ' .top_hlight').attr('width', params.viz.x_scale.rangeBand()).attr('height', hlight_height).transition().duration(2500).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3592 return 'translate(' + params.viz.x_scale(params.matrix.click_hlight_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3593 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3594
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3595 // left highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3596 d3.select(params.root + ' .left_hlight').attr('width', hlight_width).attr('height', params.viz.y_scale.rangeBand() - hlight_height * 0.99).transition().duration(2500).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3597 return 'translate(' + params.viz.x_scale(params.matrix.click_hlight_x) + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3598 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3600 // right highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3601 d3.select(params.root + ' .right_hlight').attr('width', hlight_width).attr('height', params.viz.y_scale.rangeBand() - hlight_height * 0.99).transition().duration(2500).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3602 var tmp_translate = params.viz.x_scale(params.matrix.click_hlight_x) + params.viz.x_scale.rangeBand() - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3603 return 'translate(' + tmp_translate + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3604 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3606 // bottom highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3607 d3.select(params.root + ' .bottom_hlight').attr('width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3608 return params.viz.x_scale.rangeBand() - 1.98 * hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3609 }).attr('height', hlight_height).transition().duration(2500).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3610 var tmp_translate_x = params.viz.x_scale(params.matrix.click_hlight_x) + hlight_width * 0.99;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3611 var tmp_translate_y = params.viz.y_scale.rangeBand() - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3612 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3613 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3614 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3616 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3617 /* 54 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3618 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3619
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3620 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3622 module.exports = function toggle_dendro_view(cgm, inst_rc, wait_time = 1500) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3624 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3625
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3626 // row and col are reversed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3627 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3628 if (params.viz.inst_order.col === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3629 // the last true tells the viz that I'm chaning group size and not to
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3630 // delay the change in dendro
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3631 setTimeout(make_dendro_triangles, wait_time, cgm, 'row', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3632 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3633 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3635 if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3636 if (params.viz.inst_order.row === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3637 setTimeout(make_dendro_triangles, wait_time, cgm, 'col', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3638 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3639 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3641 if (params.viz.inst_order.row != 'clust' && params.viz.dendro_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3642 d3.selectAll(params.root + ' .col_dendro_group').style('opacity', 0).on('mouseover', null).on('mouseout', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3644 d3.select(params.root + ' .col_slider_group').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3646 // toggle crop buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3647 d3.selectAll(params.root + ' .col_dendro_crop_buttons').style('opacity', 0).on('mouseover', null).on('mouseout', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3648 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3649
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3650 if (params.viz.inst_order.col != 'clust' && params.viz.dendro_filter.row === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3652 d3.selectAll(params.root + ' .row_dendro_group').style('opacity', 0).on('mouseover', null).on('mouseout', null).on('click', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3654 d3.select(params.root + ' .row_slider_group').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3656 // toggle crop buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3657 d3.selectAll(params.root + ' .row_dendro_crop_buttons').style('opacity', 0).on('mouseover', null).on('mouseout', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3658 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3659 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3661 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3662 /* 55 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3663 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3665 var calc_row_dendro_triangles = __webpack_require__(56);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3666 var calc_col_dendro_triangles = __webpack_require__(57);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3667 var dendro_group_highlight = __webpack_require__(58);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3668 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3669 var make_dendro_crop_buttons = __webpack_require__(60);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3670 var make_cat_breakdown_graph = __webpack_require__(63);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3671
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3672 module.exports = function make_dendro_triangles(cgm, inst_rc, is_change_group = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3674 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3675
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3676 // in case sim_mat
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3677 if (inst_rc === 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3678 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3679 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3681 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3682 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3683 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3684 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3685 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3686 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3687
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3688 // orders are switched!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3689 if (params.viz.inst_order[other_rc] === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3690 d3.select(params.root + ' .' + inst_rc + '_slider_group').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3691 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3693 var dendro_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3695 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3696 dendro_info = calc_row_dendro_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3697 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3698 dendro_info = calc_col_dendro_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3699 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3700
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3701 if (d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_crop_buttons').empty() === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3702 make_dendro_crop_buttons(cgm, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3703 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3705 // constant dendrogram opacity
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3706 var inst_dendro_opacity = params.viz.dendro_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3708 function still_hovering(inst_selection, inst_data, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3709
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3710 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3712 // define where graph should be built
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3713 var inst_selector = params.viz.root_tips + '_' + inst_rc + '_dendro_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3714
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3715 // prevent mouseover from making multiple graphs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3716 if (d3.select(inst_selector + ' .cat_graph').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3718 if (params.viz.cat_info[inst_rc] !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3719 make_cat_breakdown_graph(params, inst_rc, inst_data, dendro_info[i], inst_selector, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3720 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3721 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3723 d3.selectAll(params.viz.root_tips + '_' + inst_rc + '_dendro_tip').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3724 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3725 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3727 var wait_before_tooltip = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3729 // remove any old dendro tooltips from this visualization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3730 d3.selectAll(cgm.params.viz.root_tips + '_' + inst_rc + '_dendro_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3731
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3732 // run transition rules
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3733 var run_transition;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3734 if (d3.selectAll(params.root + ' .' + inst_rc + '_dendro_group').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3735 run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3736 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3737 run_transition = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3738 d3.selectAll(params.root + ' .' + inst_rc + '_dendro_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3739 // d3.selectAll(params.root+' .dendro_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3740 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3742 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3743 var tmp_y_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3744 var tmp_x_offset = -5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3745 var dendro_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3746 // add root element to class
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3747 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3748 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_' + inst_rc + '_dendro_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3749
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3750 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3751 }).direction('nw').offset([tmp_y_offset, tmp_x_offset]).style('display', 'none').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3753 dendro_tip.html(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3754 var full_string = '<div class="cluster_info_container"></div>Click for cluster information <br>' + 'and additional options.';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3755 return full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3756 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3757
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3758 if (is_change_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3759 run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3760 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3762 var dendro_traps = d3.select(params.root + ' .' + inst_rc + '_dendro_container').selectAll('path').data(dendro_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3763 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3764 }).enter().append('path').style('opacity', 0).attr('class', inst_rc + '_dendro_group').style('fill', 'black');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3765
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3766 // draw triangles (shown as trapezoids)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3767 //////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3768 var start_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3769 var start_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3770 var mid_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3771 var mid_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3772 var final_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3773 var final_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3775 // row triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3776 dendro_traps.attr('d', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3778 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3779 // row triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3780 start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3781 start_y = d.pos_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3782 mid_x = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3783 mid_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3784 final_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3785 final_y = d.pos_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3786 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3787 // column triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3788 start_x = d.pos_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3789 start_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3790 mid_x = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3791 mid_y = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3792 final_x = d.pos_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3793 final_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3794 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3795
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3796 var output_string = 'M' + start_x + ',' + start_y + ', L' + mid_x + ', ' + mid_y + ', L' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3797 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3798 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3800 dendro_traps.on('mouseover', function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3802 // if (params.sim_mat){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3803 // inst_rc = 'both';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3804 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3806 // run instantly on mouseover
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3807 d3.select(this).classed('hovering', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3808
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3809 if (cgm.params.dendro_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3810 cgm.params.dendro_callback(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3811 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3813 // display tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3814 // this is needed for it to show in the right place and the opacity
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3815 // will be toggled to delay the tooltip for the user
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3816 d3.select(params.viz.root_tips + '_' + inst_rc + '_dendro_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3818 dendro_group_highlight(params, this, d, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3820 // show the tip (make sure it is displaying before it is shown)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3821 dendro_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3822
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3823 // set opacity to zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3824 d3.select(params.viz.root_tips + '_' + inst_rc + '_dendro_tip').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3826 // check if still hovering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3827 setTimeout(still_hovering, wait_before_tooltip, this, d, i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3828 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3829 if (params.viz.inst_order[other_rc] === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3830 d3.select(this).style('opacity', inst_dendro_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3831 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3833 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3835 d3.select(this).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3836 dendro_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3837 }).on('click', function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3839 $(params.root + ' .dendro_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3841 var group_string = d.all_names.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3842 d3.select(params.root + ' .dendro_info input').attr('value', group_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3843
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3844 var inst_selector = params.root + ' .dendro_info';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3846 // remove old graphs (modals are not within params.root)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3847 d3.selectAll('.dendro_info .cluster_info_container .cat_graph').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3849 if (params.viz.cat_info[inst_rc] !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3850 make_cat_breakdown_graph(params, inst_rc, d, dendro_info[i], inst_selector);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3851 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3853 if (cgm.params.dendro_click_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3854 cgm.params.dendro_click_callback(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3855 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3856 }).call(dendro_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3857
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3858 var triangle_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3859 if (params.viz.inst_order[other_rc] === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3860 triangle_opacity = inst_dendro_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3861 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3862 triangle_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3865 if (run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3866
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3867 d3.select(params.root + ' .' + inst_rc + '_dendro_container').selectAll('path').transition().delay(1000).duration(1000).style('opacity', triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3868 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3869
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3870 d3.select(params.root + ' .' + inst_rc + '_dendro_container').selectAll('path').style('opacity', triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3871 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3872 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3874 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3875 /* 56 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3876 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3877
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3878 module.exports = function calc_row_dendro_triangles(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3880 var triangle_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3881 var inst_level = params.group_level.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3882 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3883 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3885 _.each(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3886
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3887 // console.log('row_node '+d.name)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3889 var tmp_group = d.group[inst_level];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3890 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3891 var inst_top = params.viz.y_scale(inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3892 var inst_bot = inst_top + params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3894 if (_.has(triangle_info, tmp_group) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3895 triangle_info[tmp_group] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3896 triangle_info[tmp_group].name_top = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3897 triangle_info[tmp_group].name_bot = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3898 triangle_info[tmp_group].pos_top = inst_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3899 triangle_info[tmp_group].pos_bot = inst_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3900 triangle_info[tmp_group].pos_mid = (inst_top + inst_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3901 triangle_info[tmp_group].name = tmp_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3902 triangle_info[tmp_group].all_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3903 triangle_info[tmp_group].inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3904 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3906 triangle_info[tmp_group].all_names.push(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3907
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3908 if (inst_top < triangle_info[tmp_group].pos_top) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3909 triangle_info[tmp_group].name_top = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3910 triangle_info[tmp_group].pos_top = inst_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3911 triangle_info[tmp_group].pos_mid = (inst_top + triangle_info[tmp_group].pos_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3912 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3914 if (inst_bot > triangle_info[tmp_group].pos_bot) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3915 triangle_info[tmp_group].name_bot = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3916 triangle_info[tmp_group].pos_bot = inst_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3917 triangle_info[tmp_group].pos_mid = (triangle_info[tmp_group].pos_top + inst_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3918 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3919 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3920
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3921 var group_info = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3922
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3923 _.each(triangle_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3924 group_info.push(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3925 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3926
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3927 return group_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3928 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3929
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3930 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3931 /* 57 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3932 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3934 module.exports = function calc_col_dendro_triangles(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3935
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3936 var triangle_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3937 var inst_level = params.group_level.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3938 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3939 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3941 _.each(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3942
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3943 var tmp_group = d.group[inst_level];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3944 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3945 var inst_top = params.viz.x_scale(inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3946 var inst_bot = inst_top + params.viz.x_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3948 if (_.has(triangle_info, tmp_group) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3949 triangle_info[tmp_group] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3950 triangle_info[tmp_group].name_top = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3951 triangle_info[tmp_group].name_bot = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3952 triangle_info[tmp_group].pos_top = inst_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3953 triangle_info[tmp_group].pos_bot = inst_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3954 triangle_info[tmp_group].pos_mid = (inst_top + inst_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3955 triangle_info[tmp_group].name = tmp_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3956 triangle_info[tmp_group].all_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3957 triangle_info[tmp_group].inst_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3958 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3959
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3960 triangle_info[tmp_group].all_names.push(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3961
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3962 if (inst_top < triangle_info[tmp_group].pos_top) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3963 triangle_info[tmp_group].name_top = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3964 triangle_info[tmp_group].pos_top = inst_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3965 triangle_info[tmp_group].pos_mid = (inst_top + triangle_info[tmp_group].pos_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3966 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3968 if (inst_bot > triangle_info[tmp_group].pos_bot) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3969 triangle_info[tmp_group].name_bot = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3970 triangle_info[tmp_group].pos_bot = inst_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3971 triangle_info[tmp_group].pos_mid = (triangle_info[tmp_group].pos_top + inst_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3972 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3973 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3975 var group_info = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3977 _.each(triangle_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3978 group_info.push(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3979 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3981 return group_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3982 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3984 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3985 /* 58 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3986 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3988 var dendro_shade_bars = __webpack_require__(59);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3989
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3990 module.exports = function dendro_group_highlight(params, inst_selection, inst_data, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3992 // only make shadows if there is more than one crop button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3993 if (d3.selectAll(params.root + ' .' + inst_rc + '_dendro_crop_buttons')[0].length > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3994 setTimeout(still_hovering, 500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3995 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3996 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3997 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
3999 function still_hovering() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4001 // check that user is still hovering over dendrogram group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4002 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4003
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4004 // check that user is not using dendrogram slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4005 if (params.is_slider_drag === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4007 d3.select(inst_selection).style('opacity', 0.7);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4008
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4009 if (d3.select(params.viz.viz_svg).classed('running_update') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4010 make_shadow_bars();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4011 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4012 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4013 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4014 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4015
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4016 function make_shadow_bars() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4018 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4020 // row and col labling are reversed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4021 if (params.viz.inst_order.col === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4022 dendro_shade_bars(params, inst_selection, inst_rc, inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4023 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4024 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4026 // row and col labeling are reversed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4027 if (params.viz.inst_order.row === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4028 dendro_shade_bars(params, inst_selection, inst_rc, inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4029 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4030 } else if (inst_rc === 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4031
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4032 if (params.viz.inst_order.col === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4033 dendro_shade_bars(params, inst_selection, 'row', inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4034 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4035 if (params.viz.inst_order.row === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4036 dendro_shade_bars(params, inst_selection, 'col', inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4037 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4039 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4040 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4042 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4043 /* 59 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4044 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4046 module.exports = function dendro_shade_bars(params, inst_selection, inst_rc, inst_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4048 var inst_opacity = 0.2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4049 var bot_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4050
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4051 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4053 if (inst_rc == 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4054
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4055 // top shade
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4056 d3.select(params.root + ' .clust_group').append('rect').attr('width', params.viz.clust.dim.width + 'px').attr('height', inst_data.pos_top + 'px').attr('fill', 'black').classed('dendro_shadow', true).attr('opacity', inst_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4058 bot_height = params.viz.clust.dim.height - inst_data.pos_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4059 // bottom shade
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4060 d3.select(params.root + ' .clust_group').append('rect').attr('width', params.viz.clust.dim.width + 'px').attr('height', bot_height + 'px').attr('transform', 'translate(0,' + inst_data.pos_bot + ')').attr('fill', 'black').classed('dendro_shadow', true).attr('opacity', inst_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4061 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4062
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4063 // top shade
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4064 d3.select(params.root + ' .clust_group').append('rect').attr('width', inst_data.pos_top + 'px').attr('height', params.viz.clust.dim.height + 'px').attr('fill', 'black').classed('dendro_shadow', true).attr('opacity', inst_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4065
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4066 // bottom shade
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4067 bot_height = params.viz.clust.dim.width - inst_data.pos_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4068 d3.select(params.root + ' .clust_group').append('rect').attr('width', bot_height + 'px').attr('height', params.viz.clust.dim.height + 'px').attr('transform', 'translate(' + inst_data.pos_bot + ',0)').attr('fill', 'black').classed('dendro_shadow', true).attr('opacity', inst_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4069 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4070 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4072 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4073 /* 60 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4074 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4075
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4076 var calc_row_dendro_triangles = __webpack_require__(56);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4077 var calc_col_dendro_triangles = __webpack_require__(57);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4078 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4079 var dendro_group_highlight = __webpack_require__(58);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4080 var run_dendro_filter = __webpack_require__(61);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4081 var zoom_crop_triangles = __webpack_require__(62);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4082
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4083 module.exports = function make_dendro_crop_buttons(cgm, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4084
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4085 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4086
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4087 var button_opacity = params.viz.dendro_opacity * 0.60;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4089 // information needed to make dendro
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4090 var dendro_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4091 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4092 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4093 dendro_info = calc_row_dendro_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4094 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4095 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4096 dendro_info = calc_col_dendro_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4097 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4098 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4100 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4101 var tmp_y_offset = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4102 var tmp_x_offset = -5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4103 var dendro_crop_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4104 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4105 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_' + inst_rc + '_dendro_crop_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4106
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4107 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4108 }).direction('nw').style('display', 'none').offset([tmp_y_offset, tmp_x_offset]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4110 var wait_before_tooltip = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4111
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4112 d3.selectAll(params.viz.root_tips + '_' + inst_rc + '_dendro_crop_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4113 d3.selectAll(params.root + ' .' + inst_rc + '_dendro_crop_buttons').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4115 var icons;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4116 // position triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4117 var start_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4118 var start_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4119 var mid_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4120 var mid_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4121 var final_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4122 var final_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4124 // need to improve to account for zooming
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4125 var min_tri_height = 45;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4126 var scale_down_tri = 0.25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4127 var tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4128 var tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4129 var tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4131 // make crop buttons or undo buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4132 var button_class = inst_rc + '_dendro_crop_buttons';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4133 if (d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_group').classed('ran_filter') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4135 // Crop Triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4136 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4137 icons = d3.select(params.root + ' .' + inst_rc + '_dendro_icons_group').selectAll('path').data(dendro_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4138 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4139 }).enter().append('path').classed(button_class, true).attr('d', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4140
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4141 // redefine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4142 tri_height = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4143 tri_width = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4144
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4145 var tmp_height = d.pos_bot - d.pos_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4147 // Row Dendrogram Crop Triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4148 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4150 if (tmp_height < min_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4151 tri_height = tmp_height * scale_down_tri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4152 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4154 // pointing left
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4155 start_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4156 start_y = -tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4157 mid_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4158 mid_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4159 final_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4160 final_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4162 tri_dim = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4163
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4164 // Column Dendrogram Crop Triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4165 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4167 if (tmp_height < min_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4168 tri_width = tmp_height * scale_down_tri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4169 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4170
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4171 // pointing upward
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4172 start_x = -tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4173 start_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4174 mid_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4175 mid_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4176 final_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4177 final_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4179 tri_dim = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4180 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4181
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4182 // save triangle height
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4183 // d3.select(this)[0][0].__data__.tri_dim = tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4184 var data_key = '__data__';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4185 d3.select(this)[0][0][data_key].tri_dim = tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4187 var output_string = 'M' + start_x + ',' + start_y + ', L' + mid_x + ', ' + mid_y + ', L' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4188
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4189 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4190 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4192 dendro_crop_tip.html(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4193 var full_string = 'Click to crop cluster';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4194 return full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4195 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4196 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4198 // Undo Triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4199 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4200 icons = d3.select(params.root + ' .' + inst_rc + '_dendro_icons_group').selectAll('path').data(dendro_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4201 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4202 }).enter().append('path').classed(button_class, true).attr('d', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4204 // redefine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4205 tri_height = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4206 tri_width = 12;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4208 var tmp_height = d.pos_bot - d.pos_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4210 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4212 if (tmp_height < min_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4213 tri_height = tmp_height * scale_down_tri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4214 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4216 // pointing right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4217 start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4218 start_y = -tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4219 mid_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4220 mid_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4221 final_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4222 final_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4223 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4225 if (tmp_height < min_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4226 tri_width = tmp_height * scale_down_tri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4227 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4229 // pointing downward
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4230 start_x = -tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4231 start_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4232 mid_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4233 mid_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4234 final_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4235 final_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4236 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4238 // save triangle height
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4239 var data_key = '__data__';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4240 d3.select(this)[0][0][data_key].tri_dim = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4241
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4242 var output_string = 'M' + start_x + ',' + start_y + ', L' + mid_x + ', ' + mid_y + ', L' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4244 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4245 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4247 dendro_crop_tip.html(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4248 var full_string = 'Click to undo crop';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4249 return full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4250 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4251 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4252
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4253 icons.style('cursor', 'pointer').style('opacity', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4255 var inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4257 // if (d3.select(this).classed('hide_crop')){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4258 // inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4259 // } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4260 // inst_opacity = button_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4261 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4263 inst_opacity = button_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4264 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4265 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4266 var inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4267
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4268 var inst_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4269 var inst_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4271 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4272 inst_x = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4273 inst_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4274 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4275 inst_x = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4276 inst_y = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4277 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4278
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4279 inst_translate = 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4280 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4281 }).on('mouseover', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4282
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4283 d3.select(this).classed('hovering', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4284
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4285 dendro_crop_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4287 dendro_group_highlight(params, this, d, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4289 // display with zero opacity
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4290 d3.selectAll(params.viz.root_tips + '_' + inst_rc + '_dendro_crop_tip').style('opacity', 0).style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4292 // check if still hovering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4293 setTimeout(still_hovering, wait_before_tooltip, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4294 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4296 d3.select(this).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4298 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4299
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4300 d3.select(this).style('opacity', button_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4302 dendro_crop_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4303 }).on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4304
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4305 // give user visual cue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4306 d3.select(this).style('opacity', 0.9).transition().duration(1000).style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4308 // remove dendro shadows when clicked
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4309 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4310
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4311 /* filter using dendrogram */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4312 if (cgm.params.dendro_filter.row === false && cgm.params.dendro_filter.col === false && cgm.params.cat_filter.row === false && cgm.params.cat_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4314 // Run Filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4315 ///////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4317 // use class as 'global' variable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4318 d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_group').attr('transform', 'translate(0,0), scale(1,1)').classed('ran_filter', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4319
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4320 d3.select(cgm.params.root + ' .' + other_rc + '_dendro_icons_group').attr('transform', 'translate(0,0), scale(1,1)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4322 // do not display dendrogram slider if filtering has been run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4323 d3.select(cgm.params.root + ' .' + inst_rc + '_slider_group').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4325 // do not display other crop buttons since they are inactive
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4326 d3.select(cgm.params.root + ' .' + other_rc + '_dendro_icons_container').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4327
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4328 // do not display brush-crop button if performing dendro crop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4329 d3.select(cgm.params.root + ' .crop_button').style('opacity', 0.2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4330 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4332 // Undo Filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4333 ///////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4334 // use class as 'global' variable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4335 d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_group').attr('transform', 'translate(0,0), scale(1,1)').classed('ran_filter', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4336
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4337 d3.select(cgm.params.root + ' .' + other_rc + '_dendro_icons_group').attr('transform', 'translate(0,0), scale(1,1)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4338
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4339 if (params.viz.inst_order[other_rc] === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4340 // display slider when cropping has not been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4341 d3.select(cgm.params.root + ' .' + inst_rc + '_slider_group').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4344 // display other crop buttons when cropping has not been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4345 d3.select(cgm.params.root + ' .' + other_rc + '_dendro_icons_container').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4347 // display brush-crop button if not performing dendro crop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4348 d3.select(cgm.params.root + ' .crop_button').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4349 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4351 run_dendro_filter(cgm, d, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4352 }).call(dendro_crop_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4354 // ordering has been reversed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4355 if (params.viz.inst_order[other_rc] != 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4356 // do not display if not in cluster order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4357 d3.select(params.root + ' .' + inst_rc + '_dendro_icons_group').selectAll('path').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4358 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4359
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4360 function still_hovering(inst_selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4362 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4363 // increase opacity
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4364 d3.selectAll(params.viz.root_tips + '_' + inst_rc + '_dendro_crop_tip').style('opacity', 1).style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4365 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4366 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4368 zoom_crop_triangles(params, params.zoom_info, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4369 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4370
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4371 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4372 /* 61 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4373 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4375 module.exports = function run_dendro_filter(cgm, d, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4376
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4377 var names = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4379 if (cgm.params.dendro_filter.row === false && cgm.params.dendro_filter.col === false && cgm.params.cat_filter.row === false && cgm.params.cat_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4380
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4381 d3.select(cgm.params.root + ' .' + inst_rc + '_slider_group').style('opacity', 0.35).style('pointer-events', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4383 names[inst_rc] = d.all_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4385 var tmp_names = cgm.params.network_data[inst_rc + '_nodes_names'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4386
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4387 // keep a backup of the inst_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4388 var inst_row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4389 var inst_col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4390
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4391 cgm.filter_viz_using_names(names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4392
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4393 // overwrite with backup of original nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4394 cgm.params.inst_nodes.row_nodes = inst_row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4395 cgm.params.inst_nodes.col_nodes = inst_col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4396
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4397 d3.selectAll(cgm.params.root + ' .dendro_shadow').transition().duration(1000).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4398
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4399 // keep the names of all the nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4400 cgm.params.dendro_filter[inst_rc] = tmp_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4401
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4402 /* reset filter */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4403 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4405 names[inst_rc] = cgm.params.dendro_filter[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4406
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4407 cgm.filter_viz_using_names(names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4408 cgm.params.dendro_filter[inst_rc] = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4409 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4410 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4412 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4413 /* 62 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4414 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4416 module.exports = function zoom_crop_triangles(params, zoom_info, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4418 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4419
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4420 // transform icons (undo zoom on triangles)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4421 d3.select(params.root + ' .row_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4422 var inst_x = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4423 var inst_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4424 var curr_zoom = zoom_info.zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4425 var tri_dim = d3.select(this).data()[0].tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4426 var inst_zoom = constrain_zoom(curr_zoom, tri_dim);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4427 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(1, ' + 1 / inst_zoom + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4428 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4429 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4431 // transform icons (undo zoom on triangles)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4432 d3.select(params.root + ' .col_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4433 var inst_x = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4434 var inst_y = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4435 var curr_zoom = zoom_info.zoom_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4436 var tri_dim = d3.select(this).data()[0].tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4437 var inst_zoom = constrain_zoom(curr_zoom, tri_dim);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4438 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(' + 1 / inst_zoom + ', 1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4439 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4440 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4442 function constrain_zoom(curr_zoom, tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4443 var inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4444 var default_tri_height = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4445 if (tri_height * curr_zoom < default_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4446 inst_zoom = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4447 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4448 var max_zoom = default_tri_height / tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4449 inst_zoom = curr_zoom / max_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4450 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4451 return inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4452 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4453 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4455 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4456 /* 63 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4457 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4459 var calc_cat_cluster_breakdown = __webpack_require__(64);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4461 module.exports = function make_cat_breakdown_graph(params, inst_rc, inst_data, dendro_info, selector, tooltip = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4463 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4464 This function is used to make the category breakdown graphs for tooltips on
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4465 dendrogram mousover and on dendrogram click modal popup.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4466 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4468 // in case sim_mat
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4469 if (inst_rc === 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4470 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4471 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4473 var cat_breakdown = calc_cat_cluster_breakdown(params, inst_data, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4474
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4475 if (cat_breakdown.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4477 // put cluster information in dendro_tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4478 ///////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4479 var cluster_info_container = d3.select(selector + ' .cluster_info_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4481 // loop through cat_breakdown data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4482 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4483 var paragraph_string = '<p>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4484 var width = 370;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4485 var bar_offset = 23;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4486 var bar_height = 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4487 var max_string_length = 25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4488 var bar_width = 180;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4489 var title_height = 27;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4490 var shift_tooltip_left = 177;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4492 // these are the indexes where the number-of-nodes and the number of downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4493 // nodes are stored
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4494 var num_nodes_index = 4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4495 var num_nodes_ds_index = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4496 var offset_ds_count = 150;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4497 var binom_pval_index = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4499 var is_downsampled = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4500 if (cat_breakdown[0].bar_data[0][num_nodes_ds_index] != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4501 width = width + 100;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4502 shift_tooltip_left = shift_tooltip_left + offset_ds_count - 47;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4503 is_downsampled = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4504 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4505
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4506 // the index that will be used to generate the bars (will be different if
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4507 // downsampled)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4508 var cluster_total = dendro_info.all_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4509 var bars_index = num_nodes_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4510 if (is_downsampled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4511 bars_index = num_nodes_ds_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4513 // calculate the total number of nodes in downsampled case
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4514 var inst_bar_data = cat_breakdown[0].bar_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4515 cluster_total = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4516 _.each(inst_bar_data, function (tmp_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4517 cluster_total = cluster_total + tmp_data[num_nodes_ds_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4518 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4519 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4521 // limit on the number of category types shown
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4522 var max_cats = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4523 // limit the number of bars shown
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4524 var max_bars = 25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4525
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4526 // calculate height needed for svg based on cat_breakdown data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4527 var svg_height = 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4528 _.each(cat_breakdown.slice(0, max_cats), function (tmp_break) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4529 var num_bars = tmp_break.bar_data.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4530 if (num_bars > max_bars) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4531 num_bars = max_bars;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4532 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4533 svg_height = svg_height + title_height * (num_bars + 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4534 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4536 // Cluster Information Title (for tooltip only not modal)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4537 if (tooltip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4538 cluster_info_container.append('text').text('Cluster Information');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4539 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4540
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4541 var main_dendro_svg = cluster_info_container.append('div').style('margin-top', '5px').classed('cat_graph', true).append('svg').style('height', svg_height + 'px').style('width', width + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4542
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4543 // make background
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4544 main_dendro_svg.append('rect').classed('cat_background', true).attr('height', svg_height + 'px').attr('width', width + 'px').attr('fill', 'white').attr('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4546 // the total amout to shift down the next category
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4547 var shift_down = title_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4549 // limit the category-types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4550 cat_breakdown = cat_breakdown.slice(0, max_cats);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4552 _.each(cat_breakdown, function (cat_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4553
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4554 var max_bar_value = cat_data.bar_data[0][bars_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4556 // offset the count column based on how large the counts are
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4557 var digit_offset_scale = d3.scale.linear().domain([0, 100000]).range([20, 30]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4558
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4559 // only keep the top max_bars categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4560 cat_data.bar_data = cat_data.bar_data.slice(0, max_bars);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4562 cluster_info_container.style('margin-bottom', '5px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4564 var cat_graph_group = main_dendro_svg.append('g').classed('cat_graph_group', true).attr('transform', 'translate(10, ' + shift_down + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4565
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4566 // shift down based on number of bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4567 shift_down = shift_down + title_height * (cat_data.bar_data.length + 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4569 var inst_title = cat_data.type_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4570 // ensure that title is not too long
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4571 if (inst_title.length >= max_string_length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4572 inst_title = inst_title.slice(0, max_string_length) + '..';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4573 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4575 // make title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4576 cat_graph_group.append('text').classed('cat_graph_title', true).text(inst_title).style('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').style('font-weight', 800);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4578 // shift the position of the numbers based on the size of the number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4579 var count_offset = digit_offset_scale(max_bar_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4581 // Count Title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4582 cat_graph_group.append('text').text('Count').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4583 var inst_x = bar_width + count_offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4584 var inst_translate = 'translate(' + inst_x + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4585 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4586 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4587
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4588 // Percentage Title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4589 cat_graph_group.append('text').text('Pct').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4590 var inst_x = bar_width + count_offset + 60;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4591 var inst_translate = 'translate(' + inst_x + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4592 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4593 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4594
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4595 // Percentage Title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4596 cat_graph_group.append('text').text('P-val').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4597 var inst_x = bar_width + count_offset + 115;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4598 var inst_translate = 'translate(' + inst_x + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4599 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4600 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4601
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4602 // Count Downsampled Title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4603 if (is_downsampled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4604 cat_graph_group.append('text').text('Clusters').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4605 var inst_x = bar_width + offset_ds_count;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4606 var inst_translate = 'translate(' + inst_x + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4607 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4608 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4609 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4611 var line_y = 4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4612 cat_graph_group.append('line').attr('x1', 0).attr('x2', bar_width).attr('y1', line_y).attr('y2', line_y).attr('stroke', 'blue').attr('stroke-width', 1).attr('opacity', 1.0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4614 var cat_bar_container = cat_graph_group.append('g').classed('cat_bar_container', true).attr('transform', 'translate(0, 10)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4616 // make bar groups (hold bar and text)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4617 var cat_bar_groups = cat_bar_container.selectAll('g').data(cat_data.bar_data).enter().append('g').attr('transform', function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4618 var inst_y = i * bar_offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4619 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4620 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4622 // bar length is max when all nodes in cluster are of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4623 // a single cat
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4624 var bar_scale = d3.scale.linear().domain([0, max_bar_value]).range([0, bar_width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4625
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4626 // make bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4627 cat_bar_groups.append('rect').attr('height', bar_height + 'px').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4628 var inst_width = bar_scale(d[bars_index]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4629 return inst_width + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4630 }).attr('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4631 // cat color is stored in the third element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4632 return d[3];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4633 }).attr('opacity', params.viz.cat_colors.opacity).attr('stroke', 'grey').attr('stroke-width', '0.5px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4635 // make bar labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4636 cat_bar_groups.append('text').classed('bar_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4637 var inst_text = d[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4638 if (inst_text.indexOf(super_string) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4639 inst_text = inst_text.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4640 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4641 if (inst_text.indexOf(paragraph_string) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4642 // required for Enrichr category names (needs improvements)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4643 inst_text = inst_text.split(paragraph_string)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4644 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4645 // ensure that bar name is not too long
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4646 if (inst_text.length >= max_string_length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4647 inst_text = inst_text.slice(0, max_string_length) + '..';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4648 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4649 return inst_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4650 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4651 return 'translate(5, ' + 0.75 * bar_height + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4652 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'right');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4654 // Count/Pct Rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4655 /////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4656 var shift_count_num = 35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4658 cat_bar_groups.append('text').classed('count_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4659 var inst_count = d[bars_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4660 inst_count = inst_count.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4661 return String(inst_count);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4662 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4663 var inst_x = bar_width + count_offset + shift_count_num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4664 var inst_y = 0.75 * bar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4665 return 'translate(' + inst_x + ', ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4666 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4667
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4668 cat_bar_groups.append('text').classed('count_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4669 // calculate the percentage relative to the current cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4670 var inst_count = d[bars_index] / cluster_total * 100;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4671 inst_count = Math.round(inst_count * 10) / 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4672 inst_count = inst_count.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4673 return String(inst_count);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4674 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4675 var inst_x = bar_width + count_offset + shift_count_num + 47;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4676 var inst_y = 0.75 * bar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4677 return 'translate(' + inst_x + ', ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4678 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4679
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4680 // Binomial Test Pvals
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4681 cat_bar_groups.append('text').classed('count_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4682 // calculate the percentage relative to the current cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4683 var inst_count = d[binom_pval_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4685 if (inst_count < 0.1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4686 inst_count = parseFloat(inst_count.toPrecision(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4687 inst_count = inst_count.toExponential();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4688 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4689 inst_count = parseFloat(inst_count.toPrecision(2));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4690 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4691
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4692 // inst_count = inst_count.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4693 return inst_count;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4694 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4695 var inst_x = bar_width + count_offset + shift_count_num + 112;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4696 var inst_y = 0.75 * bar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4697 return 'translate(' + inst_x + ', ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4698 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4700 if (is_downsampled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4701 cat_bar_groups.append('text').classed('count_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4702 return String(d[num_nodes_index].toLocaleString());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4703 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4704 // downsampled cluster numbers are smaller and need less flexible offsetting
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4705 var inst_x = bar_width + shift_count_num + offset_ds_count + 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4706 var inst_y = 0.75 * bar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4707 return 'translate(' + inst_x + ', ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4708 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4709 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4710 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4712 // reposition tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4713 /////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4714 if (tooltip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4716 var dendro_tip = d3.select(selector);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4717 var old_top = dendro_tip.style('top').split('.px')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4718 var old_left = dendro_tip.style('left').split('.px')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4719 var shift_top = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4720 var shift_left = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4722 // shifting
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4723 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4725 // rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4726 //////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4727 shift_top = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4728 shift_left = shift_tooltip_left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4729
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4730 // // prevent graph from being too high
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4731 // if (dendro_info.pos_top < svg_height){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4732 // // do not shift position of category breakdown graph
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4733 // // shift_top = -(svg_height + (dendro_info.pos_mid - dendro_info.pos_top)/2) ;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4734 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4735 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4737 // columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4738 //////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4739 shift_top = svg_height + 32;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4740 shift_left = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4741 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4742
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4743 dendro_tip.style('top', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4744 var new_top = String(parseInt(old_top, 10) - shift_top) + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4745 return new_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4746 }).style('left', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4747 var new_left = String(parseInt(old_left, 10) - shift_left) + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4748 return new_left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4749 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4750 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4751 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4752 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4753
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4754 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4755 /* 64 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4756 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4757
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4758 var binom_test = __webpack_require__(65);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4760 module.exports = function calc_cat_cluster_breakdown(params, inst_data, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4761 // Category-breakdown of dendrogram-clusters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4762 /////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4763 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4764 1. get information for nodes in cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4765 2. find category-types that are string-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4766 3. count instances of each category name for each category-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4767 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4768
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4769 // in case sim_mat
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4770 if (inst_rc === 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4771 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4772 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4774 // 1: get information for nodes in cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4775 ///////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4776
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4777 // names of nodes in cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4778 var clust_names = inst_data.all_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4779 // array of nodes in the cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4780 var clust_nodes = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4781 var all_nodes = params.network_data[inst_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4782 var num_in_clust_index = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4783 var is_downsampled = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4785 var inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4786 _.each(all_nodes, function (inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4787
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4788 inst_name = inst_node.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4790 if (clust_names.indexOf(inst_name) >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4791 clust_nodes.push(inst_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4792 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4793 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4795 // 2: find category-types that are string-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4796 ///////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4797
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4798 var cat_breakdown = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4800 if (params.viz.cat_info[inst_rc] !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4802 var inst_cat_info = params.viz.cat_info[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4804 // tmp list of all categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4805 var tmp_types_index = _.keys(inst_cat_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4806 // this will hold the indexes of string-type categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4807 var cat_types_index = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4808
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4809 // get category names (only include string-type categories)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4810 var cat_types_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4811 var type_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4812 var inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4813 var cat_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4814 for (var i = 0; i < tmp_types_index.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4816 cat_index = 'cat-' + String(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4818 if (params.viz.cat_info[inst_rc][cat_index].type === 'cat_strings') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4819 type_name = params.viz.cat_names[inst_rc][cat_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4820 cat_types_names.push(type_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4821 cat_types_index.push(cat_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4822 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4824 // save number in clust category index if found
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4825 if (params.viz.cat_names[inst_rc][cat_index] === 'number in clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4826 num_in_clust_index = cat_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4827 is_downsampled = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4828 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4829 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4830 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4831
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4832 var tmp_run_count = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4833 var inst_breakdown = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4834 var bar_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4835 var radix_param = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4837 // sort by actual counts (rather than cluster counts)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4838 var sorting_index = 4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4839 if (is_downsampled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4840 sorting_index = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4841 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4842
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4843 var no_title_given;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4844 if (type_name === cat_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4845 no_title_given = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4846 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4847 no_title_given = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4848 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4850 if (cat_types_names.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4851
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4852 // 3: count instances of each category name for each category-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4853 var cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4854 var num_in_clust = clust_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4855
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4856 // use the cat_hist to get the number of instances of this category in
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4857 // all rows/cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4858 // params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4859
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4860 _.each(cat_types_index, function (cat_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4861
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4862 inst_index = cat_index.split('-')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4863 type_name = cat_types_names[inst_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4865 if (no_title_given) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4866 if (cat_index.indexOf('-') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4867 var tmp_num = parseInt(cat_index.split('-')[1], radix_param) + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4868 type_name = 'Category ' + String(tmp_num);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4869 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4870 // backup behavior
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4871 type_name = 'Category';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4872 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4873 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4875 tmp_run_count[type_name] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4877 // loop through the nodes and keep a running count of categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4878 _.each(clust_nodes, function (tmp_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4880 cat_name = tmp_node[cat_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4881
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4882 if (cat_name.indexOf(': ') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4883 cat_name = cat_name.split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4884 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4885
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4886 if (cat_name in tmp_run_count[type_name]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4887 tmp_run_count[type_name][cat_name].num_nodes = tmp_run_count[type_name][cat_name].num_nodes + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4889 if (num_in_clust_index != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4890 tmp_run_count[type_name][cat_name].num_nodes_ds = tmp_run_count[type_name][cat_name].num_nodes_ds + parseInt(tmp_node[num_in_clust_index].split(': ')[1], radix_param);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4891 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4892 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4894 tmp_run_count[type_name][cat_name] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4895 tmp_run_count[type_name][cat_name].num_nodes = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4896 if (num_in_clust_index != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4897 tmp_run_count[type_name][cat_name].num_nodes_ds = parseInt(tmp_node[num_in_clust_index].split(': ')[1], radix_param);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4898 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4899 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4900 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4901
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4902 inst_breakdown = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4903 inst_breakdown.type_name = type_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4904 inst_breakdown.num_in_clust = num_in_clust;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4906 // sort cat info in cat_breakdown
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4907 bar_data = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4908 var bar_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4909 var cat_title_and_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4910 var inst_run_count = tmp_run_count[type_name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4912 for (var inst_cat in inst_run_count) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4914 var tot_num_cat = params.viz.cat_info[inst_rc][cat_index].cat_hist[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4915 var total_nodes = params.network_data[inst_rc + '_nodes'].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4916 var expect_prob = tot_num_cat / total_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4918 // if no cat-title given
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4919 if (no_title_given) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4920 cat_title_and_name = inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4921 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4922 cat_title_and_name = type_name + ': ' + inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4923 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4925 // num_nodes: number of cat-nodes drawn in cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4926 var num_nodes = inst_run_count[inst_cat].num_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4928 var actual_k = num_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4929 var pval = binom_test(actual_k, num_in_clust, expect_prob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4930
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4931 // working on tracking the 'real' number of nodes, which is only different
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4932 // if downsampling has been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4933 if (_.has(inst_run_count[inst_cat], 'num_nodes_ds')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4934 var num_nodes_ds = inst_run_count[inst_cat].num_nodes_ds;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4935 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4936 num_nodes_ds = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4937 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4938
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4939 bar_color = params.viz.cat_colors[inst_rc][cat_index][cat_title_and_name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4941 bar_data.push([cat_index, cat_title_and_name, inst_run_count[inst_cat], bar_color, num_nodes, num_nodes_ds, pval]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4942 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4943
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4944 bar_data.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4945 return b[sorting_index] - a[sorting_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4946 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4948 inst_breakdown.bar_data = bar_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4949
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4950 cat_breakdown.push(inst_breakdown);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4951 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4952 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4953 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4954
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4955 return cat_breakdown;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4956 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4958 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4959 /* 65 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4960 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4961
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4962
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4963 // Load the math.js core
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4964 // Create a new, empty math.js instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4965 // It will only contain methods `import` and `config`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4966 // math.import(require('mathjs/lib/type/fraction'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4967 var p_dict = __webpack_require__(66);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4968 var core = __webpack_require__(67);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4969 var math = core.create();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4970
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4971 math.import(__webpack_require__(79));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4972
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4973 module.exports = function binom_test(actual_k, n, p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4975 var fact = math.factorial;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4976 var pval;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4978 function binom_dist(k, n, p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4979 var bin_coeff = fact(n) / (fact(k) * fact(n - k));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4980 p = bin_coeff * (Math.pow(p, k) * Math.pow(1 - p, n - k));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4981 return p;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4982 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4984 function my_binom_test_2(actual_k, n, p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4985 var cp = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4986 var k;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4987 var dp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4988 for (var inst_k = actual_k; inst_k < n + 1; inst_k++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4989 k = inst_k;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4990 dp = binom_dist(k, n, p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4991 cp = cp + dp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4992 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4994 return cp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4995 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4997 // look up p-value from z-score using table
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4998 function binom_prop_table(actual_k, n, p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
4999
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5000 // expected average number of successes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5001 var mu = n * p;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5002
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5003 // standard deviation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5004 var sigma = Math.sqrt(n * p * (1 - p));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5006 // how many standard deviations is the actual_k away
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5007 // from the expected value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5008 var z = (actual_k - mu) / sigma;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5010 var z_vals = p_dict.z;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5011 var p_vals = p_dict.p;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5012
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5013 var found_index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5014 var found = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5015
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5016 for (var index = 0; index < z_vals.length; index++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5017 var inst_z = z_vals[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5018
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5019 // increasing inst_z until z is less than inst_z
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5020 if (z < inst_z && found === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5021 found_index = index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5022 found = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5023 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5024 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5026 // give it the smallest p-val if the z-score was larger than
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5027 // any in the table
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5028 if (found_index === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5029 found_index = z_vals.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5030 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5031 pval = p_vals[found_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5033 return pval;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5034 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5035
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5036 // calculate pval
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5037 pval = my_binom_test_2(actual_k, n, p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5038 if (isNaN(pval)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5039 pval = binom_prop_table(actual_k, n, p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5040 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5042 return pval;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5043 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5045 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5046 /* 66 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5047 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5049 module.exports = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5050 "p": [0.5, 0.48006119416162751, 0.46017216272297101, 0.4403823076297575, 0.42074029056089696, 0.4012936743170763, 0.38208857781104733, 0.3631693488243809, 0.34457825838967582, 0.32635522028791997, 0.30853753872598688, 0.29115968678834636, 0.27425311775007355, 0.25784611080586473, 0.24196365222307303, 0.22662735237686821, 0.21185539858339669, 0.19766254312269238, 0.18406012534675947, 0.17105612630848183, 0.15865525393145707, 0.14685905637589591, 0.13566606094638267, 0.12507193563715024, 0.11506967022170828, 0.10564977366685535, 0.096800484585610358, 0.088507991437401956, 0.080756659233771066, 0.073529259609648304, 0.066807201268858071, 0.060570758002059008, 0.054799291699557974, 0.049471468033648075, 0.044565462758543006, 0.040059156863817086, 0.035930319112925789, 0.032156774795613713, 0.028716559816001783, 0.025588059521638611, 0.022750131948179195, 0.020182215405704383, 0.017864420562816542, 0.015777607391090499, 0.013903447513498595, 0.012224472655044696, 0.010724110021675795, 0.0093867055348385662, 0.0081975359245961138, 0.0071428107352714152, 0.0062096653257761323, 0.0053861459540666843, 0.0046611880237187467, 0.0040245885427583027, 0.0034669738030406647, 0.0029797632350545551, 0.002555130330427929, 0.0021859614549132405, 0.0018658133003840339, 0.0015888696473648667, 0.0013498980316300933, 0.0011442068310226977, 0.00096760321321835631, 0.00081635231282856037, 0.00068713793791584708, 0.00057702504239076592, 0.00048342414238377663, 0.0004040578018640207, 0.00033692926567687988, 0.00028029327681617744, 0.00023262907903552502, 0.00019261557563563279, 0.00015910859015753364, 0.00013112015442048433, 0.00010779973347738823, 8.8417285200803773e-05, 7.2348043925119787e-05, 5.9058912418922374e-05, 4.8096344017602614e-05, 3.9075596597787456e-05, 3.1671241833119863e-05, 2.5608816474041489e-05, 2.0657506912546683e-05, 1.6623763729652213e-05, 1.334574901590631e-05, 1.0688525774934402e-05, 8.5399054709917942e-06, 6.8068765993340312e-06, 5.4125439077038407e-06, 4.293514469971858e-06, 3.3976731247300535e-06, 2.6822957796388472e-06, 2.1124547025028419e-06, 1.6596751443714555e-06, 1.3008074539172771e-06, 1.0170832425687032e-06, 7.9332815197558919e-07, 6.1730737200919249e-07, 4.7918327659031855e-07, 3.7106740796333271e-07, 2.8665157187919333e-07, 2.2090503226954194e-07, 1.6982674071475937e-07, 1.3024322953320117e-07, 9.9644263169334701e-08, 7.6049605164887e-08, 5.7901340399645569e-08, 4.3977115940058689e-08, 3.3320448485428448e-08, 2.518491005446105e-08, 1.8989562465887681e-08, 1.4283479893922661e-08, 1.0717590258310852e-08, 8.0223918506634739e-09, 5.9903714010635304e-09, 4.4621724539016108e-09, 3.3157459783261365e-09, 2.4578650618080152e-09, 1.8175078630994235e-09, 1.3407124440918662e-09, 9.8658764503769458e-10, 7.2422917051376055e-10, 5.303423262948808e-10, 3.8741473466756636e-10, 2.8231580370432682e-10, 2.0522634252189396e-10, 1.4882282217622966e-10, 1.0765746385121517e-10, 7.7688475817097756e-11, 5.592507575942645e-11, 4.0160005838590881e-11, 2.8768541736043109e-11, 2.055788909399508e-11, 1.4654650977302715e-11, 1.0420976987965154e-11, 7.3922577780177942e-12, 5.2309575441445253e-12, 3.6924994272355614e-12, 2.600126965638173e-12, 1.8264310619769611e-12, 1.279812543885835e-12, 8.9458895587698439e-13, 6.23784446333152e-13, 4.3388950271780343e-13, 3.0106279811174218e-13, 2.0838581586720548e-13, 1.4388386381575764e-13, 9.9103427495475088e-14, 6.8092248906200155e-14, 4.6670115887190274e-14, 3.1908916729108844e-14, 2.1762912097085575e-14, 1.4806537490047908e-14, 1.0048965656526223e-14, 6.8033115407739012e-15, 4.5946274357785623e-15, 3.095358771958668e-15, 2.0801863521393674e-15, 1.394517146659261e-15, 9.3255757716812045e-16, 6.2209605742717405e-16, 4.1397018162731219e-16, 2.7479593923982212e-16, 1.8196213635266084e-16, 1.2019351542735647e-16, 7.9197263146424757e-17, 5.2055697448902465e-17, 3.4131483264581459e-17, 2.232393197288031e-17, 1.456514112590909e-17, 9.4795348222032499e-18, 6.1544255908503949e-18, 3.985804962848151e-18, 2.5749715380118873e-18, 1.6594208699647519e-18, 1.0667637375474856e-18, 6.840807685935497e-19, 4.3759647993090167e-19, 2.7923343749396233e-19, 1.7774117841455144e-19, 1.1285884059538324e-19, 7.1484170112696837e-20, 4.516591491435403e-20, 2.8466774084602088e-20, 1.7897488120140146e-20, 1.1224633591327901e-20, 7.0222842404415411e-21, 4.3823862990664603e-21, 2.7281535713460872e-21, 1.6941535024881097e-21, 1.0494515075362604e-21, 6.4848144530772079e-22, 3.9972212057261192e-22, 2.4577864834723153e-22, 1.5074931688101589e-22, 9.2234135249393526e-23, 5.6292823113765143e-23, 3.4271987941135974e-23, 2.0813752194932085e-23, 1.2609160670206559e-23],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5051 "z": [0.0, 0.050000000000000003, 0.10000000000000001, 0.15000000000000002, 0.20000000000000001, 0.25, 0.30000000000000004, 0.35000000000000003, 0.40000000000000002, 0.45000000000000001, 0.5, 0.55000000000000004, 0.60000000000000009, 0.65000000000000002, 0.70000000000000007, 0.75, 0.80000000000000004, 0.85000000000000009, 0.90000000000000002, 0.95000000000000007, 1.0, 1.05, 1.1000000000000001, 1.1500000000000001, 1.2000000000000002, 1.25, 1.3, 1.3500000000000001, 1.4000000000000001, 1.4500000000000002, 1.5, 1.55, 1.6000000000000001, 1.6500000000000001, 1.7000000000000002, 1.75, 1.8, 1.8500000000000001, 1.9000000000000001, 1.9500000000000002, 2.0, 2.0500000000000003, 2.1000000000000001, 2.1499999999999999, 2.2000000000000002, 2.25, 2.3000000000000003, 2.3500000000000001, 2.4000000000000004, 2.4500000000000002, 2.5, 2.5500000000000003, 2.6000000000000001, 2.6500000000000004, 2.7000000000000002, 2.75, 2.8000000000000003, 2.8500000000000001, 2.9000000000000004, 2.9500000000000002, 3.0, 3.0500000000000003, 3.1000000000000001, 3.1500000000000004, 3.2000000000000002, 3.25, 3.3000000000000003, 3.3500000000000001, 3.4000000000000004, 3.4500000000000002, 3.5, 3.5500000000000003, 3.6000000000000001, 3.6500000000000004, 3.7000000000000002, 3.75, 3.8000000000000003, 3.8500000000000001, 3.9000000000000004, 3.9500000000000002, 4.0, 4.0499999999999998, 4.1000000000000005, 4.1500000000000004, 4.2000000000000002, 4.25, 4.2999999999999998, 4.3500000000000005, 4.4000000000000004, 4.4500000000000002, 4.5, 4.5499999999999998, 4.6000000000000005, 4.6500000000000004, 4.7000000000000002, 4.75, 4.8000000000000007, 4.8500000000000005, 4.9000000000000004, 4.9500000000000002, 5.0, 5.0500000000000007, 5.1000000000000005, 5.1500000000000004, 5.2000000000000002, 5.25, 5.3000000000000007, 5.3500000000000005, 5.4000000000000004, 5.4500000000000002, 5.5, 5.5500000000000007, 5.6000000000000005, 5.6500000000000004, 5.7000000000000002, 5.75, 5.8000000000000007, 5.8500000000000005, 5.9000000000000004, 5.9500000000000002, 6.0, 6.0500000000000007, 6.1000000000000005, 6.1500000000000004, 6.2000000000000002, 6.25, 6.3000000000000007, 6.3500000000000005, 6.4000000000000004, 6.4500000000000002, 6.5, 6.5500000000000007, 6.6000000000000005, 6.6500000000000004, 6.7000000000000002, 6.75, 6.8000000000000007, 6.8500000000000005, 6.9000000000000004, 6.9500000000000002, 7.0, 7.0500000000000007, 7.1000000000000005, 7.1500000000000004, 7.2000000000000002, 7.25, 7.3000000000000007, 7.3500000000000005, 7.4000000000000004, 7.4500000000000002, 7.5, 7.5500000000000007, 7.6000000000000005, 7.6500000000000004, 7.7000000000000002, 7.75, 7.8000000000000007, 7.8500000000000005, 7.9000000000000004, 7.9500000000000002, 8.0, 8.0500000000000007, 8.0999999999999996, 8.1500000000000004, 8.2000000000000011, 8.25, 8.3000000000000007, 8.3499999999999996, 8.4000000000000004, 8.4500000000000011, 8.5, 8.5500000000000007, 8.5999999999999996, 8.6500000000000004, 8.7000000000000011, 8.75, 8.8000000000000007, 8.8499999999999996, 8.9000000000000004, 8.9500000000000011, 9.0, 9.0500000000000007, 9.0999999999999996, 9.1500000000000004, 9.2000000000000011, 9.25, 9.3000000000000007, 9.3499999999999996, 9.4000000000000004, 9.4500000000000011, 9.5, 9.5500000000000007, 9.6000000000000014, 9.6500000000000004, 9.7000000000000011, 9.75, 9.8000000000000007, 9.8500000000000014, 9.9000000000000004, 9.9500000000000011]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5052 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5054 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5055 /* 67 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5056 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5058 module.exports = __webpack_require__(68);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5060 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5061 /* 68 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5062 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5063
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5064 var isFactory = __webpack_require__(69).isFactory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5065 var deepExtend = __webpack_require__(69).deepExtend;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5066 var typedFactory = __webpack_require__(70);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5067 var emitter = __webpack_require__(74);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5069 var importFactory = __webpack_require__(76);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5070 var configFactory = __webpack_require__(78);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5072 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5073 * Math.js core. Creates a new, empty math.js instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5074 * @param {Object} [options] Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5075 * {number} epsilon
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5076 * Minimum relative difference between two
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5077 * compared values, used by all comparison functions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5078 * {string} matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5079 * A string 'Matrix' (default) or 'Array'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5080 * {string} number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5081 * A string 'number' (default), 'BigNumber', or 'Fraction'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5082 * {number} precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5083 * The number of significant digits for BigNumbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5084 * Not applicable for Numbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5085 * {boolean} predictable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5086 * Predictable output type of functions. When true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5087 * output type depends only on the input types. When
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5088 * false (default), output type can vary depending
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5089 * on input values. For example `math.sqrt(-2)`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5090 * returns `NaN` when predictable is false, and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5091 * returns `complex('2i')` when true.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5092 * @returns {Object} Returns a bare-bone math.js instance containing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5093 * functions:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5094 * - `import` to add new functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5095 * - `config` to change configuration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5096 * - `on`, `off`, `once`, `emit` for events
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5097 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5098 exports.create = function create(options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5099 // simple test for ES5 support
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5100 if (typeof Object.create !== 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5101 throw new Error('ES5 not supported by this JavaScript engine. ' + 'Please load the es5-shim and es5-sham library for compatibility.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5102 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5103
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5104 // cached factories and instances
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5105 var factories = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5106 var instances = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5107
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5108 // create a namespace for the mathjs instance, and attach emitter functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5109 var math = emitter.mixin({});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5110 math.type = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5111 math.expression = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5112 transform: Object.create(math)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5113 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5115 // create a new typed instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5116 math.typed = typedFactory.create(math.type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5118 // create configuration options. These are private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5119 var _config = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5120 // minimum relative difference between two compared values,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5121 // used by all comparison functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5122 epsilon: 1e-12,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5124 // type of default matrix output. Choose 'matrix' (default) or 'array'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5125 matrix: 'Matrix',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5126
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5127 // type of default number output. Choose 'number' (default) 'BigNumber', or 'Fraction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5128 number: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5130 // number of significant digits in BigNumbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5131 precision: 64,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5132
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5133 // predictable output type of functions. When true, output type depends only
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5134 // on the input types. When false (default), output type can vary depending
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5135 // on input values. For example `math.sqrt(-2)` returns `NaN` when
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5136 // predictable is false, and returns `complex('2i')` when true.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5137 predictable: false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5138 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5139
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5140 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5141 * Load a function or data type from a factory.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5142 * If the function or data type already exists, the existing instance is
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5143 * returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5144 * @param {{type: string, name: string, factory: Function}} factory
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5145 * @returns {*}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5146 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5147 function load(factory) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5148 if (!isFactory(factory)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5149 throw new Error('Factory object with properties `type`, `name`, and `factory` expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5150 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5152 var index = factories.indexOf(factory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5153 var instance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5154 if (index === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5155 // doesn't yet exist
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5156 if (factory.math === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5157 // pass with math namespace
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5158 instance = factory.factory(math.type, _config, load, math.typed, math);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5159 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5160 instance = factory.factory(math.type, _config, load, math.typed);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5161 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5163 // append to the cache
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5164 factories.push(factory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5165 instances.push(instance);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5166 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5167 // already existing function, return the cached instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5168 instance = instances[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5169 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5170
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5171 return instance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5172 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5174 // load the import and config functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5175 math['import'] = load(importFactory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5176 math['config'] = load(configFactory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5178 // apply options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5179 if (options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5180 math.config(options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5181 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5182
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5183 return math;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5184 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5185
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5186 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5187 /* 69 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5188 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5190 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5192 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5193 * Clone an object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5194 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5195 * clone(x)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5196 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5197 * Can clone any primitive type, array, and object.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5198 * If x has a function clone, this function will be invoked to clone the object.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5199 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5200 * @param {*} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5201 * @return {*} clone
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5202 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5204 exports.clone = function clone(x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5205 var type = typeof x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5206
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5207 // immutable primitive types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5208 if (type === 'number' || type === 'string' || type === 'boolean' || x === null || x === undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5209 return x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5210 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5212 // use clone function of the object when available
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5213 if (typeof x.clone === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5214 return x.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5215 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5217 // array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5218 if (Array.isArray(x)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5219 return x.map(function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5220 return clone(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5221 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5222 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5224 if (x instanceof Number) return new Number(x.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5225 if (x instanceof String) return new String(x.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5226 if (x instanceof Boolean) return new Boolean(x.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5227 if (x instanceof Date) return new Date(x.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5228 if (x && x.isBigNumber === true) return x; // bignumbers are immutable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5229 if (x instanceof RegExp) throw new TypeError('Cannot clone ' + x); // TODO: clone a RegExp
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5231 // object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5232 var m = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5233 for (var key in x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5234 if (x.hasOwnProperty(key)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5235 m[key] = clone(x[key]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5236 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5237 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5238 return m;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5239 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5241 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5242 * Extend object a with the properties of object b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5243 * @param {Object} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5244 * @param {Object} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5245 * @return {Object} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5246 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5247 exports.extend = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5248 for (var prop in b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5249 if (b.hasOwnProperty(prop)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5250 a[prop] = b[prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5251 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5252 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5253 return a;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5254 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5255
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5256 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5257 * Deep extend an object a with the properties of object b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5258 * @param {Object} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5259 * @param {Object} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5260 * @returns {Object}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5261 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5262 exports.deepExtend = function deepExtend(a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5263 // TODO: add support for Arrays to deepExtend
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5264 if (Array.isArray(b)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5265 throw new TypeError('Arrays are not supported by deepExtend');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5266 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5267
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5268 for (var prop in b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5269 if (b.hasOwnProperty(prop)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5270 if (b[prop] && b[prop].constructor === Object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5271 if (a[prop] === undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5272 a[prop] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5273 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5274 if (a[prop].constructor === Object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5275 deepExtend(a[prop], b[prop]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5276 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5277 a[prop] = b[prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5278 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5279 } else if (Array.isArray(b[prop])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5280 throw new TypeError('Arrays are not supported by deepExtend');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5281 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5282 a[prop] = b[prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5283 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5284 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5285 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5286 return a;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5287 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5289 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5290 * Deep test equality of all fields in two pairs of arrays or objects.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5291 * @param {Array | Object} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5292 * @param {Array | Object} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5293 * @returns {boolean}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5294 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5295 exports.deepEqual = function deepEqual(a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5296 var prop, i, len;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5297 if (Array.isArray(a)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5298 if (!Array.isArray(b)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5299 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5300 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5302 if (a.length != b.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5303 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5304 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5305
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5306 for (i = 0, len = a.length; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5307 if (!exports.deepEqual(a[i], b[i])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5308 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5309 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5310 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5311 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5312 } else if (a instanceof Object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5313 if (Array.isArray(b) || !(b instanceof Object)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5314 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5315 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5317 for (prop in a) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5318 //noinspection JSUnfilteredForInLoop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5319 if (!exports.deepEqual(a[prop], b[prop])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5320 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5321 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5322 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5323 for (prop in b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5324 //noinspection JSUnfilteredForInLoop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5325 if (!exports.deepEqual(a[prop], b[prop])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5326 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5327 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5328 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5329 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5330 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5331 return typeof a === typeof b && a == b;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5332 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5333 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5335 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5336 * Test whether the current JavaScript engine supports Object.defineProperty
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5337 * @returns {boolean} returns true if supported
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5338 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5339 exports.canDefineProperty = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5340 // test needed for broken IE8 implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5341 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5342 if (Object.defineProperty) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5343 Object.defineProperty({}, 'x', { get: function () {} });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5344 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5345 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5346 } catch (e) {}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5347
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5348 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5349 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5351 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5352 * Attach a lazy loading property to a constant.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5353 * The given function `fn` is called once when the property is first requested.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5354 * On older browsers (<IE8), the function will fall back to direct evaluation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5355 * of the properties value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5356 * @param {Object} object Object where to add the property
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5357 * @param {string} prop Property name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5358 * @param {Function} fn Function returning the property value. Called
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5359 * without arguments.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5360 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5361 exports.lazy = function (object, prop, fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5362 if (exports.canDefineProperty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5363 var _uninitialized = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5364 var _value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5365 Object.defineProperty(object, prop, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5366 get: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5367 if (_uninitialized) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5368 _value = fn();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5369 _uninitialized = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5370 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5371 return _value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5372 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5374 set: function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5375 _value = value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5376 _uninitialized = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5377 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5379 configurable: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5380 enumerable: true
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5381 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5382 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5383 // fall back to immediate evaluation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5384 object[prop] = fn();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5385 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5386 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5388 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5389 * Traverse a path into an object.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5390 * When a namespace is missing, it will be created
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5391 * @param {Object} object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5392 * @param {string} path A dot separated string like 'name.space'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5393 * @return {Object} Returns the object at the end of the path
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5394 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5395 exports.traverse = function (object, path) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5396 var obj = object;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5397
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5398 if (path) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5399 var names = path.split('.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5400 for (var i = 0; i < names.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5401 var name = names[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5402 if (!(name in obj)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5403 obj[name] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5404 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5405 obj = obj[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5406 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5407 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5408
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5409 return obj;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5410 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5412 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5413 * Test whether an object is a factory. a factory has fields:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5414 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5415 * - factory: function (type: Object, config: Object, load: function, typed: function [, math: Object]) (required)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5416 * - name: string (optional)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5417 * - path: string A dot separated path (optional)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5418 * - math: boolean If true (false by default), the math namespace is passed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5419 * as fifth argument of the factory function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5420 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5421 * @param {*} object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5422 * @returns {boolean}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5423 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5424 exports.isFactory = function (object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5425 return object && typeof object.factory === 'function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5426 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5427
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5428 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5429 /* 70 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5430 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5432 var typedFunction = __webpack_require__(71);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5433 var digits = __webpack_require__(72).digits;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5435 // returns a new instance of typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5436 var createTyped = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5437 // initially, return the original instance of typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5438 // consecutively, return a new instance from typed.create.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5439 createTyped = typedFunction.create;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5440 return typedFunction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5441 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5443 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5444 * Factory function for creating a new typed instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5445 * @param {Object} type Object with data types like Complex and BigNumber
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5446 * @returns {Function}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5447 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5448 exports.create = function create(type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5449 // TODO: typed-function must be able to silently ignore signatures with unknown data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5451 // get a new instance of typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5452 var typed = createTyped();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5454 // define all types. The order of the types determines in which order function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5455 // arguments are type-checked (so for performance it's important to put the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5456 // most used types first).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5457 typed.types = [{ name: 'number', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5458 return typeof x === 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5459 } }, { name: 'Complex', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5460 return x && x.isComplex;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5461 } }, { name: 'BigNumber', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5462 return x && x.isBigNumber;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5463 } }, { name: 'Fraction', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5464 return x && x.isFraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5465 } }, { name: 'Unit', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5466 return x && x.isUnit;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5467 } }, { name: 'string', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5468 return typeof x === 'string';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5469 } }, { name: 'Array', test: Array.isArray }, { name: 'Matrix', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5470 return x && x.isMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5471 } }, { name: 'DenseMatrix', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5472 return x && x.isDenseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5473 } }, { name: 'SparseMatrix', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5474 return x && x.isSparseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5475 } }, { name: 'ImmutableDenseMatrix', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5476 return x && x.isImmutableDenseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5477 } }, { name: 'Range', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5478 return x && x.isRange;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5479 } }, { name: 'Index', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5480 return x && x.isIndex;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5481 } }, { name: 'boolean', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5482 return typeof x === 'boolean';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5483 } }, { name: 'ResultSet', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5484 return x && x.isResultSet;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5485 } }, { name: 'Help', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5486 return x && x.isHelp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5487 } }, { name: 'function', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5488 return typeof x === 'function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5489 } }, { name: 'Date', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5490 return x instanceof Date;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5491 } }, { name: 'RegExp', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5492 return x instanceof RegExp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5493 } }, { name: 'Object', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5494 return typeof x === 'object';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5495 } }, { name: 'null', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5496 return x === null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5497 } }, { name: 'undefined', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5498 return x === undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5499 } }];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5501 // TODO: add conversion from BigNumber to number?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5502 typed.conversions = [{
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5503 from: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5504 to: 'BigNumber',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5505 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5506 // note: conversion from number to BigNumber can fail if x has >15 digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5507 if (digits(x) > 15) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5508 throw new TypeError('Cannot implicitly convert a number with >15 significant digits to BigNumber ' + '(value: ' + x + '). ' + 'Use function bignumber(x) to convert to BigNumber.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5509 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5510 return new type.BigNumber(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5511 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5512 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5513 from: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5514 to: 'Complex',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5515 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5516 return new type.Complex(x, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5517 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5518 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5519 from: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5520 to: 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5521 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5522 return x + '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5523 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5524 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5525 from: 'BigNumber',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5526 to: 'Complex',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5527 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5528 return new type.Complex(x.toNumber(), 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5529 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5530 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5531 from: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5532 to: 'Complex',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5533 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5534 return new type.Complex(x.valueOf(), 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5535 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5536 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5537 from: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5538 to: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5539 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5540 if (digits(x) > 15) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5541 throw new TypeError('Cannot implicitly convert a number with >15 significant digits to Fraction ' + '(value: ' + x + '). ' + 'Use function fraction(x) to convert to Fraction.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5542 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5543 return new type.Fraction(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5544 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5545 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5546 // FIXME: add conversion from Fraction to number, for example for `sqrt(fraction(1,3))`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5547 // from: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5548 // to: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5549 // convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5550 // return x.valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5551 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5552 //}, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5553 from: 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5554 to: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5555 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5556 var n = Number(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5557 if (isNaN(n)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5558 throw new Error('Cannot convert "' + x + '" to a number');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5559 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5560 return n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5561 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5562 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5563 from: 'boolean',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5564 to: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5565 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5566 return +x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5567 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5568 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5569 from: 'boolean',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5570 to: 'BigNumber',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5571 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5572 return new type.BigNumber(+x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5573 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5574 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5575 from: 'boolean',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5576 to: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5577 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5578 return new type.Fraction(+x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5579 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5580 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5581 from: 'boolean',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5582 to: 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5583 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5584 return +x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5585 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5586 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5587 from: 'null',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5588 to: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5589 convert: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5590 return 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5591 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5592 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5593 from: 'null',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5594 to: 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5595 convert: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5596 return 'null';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5597 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5598 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5599 from: 'null',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5600 to: 'BigNumber',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5601 convert: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5602 return new type.BigNumber(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5603 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5604 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5605 from: 'null',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5606 to: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5607 convert: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5608 return new type.Fraction(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5609 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5610 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5611 from: 'Array',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5612 to: 'Matrix',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5613 convert: function (array) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5614 // TODO: how to decide on the right type of matrix to create?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5615 return new type.DenseMatrix(array);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5616 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5617 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5618 from: 'Matrix',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5619 to: 'Array',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5620 convert: function (matrix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5621 return matrix.valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5622 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5623 }];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5625 return typed;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5626 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5628 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5629 /* 71 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5630 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5631
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5632 var __WEBPACK_AMD_DEFINE_FACTORY__, __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;/**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5633 * typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5634 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5635 * Type checking for JavaScript functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5636 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5637 * https://github.com/josdejong/typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5638 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5639 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5641 (function (root, factory) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5642 if (true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5643 // AMD. Register as an anonymous module.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5644 !(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_FACTORY__ = (factory), __WEBPACK_AMD_DEFINE_RESULT__ = (typeof __WEBPACK_AMD_DEFINE_FACTORY__ === 'function' ? (__WEBPACK_AMD_DEFINE_FACTORY__.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__)) : __WEBPACK_AMD_DEFINE_FACTORY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5645 } else if (typeof exports === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5646 // OldNode. Does not work with strict CommonJS, but
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5647 // only CommonJS-like environments that support module.exports,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5648 // like OldNode.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5649 module.exports = factory();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5650 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5651 // Browser globals (root is window)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5652 root.typed = factory();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5653 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5654 })(this, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5655 // factory function to create a new instance of typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5656 // TODO: allow passing configuration, types, tests via the factory function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5657 function create() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5658 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5659 * Get a type test function for a specific data type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5660 * @param {string} name Name of a data type like 'number' or 'string'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5661 * @returns {Function(obj: *) : boolean} Returns a type testing function.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5662 * Throws an error for an unknown type.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5663 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5664 function getTypeTest(name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5665 var test;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5666 for (var i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5667 var entry = typed.types[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5668 if (entry.name === name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5669 test = entry.test;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5670 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5671 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5672 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5674 if (!test) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5675 var hint;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5676 for (i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5677 entry = typed.types[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5678 if (entry.name.toLowerCase() == name.toLowerCase()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5679 hint = entry.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5680 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5681 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5682 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5683
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5684 throw new Error('Unknown type "' + name + '"' + (hint ? '. Did you mean "' + hint + '"?' : ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5685 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5686 return test;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5687 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5689 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5690 * Retrieve the function name from a set of functions, and check
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5691 * whether the name of all functions match (if given)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5692 * @param {Array.<function>} fns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5693 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5694 function getName(fns) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5695 var name = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5697 for (var i = 0; i < fns.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5698 var fn = fns[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5700 // merge function name when this is a typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5701 if (fn.signatures && fn.name != '') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5702 if (name == '') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5703 name = fn.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5704 } else if (name != fn.name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5705 var err = new Error('Function names do not match (expected: ' + name + ', actual: ' + fn.name + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5706 err.data = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5707 actual: fn.name,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5708 expected: name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5709 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5710 throw err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5711 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5713 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5714
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5715 return name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5716 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5718 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5719 * Create an ArgumentsError. Creates messages like:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5720 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5721 * Unexpected type of argument (expected: ..., actual: ..., index: ...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5722 * Too few arguments (expected: ..., index: ...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5723 * Too many arguments (expected: ..., actual: ...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5724 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5725 * @param {String} fn Function name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5726 * @param {number} argCount Number of arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5727 * @param {Number} index Current argument index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5728 * @param {*} actual Current argument
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5729 * @param {string} [expected] An optional, comma separated string with
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5730 * expected types on given index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5731 * @extends Error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5732 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5733 function createError(fn, argCount, index, actual, expected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5734 var actualType = getTypeOf(actual);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5735 var _expected = expected ? expected.split(',') : null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5736 var _fn = fn || 'unnamed';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5737 var anyType = _expected && contains(_expected, 'any');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5738 var message;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5739 var data = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5740 fn: fn,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5741 index: index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5742 actual: actual,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5743 expected: _expected
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5744 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5745
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5746 if (_expected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5747 if (argCount > index && !anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5748 // unexpected type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5749 message = 'Unexpected type of argument in function ' + _fn + ' (expected: ' + _expected.join(' or ') + ', actual: ' + actualType + ', index: ' + index + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5750 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5751 // too few arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5752 message = 'Too few arguments in function ' + _fn + ' (expected: ' + _expected.join(' or ') + ', index: ' + index + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5753 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5754 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5755 // too many arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5756 message = 'Too many arguments in function ' + _fn + ' (expected: ' + index + ', actual: ' + argCount + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5757 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5759 var err = new TypeError(message);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5760 err.data = data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5761 return err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5762 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5764 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5765 * Collection with function references (local shortcuts to functions)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5766 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5767 * @param {string} [name='refs'] Optional name for the refs, used to generate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5768 * JavaScript code
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5769 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5770 function Refs(name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5771 this.name = name || 'refs';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5772 this.categories = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5773 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5775 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5776 * Add a function reference.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5777 * @param {Function} fn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5778 * @param {string} [category='fn'] A function category, like 'fn' or 'signature'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5779 * @returns {string} Returns the function name, for example 'fn0' or 'signature2'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5780 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5781 Refs.prototype.add = function (fn, category) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5782 var cat = category || 'fn';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5783 if (!this.categories[cat]) this.categories[cat] = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5785 var index = this.categories[cat].indexOf(fn);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5786 if (index == -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5787 index = this.categories[cat].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5788 this.categories[cat].push(fn);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5789 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5790
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5791 return cat + index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5792 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5794 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5795 * Create code lines for all function references
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5796 * @returns {string} Returns the code containing all function references
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5797 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5798 Refs.prototype.toCode = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5799 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5800 var path = this.name + '.categories';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5801 var categories = this.categories;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5802
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5803 for (var cat in categories) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5804 if (categories.hasOwnProperty(cat)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5805 var category = categories[cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5806
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5807 for (var i = 0; i < category.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5808 code.push('var ' + cat + i + ' = ' + path + '[\'' + cat + '\'][' + i + '];');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5809 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5810 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5811 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5813 return code.join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5814 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5816 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5817 * A function parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5818 * @param {string | string[] | Param} types A parameter type like 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5819 * 'number | boolean'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5820 * @param {boolean} [varArgs=false] Variable arguments if true
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5821 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5822 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5823 function Param(types, varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5824 // parse the types, can be a string with types separated by pipe characters |
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5825 if (typeof types === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5826 // parse variable arguments operator (ellipses '...number')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5827 var _types = types.trim();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5828 var _varArgs = _types.substr(0, 3) === '...';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5829 if (_varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5830 _types = _types.substr(3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5831 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5832 if (_types === '') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5833 this.types = ['any'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5834 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5835 this.types = _types.split('|');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5836 for (var i = 0; i < this.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5837 this.types[i] = this.types[i].trim();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5838 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5839 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5840 } else if (Array.isArray(types)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5841 this.types = types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5842 } else if (types instanceof Param) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5843 return types.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5844 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5845 throw new Error('String or Array expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5846 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5848 // can hold a type to which to convert when handling this parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5849 this.conversions = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5850 // TODO: implement better API for conversions, be able to add conversions via constructor (support a new type Object?)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5851
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5852 // variable arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5853 this.varArgs = _varArgs || varArgs || false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5855 // check for any type arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5856 this.anyType = this.types.indexOf('any') !== -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5857 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5859 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5860 * Order Params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5861 * any type ('any') will be ordered last, and object as second last (as other
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5862 * types may be an object as well, like Array).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5863 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5864 * @param {Param} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5865 * @param {Param} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5866 * @returns {number} Returns 1 if a > b, -1 if a < b, and else 0.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5867 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5868 Param.compare = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5869 // TODO: simplify parameter comparison, it's a mess
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5870 if (a.anyType) return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5871 if (b.anyType) return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5873 if (contains(a.types, 'Object')) return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5874 if (contains(b.types, 'Object')) return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5876 if (a.hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5877 if (b.hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5878 var i, ac, bc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5880 for (i = 0; i < a.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5881 if (a.conversions[i] !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5882 ac = a.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5883 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5884 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5885 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5886
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5887 for (i = 0; i < b.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5888 if (b.conversions[i] !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5889 bc = b.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5890 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5891 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5892 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5894 return typed.conversions.indexOf(ac) - typed.conversions.indexOf(bc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5895 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5896 return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5897 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5898 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5899 if (b.hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5900 return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5901 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5902 // both params have no conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5903 var ai, bi;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5904
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5905 for (i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5906 if (typed.types[i].name === a.types[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5907 ai = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5908 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5909 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5910 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5912 for (i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5913 if (typed.types[i].name === b.types[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5914 bi = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5915 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5916 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5917 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5919 return ai - bi;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5920 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5921 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5922 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5924 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5925 * Test whether this parameters types overlap an other parameters types.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5926 * @param {Param} other
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5927 * @return {boolean} Returns true when there are conflicting types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5928 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5929 Param.prototype.overlapping = function (other) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5930 for (var i = 0; i < this.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5931 if (contains(other.types, this.types[i])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5932 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5933 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5934 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5935 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5936 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5938 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5939 * Create a clone of this param
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5940 * @returns {Param} Returns a cloned version of this param
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5941 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5942 Param.prototype.clone = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5943 var param = new Param(this.types.slice(), this.varArgs);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5944 param.conversions = this.conversions.slice();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5945 return param;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5946 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5948 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5949 * Test whether this parameter contains conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5950 * @returns {boolean} Returns true if the parameter contains one or
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5951 * multiple conversions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5952 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5953 Param.prototype.hasConversions = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5954 return this.conversions.length > 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5955 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5956
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5957 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5958 * Tests whether this parameters contains any of the provided types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5959 * @param {Object} types A Map with types, like {'number': true}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5960 * @returns {boolean} Returns true when the parameter contains any
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5961 * of the provided types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5962 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5963 Param.prototype.contains = function (types) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5964 for (var i = 0; i < this.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5965 if (types[this.types[i]]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5966 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5967 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5968 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5969 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5970 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5972 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5973 * Return a string representation of this params types, like 'string' or
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5974 * 'number | boolean' or '...number'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5975 * @param {boolean} [toConversion] If true, the returned types string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5976 * contains the types where the parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5977 * will convert to. If false (default)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5978 * the "from" types are returned
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5979 * @returns {string}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5980 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5981 Param.prototype.toString = function (toConversion) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5982 var types = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5983 var keys = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5984
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5985 for (var i = 0; i < this.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5986 var conversion = this.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5987 var type = toConversion && conversion ? conversion.to : this.types[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5988 if (!(type in keys)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5989 keys[type] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5990 types.push(type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5991 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5992 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5994 return (this.varArgs ? '...' : '') + types.join('|');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5995 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5997 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5998 * A function signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
5999 * @param {string | string[] | Param[]} params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6000 * Array with the type(s) of each parameter,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6001 * or a comma separated string with types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6002 * @param {Function} fn The actual function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6003 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6004 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6005 function Signature(params, fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6006 var _params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6007 if (typeof params === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6008 _params = params !== '' ? params.split(',') : [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6009 } else if (Array.isArray(params)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6010 _params = params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6011 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6012 throw new Error('string or Array expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6013 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6014
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6015 this.params = new Array(_params.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6016 for (var i = 0; i < _params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6017 var param = new Param(_params[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6018 this.params[i] = param;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6019 if (i === _params.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6020 // the last argument
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6021 this.varArgs = param.varArgs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6022 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6023 // non-last argument
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6024 if (param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6025 throw new SyntaxError('Unexpected variable arguments operator "..."');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6026 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6027 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6028 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6029
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6030 this.fn = fn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6031 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6033 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6034 * Create a clone of this signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6035 * @returns {Signature} Returns a cloned version of this signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6036 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6037 Signature.prototype.clone = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6038 return new Signature(this.params.slice(), this.fn);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6039 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6040
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6041 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6042 * Expand a signature: split params with union types in separate signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6043 * For example split a Signature "string | number" into two signatures.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6044 * @return {Signature[]} Returns an array with signatures (at least one)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6045 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6046 Signature.prototype.expand = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6047 var signatures = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6049 function recurse(signature, path) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6050 if (path.length < signature.params.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6051 var i, newParam, conversion;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6053 var param = signature.params[path.length];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6054 if (param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6055 // a variable argument. do not split the types in the parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6056 newParam = param.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6058 // add conversions to the parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6059 // recurse for all conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6060 for (i = 0; i < typed.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6061 conversion = typed.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6062 if (!contains(param.types, conversion.from) && contains(param.types, conversion.to)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6063 var j = newParam.types.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6064 newParam.types[j] = conversion.from;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6065 newParam.conversions[j] = conversion;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6066 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6067 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6069 recurse(signature, path.concat(newParam));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6070 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6071 // split each type in the parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6072 for (i = 0; i < param.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6073 recurse(signature, path.concat(new Param(param.types[i])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6074 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6075
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6076 // recurse for all conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6077 for (i = 0; i < typed.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6078 conversion = typed.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6079 if (!contains(param.types, conversion.from) && contains(param.types, conversion.to)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6080 newParam = new Param(conversion.from);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6081 newParam.conversions[0] = conversion;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6082 recurse(signature, path.concat(newParam));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6083 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6084 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6085 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6086 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6087 signatures.push(new Signature(path, signature.fn));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6088 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6089 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6090
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6091 recurse(this, []);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6092
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6093 return signatures;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6094 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6095
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6096 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6097 * Compare two signatures.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6098 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6099 * When two params are equal and contain conversions, they will be sorted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6100 * by lowest index of the first conversions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6101 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6102 * @param {Signature} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6103 * @param {Signature} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6104 * @returns {number} Returns 1 if a > b, -1 if a < b, and else 0.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6105 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6106 Signature.compare = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6107 if (a.params.length > b.params.length) return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6108 if (a.params.length < b.params.length) return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6110 // count the number of conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6111 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6112 var len = a.params.length; // a and b have equal amount of params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6113 var ac = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6114 var bc = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6115 for (i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6116 if (a.params[i].hasConversions()) ac++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6117 if (b.params[i].hasConversions()) bc++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6118 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6119
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6120 if (ac > bc) return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6121 if (ac < bc) return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6122
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6123 // compare the order per parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6124 for (i = 0; i < a.params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6125 var cmp = Param.compare(a.params[i], b.params[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6126 if (cmp !== 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6127 return cmp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6128 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6129 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6131 return 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6132 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6134 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6135 * Test whether any of the signatures parameters has conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6136 * @return {boolean} Returns true when any of the parameters contains
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6137 * conversions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6138 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6139 Signature.prototype.hasConversions = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6140 for (var i = 0; i < this.params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6141 if (this.params[i].hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6142 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6143 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6144 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6145 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6146 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6148 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6149 * Test whether this signature should be ignored.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6150 * Checks whether any of the parameters contains a type listed in
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6151 * typed.ignore
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6152 * @return {boolean} Returns true when the signature should be ignored
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6153 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6154 Signature.prototype.ignore = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6155 // create a map with ignored types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6156 var types = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6157 for (var i = 0; i < typed.ignore.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6158 types[typed.ignore[i]] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6159 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6161 // test whether any of the parameters contains this type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6162 for (i = 0; i < this.params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6163 if (this.params[i].contains(types)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6164 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6165 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6166 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6167
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6168 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6169 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6170
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6171 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6172 * Generate the code to invoke this signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6173 * @param {Refs} refs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6174 * @param {string} prefix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6175 * @returns {string} Returns code
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6176 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6177 Signature.prototype.toCode = function (refs, prefix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6178 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6180 var args = new Array(this.params.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6181 for (var i = 0; i < this.params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6182 var param = this.params[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6183 var conversion = param.conversions[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6184 if (param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6185 args[i] = 'varArgs';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6186 } else if (conversion) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6187 args[i] = refs.add(conversion.convert, 'convert') + '(arg' + i + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6188 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6189 args[i] = 'arg' + i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6190 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6191 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6192
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6193 var ref = this.fn ? refs.add(this.fn, 'signature') : undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6194 if (ref) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6195 return prefix + 'return ' + ref + '(' + args.join(', ') + '); // signature: ' + this.params.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6196 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6198 return code.join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6199 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6201 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6202 * Return a string representation of the signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6203 * @returns {string}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6204 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6205 Signature.prototype.toString = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6206 return this.params.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6207 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6208
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6209 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6210 * A group of signatures with the same parameter on given index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6211 * @param {Param[]} path
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6212 * @param {Signature} [signature]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6213 * @param {Node[]} childs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6214 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6215 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6216 function Node(path, signature, childs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6217 this.path = path || [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6218 this.param = path[path.length - 1] || null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6219 this.signature = signature || null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6220 this.childs = childs || [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6223 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6224 * Generate code for this group of signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6225 * @param {Refs} refs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6226 * @param {string} prefix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6227 * @param {Node | undefined} [anyType] Sibling of this node with any type parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6228 * @returns {string} Returns the code as string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6229 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6230 Node.prototype.toCode = function (refs, prefix, anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6231 // TODO: split this function in multiple functions, it's too large
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6232 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6234 if (this.param) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6235 var index = this.path.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6236 var conversion = this.param.conversions[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6237 var comment = '// type: ' + (conversion ? conversion.from + ' (convert to ' + conversion.to + ')' : this.param);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6239 // non-root node (path is non-empty)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6240 if (this.param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6241 if (this.param.anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6242 // variable arguments with any type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6243 code.push(prefix + 'if (arguments.length > ' + index + ') {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6244 code.push(prefix + ' var varArgs = [];');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6245 code.push(prefix + ' for (var i = ' + index + '; i < arguments.length; i++) {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6246 code.push(prefix + ' varArgs.push(arguments[i]);');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6247 code.push(prefix + ' }');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6248 code.push(this.signature.toCode(refs, prefix + ' '));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6249 code.push(prefix + '}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6250 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6251 // variable arguments with a fixed type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6252 var getTests = function (types, arg) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6253 var tests = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6254 for (var i = 0; i < types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6255 tests[i] = refs.add(getTypeTest(types[i]), 'test') + '(' + arg + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6256 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6257 return tests.join(' || ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6258 }.bind(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6259
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6260 var allTypes = this.param.types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6261 var exactTypes = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6262 for (var i = 0; i < allTypes.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6263 if (this.param.conversions[i] === undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6264 exactTypes.push(allTypes[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6265 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6266 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6267
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6268 code.push(prefix + 'if (' + getTests(allTypes, 'arg' + index) + ') { ' + comment);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6269 code.push(prefix + ' var varArgs = [arg' + index + '];');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6270 code.push(prefix + ' for (var i = ' + (index + 1) + '; i < arguments.length; i++) {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6271 code.push(prefix + ' if (' + getTests(exactTypes, 'arguments[i]') + ') {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6272 code.push(prefix + ' varArgs.push(arguments[i]);');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6273
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6274 for (var i = 0; i < allTypes.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6275 var conversion_i = this.param.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6276 if (conversion_i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6277 var test = refs.add(getTypeTest(allTypes[i]), 'test');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6278 var convert = refs.add(conversion_i.convert, 'convert');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6279 code.push(prefix + ' }');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6280 code.push(prefix + ' else if (' + test + '(arguments[i])) {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6281 code.push(prefix + ' varArgs.push(' + convert + '(arguments[i]));');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6282 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6283 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6284 code.push(prefix + ' } else {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6285 code.push(prefix + ' throw createError(name, arguments.length, i, arguments[i], \'' + exactTypes.join(',') + '\');');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6286 code.push(prefix + ' }');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6287 code.push(prefix + ' }');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6288 code.push(this.signature.toCode(refs, prefix + ' '));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6289 code.push(prefix + '}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6290 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6291 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6292 if (this.param.anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6293 // any type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6294 code.push(prefix + '// type: any');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6295 code.push(this._innerCode(refs, prefix, anyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6296 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6297 // regular type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6298 var type = this.param.types[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6299 var test = type !== 'any' ? refs.add(getTypeTest(type), 'test') : null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6300
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6301 code.push(prefix + 'if (' + test + '(arg' + index + ')) { ' + comment);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6302 code.push(this._innerCode(refs, prefix + ' ', anyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6303 code.push(prefix + '}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6304 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6305 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6306 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6307 // root node (path is empty)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6308 code.push(this._innerCode(refs, prefix, anyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6309 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6310
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6311 return code.join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6312 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6314 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6315 * Generate inner code for this group of signatures.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6316 * This is a helper function of Node.prototype.toCode
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6317 * @param {Refs} refs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6318 * @param {string} prefix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6319 * @param {Node | undefined} [anyType] Sibling of this node with any type parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6320 * @returns {string} Returns the inner code as string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6321 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6322 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6323 Node.prototype._innerCode = function (refs, prefix, anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6324 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6325 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6326
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6327 if (this.signature) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6328 code.push(prefix + 'if (arguments.length === ' + this.path.length + ') {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6329 code.push(this.signature.toCode(refs, prefix + ' '));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6330 code.push(prefix + '}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6331 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6333 var nextAnyType;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6334 for (i = 0; i < this.childs.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6335 if (this.childs[i].param.anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6336 nextAnyType = this.childs[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6337 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6338 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6339 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6341 for (i = 0; i < this.childs.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6342 code.push(this.childs[i].toCode(refs, prefix, nextAnyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6343 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6344
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6345 if (anyType && !this.param.anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6346 code.push(anyType.toCode(refs, prefix, nextAnyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6348
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6349 var exceptions = this._exceptions(refs, prefix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6350 if (exceptions) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6351 code.push(exceptions);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6352 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6354 return code.join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6355 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6357 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6358 * Generate code to throw exceptions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6359 * @param {Refs} refs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6360 * @param {string} prefix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6361 * @returns {string} Returns the inner code as string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6362 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6363 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6364 Node.prototype._exceptions = function (refs, prefix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6365 var index = this.path.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6366
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6367 if (this.childs.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6368 // TODO: can this condition be simplified? (we have a fall-through here)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6369 return [prefix + 'if (arguments.length > ' + index + ') {', prefix + ' throw createError(name, arguments.length, ' + index + ', arguments[' + index + ']);', prefix + '}'].join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6370 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6371 var keys = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6372 var types = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6374 for (var i = 0; i < this.childs.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6375 var node = this.childs[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6376 if (node.param) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6377 for (var j = 0; j < node.param.types.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6378 var type = node.param.types[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6379 if (!(type in keys) && !node.param.conversions[j]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6380 keys[type] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6381 types.push(type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6382 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6383 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6384 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6385 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6386
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6387 return prefix + 'throw createError(name, arguments.length, ' + index + ', arguments[' + index + '], \'' + types.join(',') + '\');';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6388 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6389 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6390
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6391 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6392 * Split all raw signatures into an array with expanded Signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6393 * @param {Object.<string, Function>} rawSignatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6394 * @return {Signature[]} Returns an array with expanded signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6395 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6396 function parseSignatures(rawSignatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6397 // FIXME: need to have deterministic ordering of signatures, do not create via object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6398 var signature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6399 var keys = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6400 var signatures = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6401 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6402
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6403 for (var types in rawSignatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6404 if (rawSignatures.hasOwnProperty(types)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6405 var fn = rawSignatures[types];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6406 signature = new Signature(types, fn);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6407
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6408 if (signature.ignore()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6409 continue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6410 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6412 var expanded = signature.expand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6413
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6414 for (i = 0; i < expanded.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6415 var signature_i = expanded[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6416 var key = signature_i.toString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6417 var existing = keys[key];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6418 if (!existing) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6419 keys[key] = signature_i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6420 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6421 var cmp = Signature.compare(signature_i, existing);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6422 if (cmp < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6423 // override if sorted first
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6424 keys[key] = signature_i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6425 } else if (cmp === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6426 throw new Error('Signature "' + key + '" is defined twice');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6427 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6428 // else: just ignore
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6429 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6430 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6431 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6432 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6434 // convert from map to array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6435 for (key in keys) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6436 if (keys.hasOwnProperty(key)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6437 signatures.push(keys[key]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6438 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6439 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6440
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6441 // order the signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6442 signatures.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6443 return Signature.compare(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6444 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6446 // filter redundant conversions from signatures with varArgs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6447 // TODO: simplify this loop or move it to a separate function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6448 for (i = 0; i < signatures.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6449 signature = signatures[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6451 if (signature.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6452 var index = signature.params.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6453 var param = signature.params[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6455 var t = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6456 while (t < param.types.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6457 if (param.conversions[t]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6458 var type = param.types[t];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6460 for (var j = 0; j < signatures.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6461 var other = signatures[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6462 var p = other.params[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6463
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6464 if (other !== signature && p && contains(p.types, type) && !p.conversions[index]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6465 // this (conversion) type already exists, remove it
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6466 param.types.splice(t, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6467 param.conversions.splice(t, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6468 t--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6469 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6470 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6471 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6472 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6473 t++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6474 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6475 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6476 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6477
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6478 return signatures;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6479 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6481 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6482 * create a map with normalized signatures as key and the function as value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6483 * @param {Signature[]} signatures An array with split signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6484 * @return {Object.<string, Function>} Returns a map with normalized
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6485 * signatures as key, and the function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6486 * as value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6487 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6488 function mapSignatures(signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6489 var normalized = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6490
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6491 for (var i = 0; i < signatures.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6492 var signature = signatures[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6493 if (signature.fn && !signature.hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6494 var params = signature.params.join(',');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6495 normalized[params] = signature.fn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6496 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6497 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6499 return normalized;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6500 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6501
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6502 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6503 * Parse signatures recursively in a node tree.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6504 * @param {Signature[]} signatures Array with expanded signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6505 * @param {Param[]} path Traversed path of parameter types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6506 * @return {Node} Returns a node tree
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6507 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6508 function parseTree(signatures, path) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6509 var i, signature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6510 var index = path.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6511 var nodeSignature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6513 var filtered = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6514 for (i = 0; i < signatures.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6515 signature = signatures[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6517 // filter the first signature with the correct number of params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6518 if (signature.params.length === index && !nodeSignature) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6519 nodeSignature = signature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6520 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6521
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6522 if (signature.params[index] != undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6523 filtered.push(signature);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6524 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6525 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6527 // sort the filtered signatures by param
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6528 filtered.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6529 return Param.compare(a.params[index], b.params[index]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6530 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6532 // recurse over the signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6533 var entries = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6534 for (i = 0; i < filtered.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6535 signature = filtered[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6536 // group signatures with the same param at current index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6537 var param = signature.params[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6538
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6539 // TODO: replace the next filter loop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6540 var existing = entries.filter(function (entry) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6541 return entry.param.overlapping(param);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6542 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6544 //var existing;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6545 //for (var j = 0; j < entries.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6546 // if (entries[j].param.overlapping(param)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6547 // existing = entries[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6548 // break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6549 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6550 //}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6552 if (existing) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6553 if (existing.param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6554 throw new Error('Conflicting types "' + existing.param + '" and "' + param + '"');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6555 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6556 existing.signatures.push(signature);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6557 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6558 entries.push({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6559 param: param,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6560 signatures: [signature]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6561 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6562 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6563 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6564
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6565 // parse the childs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6566 var childs = new Array(entries.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6567 for (i = 0; i < entries.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6568 var entry = entries[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6569 childs[i] = parseTree(entry.signatures, path.concat(entry.param));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6570 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6572 return new Node(path, nodeSignature, childs);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6573 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6575 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6576 * Generate an array like ['arg0', 'arg1', 'arg2']
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6577 * @param {number} count Number of arguments to generate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6578 * @returns {Array} Returns an array with argument names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6579 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6580 function getArgs(count) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6581 // create an array with all argument names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6582 var args = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6583 for (var i = 0; i < count; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6584 args[i] = 'arg' + i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6585 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6587 return args;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6589
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6590 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6591 * Compose a function from sub-functions each handling a single type signature.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6592 * Signatures:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6593 * typed(signature: string, fn: function)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6594 * typed(name: string, signature: string, fn: function)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6595 * typed(signatures: Object.<string, function>)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6596 * typed(name: string, signatures: Object.<string, function>)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6597 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6598 * @param {string | null} name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6599 * @param {Object.<string, Function>} signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6600 * @return {Function} Returns the typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6601 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6602 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6603 function _typed(name, signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6604 var refs = new Refs();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6606 // parse signatures, expand them
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6607 var _signatures = parseSignatures(signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6608 if (_signatures.length == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6609 throw new Error('No signatures provided');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6610 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6611
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6612 // parse signatures into a node tree
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6613 var node = parseTree(_signatures, []);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6615 //var util = require('util');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6616 //console.log('ROOT');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6617 //console.log(util.inspect(node, { depth: null }));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6618
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6619 // generate code for the typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6620 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6621 var _name = name || '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6622 var _args = getArgs(maxParams(_signatures));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6623 code.push('function ' + _name + '(' + _args.join(', ') + ') {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6624 code.push(' "use strict";');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6625 code.push(' var name = \'' + _name + '\';');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6626 code.push(node.toCode(refs, ' '));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6627 code.push('}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6628
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6629 // generate body for the factory function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6630 var body = [refs.toCode(), 'return ' + code.join('\n')].join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6631
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6632 // evaluate the JavaScript code and attach function references
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6633 var factory = new Function(refs.name, 'createError', body);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6634 var fn = factory(refs, createError);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6636 //console.log('FN\n' + fn.toString()); // TODO: cleanup
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6637
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6638 // attach the signatures with sub-functions to the constructed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6639 fn.signatures = mapSignatures(_signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6641 return fn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6642 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6644 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6645 * Calculate the maximum number of parameters in givens signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6646 * @param {Signature[]} signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6647 * @returns {number} The maximum number of parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6648 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6649 function maxParams(signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6650 var max = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6652 for (var i = 0; i < signatures.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6653 var len = signatures[i].params.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6654 if (len > max) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6655 max = len;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6656 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6657 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6658
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6659 return max;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6660 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6662 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6663 * Get the type of a value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6664 * @param {*} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6665 * @returns {string} Returns a string with the type of value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6666 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6667 function getTypeOf(x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6668 var obj;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6669
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6670 for (var i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6671 var entry = typed.types[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6672
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6673 if (entry.name === 'Object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6674 // Array and Date are also Object, so test for Object afterwards
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6675 obj = entry;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6676 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6677 if (entry.test(x)) return entry.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6678 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6679 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6681 // at last, test whether an object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6682 if (obj && obj.test(x)) return obj.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6683
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6684 return 'unknown';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6685 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6686
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6687 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6688 * Test whether an array contains some entry
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6689 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6690 * @param {*} entry
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6691 * @return {boolean} Returns true if array contains entry, false if not.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6692 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6693 function contains(array, entry) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6694 return array.indexOf(entry) !== -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6695 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6697 // data type tests
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6698 var types = [{ name: 'number', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6699 return typeof x === 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6700 } }, { name: 'string', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6701 return typeof x === 'string';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6702 } }, { name: 'boolean', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6703 return typeof x === 'boolean';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6704 } }, { name: 'Function', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6705 return typeof x === 'function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6706 } }, { name: 'Array', test: Array.isArray }, { name: 'Date', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6707 return x instanceof Date;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6708 } }, { name: 'RegExp', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6709 return x instanceof RegExp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6710 } }, { name: 'Object', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6711 return typeof x === 'object';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6712 } }, { name: 'null', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6713 return x === null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6714 } }, { name: 'undefined', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6715 return x === undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6716 } }];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6718 // configuration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6719 var config = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6720
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6721 // type conversions. Order is important
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6722 var conversions = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6723
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6724 // types to be ignored
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6725 var ignore = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6727 // temporary object for holding types and conversions, for constructing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6728 // the `typed` function itself
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6729 // TODO: find a more elegant solution for this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6730 var typed = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6731 config: config,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6732 types: types,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6733 conversions: conversions,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6734 ignore: ignore
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6735 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6737 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6738 * Construct the typed function itself with various signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6739 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6740 * Signatures:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6741 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6742 * typed(signatures: Object.<string, function>)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6743 * typed(name: string, signatures: Object.<string, function>)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6744 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6745 typed = _typed('typed', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6746 'Object': function (signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6747 var fns = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6748 for (var signature in signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6749 if (signatures.hasOwnProperty(signature)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6750 fns.push(signatures[signature]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6751 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6752 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6753 var name = getName(fns);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6754
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6755 return _typed(name, signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6756 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6757 'string, Object': _typed,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6758 // TODO: add a signature 'Array.<function>'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6759 '...Function': function (fns) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6760 var err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6761 var name = getName(fns);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6762 var signatures = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6764 for (var i = 0; i < fns.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6765 var fn = fns[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6766
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6767 // test whether this is a typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6768 if (!(typeof fn.signatures === 'object')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6769 err = new TypeError('Function is no typed-function (index: ' + i + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6770 err.data = { index: i };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6771 throw err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6772 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6774 // merge the signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6775 for (var signature in fn.signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6776 if (fn.signatures.hasOwnProperty(signature)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6777 if (signatures.hasOwnProperty(signature)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6778 if (fn.signatures[signature] !== signatures[signature]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6779 err = new Error('Signature "' + signature + '" is defined twice');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6780 err.data = { signature: signature };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6781 throw err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6782 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6783 // else: both signatures point to the same function, that's fine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6784 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6785 signatures[signature] = fn.signatures[signature];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6786 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6787 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6788 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6789 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6790
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6791 return _typed(name, signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6792 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6793 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6795 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6796 * Find a specific signature from a (composed) typed function, for
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6797 * example:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6798 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6799 * typed.find(fn, ['number', 'string'])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6800 * typed.find(fn, 'number, string')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6801 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6802 * Function find only only works for exact matches.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6803 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6804 * @param {Function} fn A typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6805 * @param {string | string[]} signature Signature to be found, can be
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6806 * an array or a comma separated string.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6807 * @return {Function} Returns the matching signature, or
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6808 * throws an errror when no signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6809 * is found.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6810 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6811 function find(fn, signature) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6812 if (!fn.signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6813 throw new TypeError('Function is no typed-function');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6814 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6816 // normalize input
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6817 var arr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6818 if (typeof signature === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6819 arr = signature.split(',');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6820 for (var i = 0; i < arr.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6821 arr[i] = arr[i].trim();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6822 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6823 } else if (Array.isArray(signature)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6824 arr = signature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6825 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6826 throw new TypeError('String array or a comma separated string expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6827 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6829 var str = arr.join(',');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6830
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6831 // find an exact match
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6832 var match = fn.signatures[str];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6833 if (match) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6834 return match;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6835 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6837 // TODO: extend find to match non-exact signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6839 throw new TypeError('Signature not found (signature: ' + (fn.name || 'unnamed') + '(' + arr.join(', ') + '))');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6840 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6841
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6842 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6843 * Convert a given value to another data type.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6844 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6845 * @param {string} type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6846 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6847 function convert(value, type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6848 var from = getTypeOf(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6850 // check conversion is needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6851 if (type === from) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6852 return value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6853 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6855 for (var i = 0; i < typed.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6856 var conversion = typed.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6857 if (conversion.from === from && conversion.to === type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6858 return conversion.convert(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6859 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6860 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6861
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6862 throw new Error('Cannot convert from ' + from + ' to ' + type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6865 // attach types and conversions to the final `typed` function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6866 typed.config = config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6867 typed.types = types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6868 typed.conversions = conversions;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6869 typed.ignore = ignore;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6870 typed.create = create;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6871 typed.find = find;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6872 typed.convert = convert;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6874 // add a type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6875 typed.addType = function (type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6876 if (!type || typeof type.name !== 'string' || typeof type.test !== 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6877 throw new TypeError('Object with properties {name: string, test: function} expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6878 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6880 typed.types.push(type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6881 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6883 // add a conversion
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6884 typed.addConversion = function (conversion) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6885 if (!conversion || typeof conversion.from !== 'string' || typeof conversion.to !== 'string' || typeof conversion.convert !== 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6886 throw new TypeError('Object with properties {from: string, to: string, convert: function} expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6887 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6889 typed.conversions.push(conversion);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6890 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6891
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6892 return typed;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6893 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6895 return create();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6896 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6897
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6898 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6899 /* 72 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6900 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6901
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6902 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6903
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6904 var NumberFormatter = __webpack_require__(73);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6906 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6907 * Test whether value is a number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6908 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6909 * @return {boolean} isNumber
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6910 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6911 exports.isNumber = function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6912 return typeof value === 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6913 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6914
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6915 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6916 * Check if a number is integer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6917 * @param {number | boolean} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6918 * @return {boolean} isInteger
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6919 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6920 exports.isInteger = function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6921 return isFinite(value) ? value == Math.round(value) : false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6922 // Note: we use ==, not ===, as we can have Booleans as well
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6923 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6925 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6926 * Calculate the sign of a number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6927 * @param {number} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6928 * @returns {*}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6929 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6930 exports.sign = Math.sign || function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6931 if (x > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6932 return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6933 } else if (x < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6934 return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6935 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6936 return 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6937 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6938 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6939
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6940 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6941 * Convert a number to a formatted string representation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6942 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6943 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6944 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6945 * format(value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6946 * format(value, options)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6947 * format(value, precision)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6948 * format(value, fn)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6949 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6950 * Where:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6951 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6952 * {number} value The value to be formatted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6953 * {Object} options An object with formatting options. Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6954 * {string} notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6955 * Number notation. Choose from:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6956 * 'fixed' Always use regular number notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6957 * For example '123.40' and '14000000'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6958 * 'exponential' Always use exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6959 * For example '1.234e+2' and '1.4e+7'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6960 * 'engineering' Always use engineering notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6961 * For example '123.4e+0' and '14.0e+6'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6962 * 'auto' (default) Regular number notation for numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6963 * having an absolute value between
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6964 * `lower` and `upper` bounds, and uses
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6965 * exponential notation elsewhere.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6966 * Lower bound is included, upper bound
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6967 * is excluded.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6968 * For example '123.4' and '1.4e7'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6969 * {number} precision A number between 0 and 16 to round
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6970 * the digits of the number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6971 * In case of notations 'exponential' and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6972 * 'auto', `precision` defines the total
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6973 * number of significant digits returned
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6974 * and is undefined by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6975 * In case of notation 'fixed',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6976 * `precision` defines the number of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6977 * significant digits after the decimal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6978 * point, and is 0 by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6979 * {Object} exponential An object containing two parameters,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6980 * {number} lower and {number} upper,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6981 * used by notation 'auto' to determine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6982 * when to return exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6983 * Default values are `lower=1e-3` and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6984 * `upper=1e5`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6985 * Only applicable for notation `auto`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6986 * {Function} fn A custom formatting function. Can be used to override the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6987 * built-in notations. Function `fn` is called with `value` as
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6988 * parameter and must return a string. Is useful for example to
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6989 * format all values inside a matrix in a particular way.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6990 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6991 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6992 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6993 * format(6.4); // '6.4'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6994 * format(1240000); // '1.24e6'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6995 * format(1/3); // '0.3333333333333333'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6996 * format(1/3, 3); // '0.333'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6997 * format(21385, 2); // '21000'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6998 * format(12.071, {notation: 'fixed'}); // '12'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
6999 * format(2.3, {notation: 'fixed', precision: 2}); // '2.30'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7000 * format(52.8, {notation: 'exponential'}); // '5.28e+1'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7001 * format(12345678, {notation: 'engineering'}); // '12.345678e+6'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7002 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7003 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7004 * @param {Object | Function | number} [options]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7005 * @return {string} str The formatted value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7006 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7007 exports.format = function (value, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7008 if (typeof options === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7009 // handle format(value, fn)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7010 return options(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7011 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7012
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7013 // handle special cases
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7014 if (value === Infinity) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7015 return 'Infinity';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7016 } else if (value === -Infinity) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7017 return '-Infinity';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7018 } else if (isNaN(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7019 return 'NaN';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7020 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7022 // default values for options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7023 var notation = 'auto';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7024 var precision = undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7026 if (options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7027 // determine notation from options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7028 if (options.notation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7029 notation = options.notation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7030 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7031
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7032 // determine precision from options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7033 if (exports.isNumber(options)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7034 precision = options;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7035 } else if (options.precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7036 precision = options.precision;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7037 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7039
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7040 // handle the various notations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7041 switch (notation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7042 case 'fixed':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7043 return exports.toFixed(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7045 case 'exponential':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7046 return exports.toExponential(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7048 case 'engineering':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7049 return exports.toEngineering(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7050
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7051 case 'auto':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7052 return exports.toPrecision(value, precision, options && options.exponential)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7054 // remove trailing zeros after the decimal point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7055 .replace(/((\.\d*?)(0+))($|e)/, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7056 var digits = arguments[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7057 var e = arguments[4];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7058 return digits !== '.' ? digits + e : e;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7059 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7060
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7061 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7062 throw new Error('Unknown notation "' + notation + '". ' + 'Choose "auto", "exponential", or "fixed".');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7063 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7064 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7065
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7066 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7067 * Format a number in exponential notation. Like '1.23e+5', '2.3e+0', '3.500e-3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7068 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7069 * @param {number} [precision] Number of digits in formatted output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7070 * If not provided, the maximum available digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7071 * is used.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7072 * @returns {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7073 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7074 exports.toExponential = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7075 return new NumberFormatter(value).toExponential(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7076 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7078 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7079 * Format a number in engineering notation. Like '1.23e+6', '2.3e+0', '3.500e-3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7080 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7081 * @param {number} [precision] Number of digits in formatted output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7082 * If not provided, the maximum available digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7083 * is used.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7084 * @returns {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7085 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7086 exports.toEngineering = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7087 return new NumberFormatter(value).toEngineering(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7088 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7089
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7090 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7091 * Format a number with fixed notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7092 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7093 * @param {number} [precision=0] Optional number of decimals after the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7094 * decimal point. Zero by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7095 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7096 exports.toFixed = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7097 return new NumberFormatter(value).toFixed(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7098 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7100 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7101 * Format a number with a certain precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7102 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7103 * @param {number} [precision=undefined] Optional number of digits.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7104 * @param {{lower: number, upper: number}} [options] By default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7105 * lower = 1e-3 (excl)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7106 * upper = 1e+5 (incl)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7107 * @return {string}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7108 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7109 exports.toPrecision = function (value, precision, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7110 return new NumberFormatter(value).toPrecision(precision, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7111 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7113 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7114 * Count the number of significant digits of a number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7115 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7116 * For example:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7117 * 2.34 returns 3
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7118 * 0.0034 returns 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7119 * 120.5e+30 returns 4
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7120 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7121 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7122 * @return {number} digits Number of significant digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7123 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7124 exports.digits = function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7125 return value.toExponential().replace(/e.*$/, '') // remove exponential notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7126 .replace(/^0\.?0*|\./, '') // remove decimal point and leading zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7127 .length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7128 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7130 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7131 * Minimum number added to one that makes the result different than one
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7132 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7133 exports.DBL_EPSILON = Number.EPSILON || 2.2204460492503130808472633361816E-16;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7135 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7136 * Compares two floating point numbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7137 * @param {number} x First value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7138 * @param {number} y Second value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7139 * @param {number} [epsilon] The maximum relative difference between x and y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7140 * If epsilon is undefined or null, the function will
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7141 * test whether x and y are exactly equal.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7142 * @return {boolean} whether the two numbers are nearly equal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7143 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7144 exports.nearlyEqual = function (x, y, epsilon) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7145 // if epsilon is null or undefined, test whether x and y are exactly equal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7146 if (epsilon == null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7147 return x == y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7148 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7150 // use "==" operator, handles infinities
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7151 if (x == y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7152 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7153 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7155 // NaN
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7156 if (isNaN(x) || isNaN(y)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7157 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7158 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7159
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7160 // at this point x and y should be finite
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7161 if (isFinite(x) && isFinite(y)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7162 // check numbers are very close, needed when comparing numbers near zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7163 var diff = Math.abs(x - y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7164 if (diff < exports.DBL_EPSILON) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7165 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7166 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7167 // use relative error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7168 return diff <= Math.max(Math.abs(x), Math.abs(y)) * epsilon;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7169 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7170 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7172 // Infinite and Number or negative Infinite and positive Infinite cases
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7173 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7174 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7176 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7177 /* 73 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7178 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7180 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7181
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7182 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7183 * Format a number using methods toPrecision, toFixed, toExponential.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7184 * @param {number | string} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7185 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7186 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7188 function NumberFormatter(value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7189 // parse the input value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7190 var match = String(value).toLowerCase().match(/^0*?(-?)(\d+\.?\d*)(e([+-]?\d+))?$/);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7191 if (!match) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7192 throw new SyntaxError('Invalid number');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7193 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7194
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7195 var sign = match[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7196 var coefficients = match[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7197 var exponent = parseFloat(match[4] || '0');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7199 var dot = coefficients.indexOf('.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7200 exponent += dot !== -1 ? dot - 1 : coefficients.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7202 this.sign = sign;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7203 this.coefficients = coefficients.replace('.', '') // remove the dot (must be removed before removing leading zeros)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7204 .replace(/^0*/, function (zeros) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7205 // remove leading zeros, add their count to the exponent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7206 exponent -= zeros.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7207 return '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7208 }).replace(/0*$/, '') // remove trailing zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7209 .split('').map(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7210 return parseInt(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7211 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7213 if (this.coefficients.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7214 this.coefficients.push(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7215 exponent++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7216 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7217
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7218 this.exponent = exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7219 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7221 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7222 * Format a number with engineering notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7223 * @param {number} [precision=0] Optional number of decimals after the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7224 * decimal point. Zero by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7225 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7226 NumberFormatter.prototype.toEngineering = function (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7227 var rounded = this.roundDigits(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7229 var e = rounded.exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7230 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7231
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7232 // find nearest lower multiple of 3 for exponent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7233 var newExp = e % 3 === 0 ? e : e < 0 ? e - 3 - e % 3 : e - e % 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7234
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7235 // concatenate coefficients with necessary zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7236 var significandsDiff = e >= 0 ? e : Math.abs(newExp);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7238 // add zeros if necessary (for ex: 1e+8)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7239 if (c.length - 1 < significandsDiff) c = c.concat(zeros(significandsDiff - (c.length - 1)));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7241 // find difference in exponents
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7242 var expDiff = Math.abs(e - newExp);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7244 var decimalIdx = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7245 var str = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7247 // push decimal index over by expDiff times
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7248 while (--expDiff >= 0) decimalIdx++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7249
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7250 // if all coefficient values are zero after the decimal point, don't add a decimal value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7251 // otherwise concat with the rest of the coefficients
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7252 var decimals = c.slice(decimalIdx).join('');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7253 var decimalVal = decimals.match(/[1-9]/) ? '.' + decimals : '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7255 str = c.slice(0, decimalIdx).join('') + decimalVal;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7257 str += 'e' + (e >= 0 ? '+' : '') + newExp.toString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7258 return rounded.sign + str;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7259 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7261 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7262 * Format a number with fixed notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7263 * @param {number} [precision=0] Optional number of decimals after the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7264 * decimal point. Zero by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7265 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7266 NumberFormatter.prototype.toFixed = function (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7267 var rounded = this.roundDigits(this.exponent + 1 + (precision || 0));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7268 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7269 var p = rounded.exponent + 1; // exponent may have changed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7271 // append zeros if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7272 var pp = p + (precision || 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7273 if (c.length < pp) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7274 c = c.concat(zeros(pp - c.length));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7275 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7277 // prepend zeros if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7278 if (p < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7279 c = zeros(-p + 1).concat(c);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7280 p = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7281 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7282
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7283 // insert a dot if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7284 if (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7285 c.splice(p, 0, p === 0 ? '0.' : '.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7286 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7288 return this.sign + c.join('');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7289 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7290
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7291 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7292 * Format a number in exponential notation. Like '1.23e+5', '2.3e+0', '3.500e-3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7293 * @param {number} [precision] Number of digits in formatted output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7294 * If not provided, the maximum available digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7295 * is used.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7296 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7297 NumberFormatter.prototype.toExponential = function (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7298 // round if needed, else create a clone
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7299 var rounded = precision ? this.roundDigits(precision) : this.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7300 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7301 var e = rounded.exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7303 // append zeros if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7304 if (c.length < precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7305 c = c.concat(zeros(precision - c.length));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7306 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7308 // format as `C.CCCe+EEE` or `C.CCCe-EEE`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7309 var first = c.shift();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7310 return this.sign + first + (c.length > 0 ? '.' + c.join('') : '') + 'e' + (e >= 0 ? '+' : '') + e;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7311 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7312
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7313 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7314 * Format a number with a certain precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7315 * @param {number} [precision=undefined] Optional number of digits.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7316 * @param {{lower: number | undefined, upper: number | undefined}} [options]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7317 * By default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7318 * lower = 1e-3 (excl)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7319 * upper = 1e+5 (incl)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7320 * @return {string}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7321 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7322 NumberFormatter.prototype.toPrecision = function (precision, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7323 // determine lower and upper bound for exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7324 var lower = options && options.lower !== undefined ? options.lower : 1e-3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7325 var upper = options && options.upper !== undefined ? options.upper : 1e+5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7326
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7327 var abs = Math.abs(Math.pow(10, this.exponent));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7328 if (abs < lower || abs >= upper) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7329 // exponential notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7330 return this.toExponential(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7331 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7332 var rounded = precision ? this.roundDigits(precision) : this.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7333 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7334 var e = rounded.exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7335
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7336 // append trailing zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7337 if (c.length < precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7338 c = c.concat(zeros(precision - c.length));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7339 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7341 // append trailing zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7342 // TODO: simplify the next statement
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7343 c = c.concat(zeros(e - c.length + 1 + (c.length < precision ? precision - c.length : 0)));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7344
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7345 // prepend zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7346 c = zeros(-e).concat(c);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7347
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7348 var dot = e > 0 ? e : 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7349 if (dot < c.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7350 c.splice(dot + 1, 0, '.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7351 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7352
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7353 return this.sign + c.join('');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7354 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7355 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7357 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7358 * Crete a clone of the NumberFormatter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7359 * @return {NumberFormatter} Returns a clone of the NumberFormatter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7360 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7361 NumberFormatter.prototype.clone = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7362 var clone = new NumberFormatter('0');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7363 clone.sign = this.sign;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7364 clone.coefficients = this.coefficients.slice(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7365 clone.exponent = this.exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7366 return clone;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7367 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7369 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7370 * Round the number of digits of a number *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7371 * @param {number} precision A positive integer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7372 * @return {NumberFormatter} Returns a new NumberFormatter with the rounded
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7373 * digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7374 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7375 NumberFormatter.prototype.roundDigits = function (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7376 var rounded = this.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7377 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7379 // prepend zeros if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7380 while (precision <= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7381 c.unshift(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7382 rounded.exponent++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7383 precision++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7384 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7385
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7386 if (c.length > precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7387 var removed = c.splice(precision, c.length - precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7389 if (removed[0] >= 5) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7390 var i = precision - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7391 c[i]++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7392 while (c[i] === 10) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7393 c.pop();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7394 if (i === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7395 c.unshift(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7396 rounded.exponent++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7397 i++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7398 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7399 i--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7400 c[i]++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7401 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7402 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7403 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7405 return rounded;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7406 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7407
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7408 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7409 * Create an array filled with zeros.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7410 * @param {number} length
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7411 * @return {Array}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7412 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7413 function zeros(length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7414 var arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7415 for (var i = 0; i < length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7416 arr.push(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7417 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7418 return arr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7419 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7421 module.exports = NumberFormatter;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7422
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7423 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7424 /* 74 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7425 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7427 var Emitter = __webpack_require__(75);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7428
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7429 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7430 * Extend given object with emitter functions `on`, `off`, `once`, `emit`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7431 * @param {Object} obj
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7432 * @return {Object} obj
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7433 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7434 exports.mixin = function (obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7435 // create event emitter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7436 var emitter = new Emitter();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7437
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7438 // bind methods to obj (we don't want to expose the emitter.e Array...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7439 obj.on = emitter.on.bind(emitter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7440 obj.off = emitter.off.bind(emitter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7441 obj.once = emitter.once.bind(emitter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7442 obj.emit = emitter.emit.bind(emitter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7443
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7444 return obj;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7445 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7446
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7447 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7448 /* 75 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7449 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7451 function E() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7452 // Keep this empty so it's easier to inherit from
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7453 // (via https://github.com/lipsmack from https://github.com/scottcorgan/tiny-emitter/issues/3)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7454 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7456 E.prototype = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7457 on: function (name, callback, ctx) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7458 var e = this.e || (this.e = {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7460 (e[name] || (e[name] = [])).push({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7461 fn: callback,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7462 ctx: ctx
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7463 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7465 return this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7466 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7468 once: function (name, callback, ctx) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7469 var self = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7470 function listener() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7471 self.off(name, listener);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7472 callback.apply(ctx, arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7473 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7474
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7475 listener._ = callback;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7476 return this.on(name, listener, ctx);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7477 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7478
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7479 emit: function (name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7480 var data = [].slice.call(arguments, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7481 var evtArr = ((this.e || (this.e = {}))[name] || []).slice();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7482 var i = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7483 var len = evtArr.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7484
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7485 for (i; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7486 evtArr[i].fn.apply(evtArr[i].ctx, data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7487 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7489 return this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7490 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7492 off: function (name, callback) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7493 var e = this.e || (this.e = {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7494 var evts = e[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7495 var liveEvents = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7496
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7497 if (evts && callback) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7498 for (var i = 0, len = evts.length; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7499 if (evts[i].fn !== callback && evts[i].fn._ !== callback) liveEvents.push(evts[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7500 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7501 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7502
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7503 // Remove event from queue to prevent memory leak
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7504 // Suggested by https://github.com/lazd
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7505 // Ref: https://github.com/scottcorgan/tiny-emitter/commit/c6ebfaa9bc973b33d110a84a307742b7cf94c953#commitcomment-5024910
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7507 liveEvents.length ? e[name] = liveEvents : delete e[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7509 return this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7510 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7511 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7513 module.exports = E;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7515 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7516 /* 76 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7517 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7519 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7521 var lazy = __webpack_require__(69).lazy;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7522 var isFactory = __webpack_require__(69).isFactory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7523 var traverse = __webpack_require__(69).traverse;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7524 var extend = __webpack_require__(69).extend;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7525 var ArgumentsError = __webpack_require__(77);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7527 function factory(type, config, load, typed, math) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7528 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7529 * Import functions from an object or a module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7530 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7531 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7532 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7533 * math.import(object)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7534 * math.import(object, options)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7535 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7536 * Where:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7537 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7538 * - `object: Object`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7539 * An object with functions to be imported.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7540 * - `options: Object` An object with import options. Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7541 * - `override: boolean`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7542 * If true, existing functions will be overwritten. False by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7543 * - `silent: boolean`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7544 * If true, the function will not throw errors on duplicates or invalid
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7545 * types. False by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7546 * - `wrap: boolean`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7547 * If true, the functions will be wrapped in a wrapper function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7548 * which converts data types like Matrix to primitive data types like Array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7549 * The wrapper is needed when extending math.js with libraries which do not
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7550 * support these data type. False by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7551 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7552 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7553 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7554 * // define new functions and variables
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7555 * math.import({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7556 * myvalue: 42,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7557 * hello: function (name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7558 * return 'hello, ' + name + '!';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7559 * }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7560 * });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7561 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7562 * // use the imported function and variable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7563 * math.myvalue * 2; // 84
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7564 * math.hello('user'); // 'hello, user!'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7565 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7566 * // import the npm module 'numbers'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7567 * // (must be installed first with `npm install numbers`)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7568 * math.import(require('numbers'), {wrap: true});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7569 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7570 * math.fibonacci(7); // returns 13
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7571 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7572 * @param {Object | Array} object Object with functions to be imported.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7573 * @param {Object} [options] Import options.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7574 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7575 function math_import(object, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7576 var num = arguments.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7577 if (num != 1 && num != 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7578 throw new ArgumentsError('import', num, 1, 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7579 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7581 if (!options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7582 options = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7583 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7585 if (isFactory(object)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7586 _importFactory(object, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7587 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7588 // TODO: allow a typed-function with name too
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7589 else if (Array.isArray(object)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7590 object.forEach(function (entry) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7591 math_import(entry, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7592 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7593 } else if (typeof object === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7594 // a map with functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7595 for (var name in object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7596 if (object.hasOwnProperty(name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7597 var value = object[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7598 if (isSupportedType(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7599 _import(name, value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7600 } else if (isFactory(object)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7601 _importFactory(object, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7602 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7603 math_import(value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7604 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7605 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7606 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7607 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7608 if (!options.silent) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7609 throw new TypeError('Factory, Object, or Array expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7610 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7611 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7612 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7614 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7615 * Add a property to the math namespace and create a chain proxy for it.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7616 * @param {string} name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7617 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7618 * @param {Object} options See import for a description of the options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7619 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7620 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7621 function _import(name, value, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7622 if (options.wrap && typeof value === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7623 // create a wrapper around the function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7624 value = _wrap(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7625 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7626
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7627 if (isTypedFunction(math[name]) && isTypedFunction(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7628 if (options.override) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7629 // give the typed function the right name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7630 value = typed(name, value.signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7631 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7632 // merge the existing and typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7633 value = typed(math[name], value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7634 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7636 math[name] = value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7637 _importTransform(name, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7638 math.emit('import', name, function resolver() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7639 return value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7640 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7641 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7642 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7644 if (math[name] === undefined || options.override) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7645 math[name] = value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7646 _importTransform(name, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7647 math.emit('import', name, function resolver() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7648 return value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7649 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7650 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7651 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7653 if (!options.silent) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7654 throw new Error('Cannot import "' + name + '": already exists');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7655 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7656 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7658 function _importTransform(name, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7659 if (value && typeof value.transform === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7660 math.expression.transform[name] = value.transform;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7661 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7662 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7663
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7664 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7665 * Create a wrapper a round an function which converts the arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7666 * to their primitive values (like convert a Matrix to Array)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7667 * @param {Function} fn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7668 * @return {Function} Returns the wrapped function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7669 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7670 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7671 function _wrap(fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7672 var wrapper = function wrapper() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7673 var args = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7674 for (var i = 0, len = arguments.length; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7675 var arg = arguments[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7676 args[i] = arg && arg.valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7677 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7678 return fn.apply(math, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7679 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7681 if (fn.transform) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7682 wrapper.transform = fn.transform;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7683 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7685 return wrapper;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7686 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7687
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7688 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7689 * Import an instance of a factory into math.js
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7690 * @param {{factory: Function, name: string, path: string, math: boolean}} factory
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7691 * @param {Object} options See import for a description of the options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7692 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7693 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7694 function _importFactory(factory, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7695 if (typeof factory.name === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7696 var name = factory.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7697 var namespace = factory.path ? traverse(math, factory.path) : math;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7698 var existing = namespace.hasOwnProperty(name) ? namespace[name] : undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7700 var resolver = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7701 var instance = load(factory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7702
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7703 if (isTypedFunction(existing) && isTypedFunction(instance)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7704 if (options.override) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7705 // replace the existing typed function (nothing to do)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7706 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7707 // merge the existing and new typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7708 instance = typed(existing, instance);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7709 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7710
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7711 return instance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7714 if (existing === undefined || options.override) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7715 return instance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7716 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7718 if (!options.silent) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7719 throw new Error('Cannot import "' + name + '": already exists');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7720 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7721 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7723 if (factory.lazy !== false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7724 lazy(namespace, name, resolver);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7725 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7726 namespace[name] = resolver();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7727 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7729 math.emit('import', name, resolver, factory.path);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7730 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7731 // unnamed factory.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7732 // no lazy loading
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7733 load(factory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7734 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7735 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7737 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7738 * Check whether given object is a type which can be imported
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7739 * @param {Function | number | string | boolean | null | Unit | Complex} object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7740 * @return {boolean}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7741 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7742 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7743 function isSupportedType(object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7744 return typeof object == 'function' || typeof object === 'number' || typeof object === 'string' || typeof object === 'boolean' || object === null || object && object.isUnit === true || object && object.isComplex === true || object && object.isBigNumber === true || object && object.isFraction === true || object && object.isMatrix === true || object && Array.isArray(object) === true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7745 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7746
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7747 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7748 * Test whether a given thing is a typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7749 * @param {*} fn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7750 * @return {boolean} Returns true when `fn` is a typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7751 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7752 function isTypedFunction(fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7753 return typeof fn === 'function' && typeof fn.signatures === 'object';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7754 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7755
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7756 return math_import;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7757 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7759 exports.math = true; // request access to the math namespace as 5th argument of the factory function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7760 exports.name = 'import';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7761 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7762 exports.lazy = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7764 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7765 /* 77 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7766 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7768 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7770 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7771 * Create a syntax error with the message:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7772 * 'Wrong number of arguments in function <fn> (<count> provided, <min>-<max> expected)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7773 * @param {string} fn Function name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7774 * @param {number} count Actual argument count
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7775 * @param {number} min Minimum required argument count
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7776 * @param {number} [max] Maximum required argument count
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7777 * @extends Error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7778 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7780 function ArgumentsError(fn, count, min, max) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7781 if (!(this instanceof ArgumentsError)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7782 throw new SyntaxError('Constructor must be called with the new operator');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7783 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7785 this.fn = fn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7786 this.count = count;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7787 this.min = min;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7788 this.max = max;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7790 this.message = 'Wrong number of arguments in function ' + fn + ' (' + count + ' provided, ' + min + (max != undefined ? '-' + max : '') + ' expected)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7792 this.stack = new Error().stack;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7793 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7795 ArgumentsError.prototype = new Error();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7796 ArgumentsError.prototype.constructor = Error;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7797 ArgumentsError.prototype.name = 'ArgumentsError';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7798 ArgumentsError.prototype.isArgumentsError = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7800 module.exports = ArgumentsError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7802 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7803 /* 78 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7804 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7806 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7807
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7808 var object = __webpack_require__(69);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7810 function factory(type, config, load, typed, math) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7811 var MATRIX = ['Matrix', 'Array']; // valid values for option matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7812 var NUMBER = ['number', 'BigNumber', 'Fraction']; // valid values for option number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7813
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7814 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7815 * Set configuration options for math.js, and get current options.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7816 * Will emit a 'config' event, with arguments (curr, prev).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7817 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7818 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7819 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7820 * math.config(config: Object): Object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7821 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7822 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7823 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7824 * math.config().number; // outputs 'number'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7825 * math.eval('0.4'); // outputs number 0.4
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7826 * math.config({number: 'Fraction'});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7827 * math.eval('0.4'); // outputs Fraction 2/5
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7828 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7829 * @param {Object} [options] Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7830 * {number} epsilon
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7831 * Minimum relative difference between two
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7832 * compared values, used by all comparison functions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7833 * {string} matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7834 * A string 'Matrix' (default) or 'Array'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7835 * {string} number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7836 * A string 'number' (default), 'BigNumber', or 'Fraction'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7837 * {number} precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7838 * The number of significant digits for BigNumbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7839 * Not applicable for Numbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7840 * {string} parenthesis
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7841 * How to display parentheses in LaTeX and string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7842 * output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7843 * @return {Object} Returns the current configuration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7844 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7845 function _config(options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7846 if (options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7847 var prev = object.clone(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7849 // validate some of the options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7850 validateOption(options, 'matrix', MATRIX);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7851 validateOption(options, 'number', NUMBER);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7853 // merge options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7854 object.deepExtend(config, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7855
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7856 var curr = object.clone(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7857
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7858 // emit 'config' event
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7859 math.emit('config', curr, prev);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7860
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7861 return curr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7862 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7863 return object.clone(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7864 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7865 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7866
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7867 // attach the valid options to the function so they can be extended
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7868 _config.MATRIX = MATRIX;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7869 _config.NUMBER = NUMBER;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7871 return _config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7872 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7874 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7875 * Test whether an Array contains a specific item.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7876 * @param {Array.<string>} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7877 * @param {string} item
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7878 * @return {boolean}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7879 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7880 function contains(array, item) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7881 return array.indexOf(item) !== -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7882 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7883
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7884 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7885 * Find a string in an array. Case insensitive search
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7886 * @param {Array.<string>} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7887 * @param {string} item
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7888 * @return {number} Returns the index when found. Returns -1 when not found
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7889 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7890 function findIndex(array, item) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7891 return array.map(function (i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7892 return i.toLowerCase();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7893 }).indexOf(item.toLowerCase());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7894 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7895
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7896 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7897 * Validate an option
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7898 * @param {Object} options Object with options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7899 * @param {string} name Name of the option to validate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7900 * @param {Array.<string>} values Array with valid values for this option
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7901 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7902 function validateOption(options, name, values) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7903 if (options[name] !== undefined && !contains(values, options[name])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7904 var index = findIndex(values, options[name]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7905 if (index !== -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7906 // right value, wrong casing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7907 // TODO: lower case values are deprecated since v3, remove this warning some day.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7908 console.warn('Warning: Wrong casing for configuration option "' + name + '", should be "' + values[index] + '" instead of "' + options[name] + '".');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7910 options[name] = values[index]; // change the option to the right casing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7911 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7912 // unknown value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7913 console.warn('Warning: Unknown value "' + options[name] + '" for configuration option "' + name + '". Available options: ' + values.map(JSON.stringify).join(', ') + '.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7914 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7915 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7916 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7918 exports.name = 'config';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7919 exports.math = true; // request the math namespace as fifth argument
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7920 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7922 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7923 /* 79 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7924 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7925
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7926 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7928 var deepMap = __webpack_require__(80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7929
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7930 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7931 var gamma = load(__webpack_require__(81));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7932 var latex = __webpack_require__(89);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7934 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7935 * Compute the factorial of a value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7936 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7937 * Factorial only supports an integer value as argument.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7938 * For matrices, the function is evaluated element wise.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7939 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7940 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7941 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7942 * math.factorial(n)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7943 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7944 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7945 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7946 * math.factorial(5); // returns 120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7947 * math.factorial(3); // returns 6
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7948 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7949 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7950 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7951 * combinations, gamma, permutations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7952 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7953 * @param {number | BigNumber | Array | Matrix} n An integer number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7954 * @return {number | BigNumber | Array | Matrix} The factorial of `n`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7955 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7956 var factorial = typed('factorial', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7957 'number': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7958 if (n < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7959 throw new Error('Value must be non-negative');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7960 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7961
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7962 return gamma(n + 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7963 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7965 'BigNumber': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7966 if (n.isNegative()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7967 throw new Error('Value must be non-negative');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7968 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7969
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7970 return gamma(n.plus(1));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7971 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7972
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7973 'Array | Matrix': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7974 return deepMap(n, factorial);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7975 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7976 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7978 factorial.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7979 1: '\\left(${args[0]}\\right)' + latex.operators['factorial']
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7980 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7981
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7982 return factorial;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7983 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7984
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7985 exports.name = 'factorial';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7986 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7988 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7989 /* 80 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7990 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7992 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7994 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7995 * Execute the callback function element wise for each element in array and any
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7996 * nested array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7997 * Returns an array with the results
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7998 * @param {Array | Matrix} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
7999 * @param {Function} callback The callback is called with two parameters:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8000 * value1 and value2, which contain the current
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8001 * element of both arrays.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8002 * @param {boolean} [skipZeros] Invoke callback function for non-zero values only.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8003 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8004 * @return {Array | Matrix} res
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8005 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8007 module.exports = function deepMap(array, callback, skipZeros) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8008 if (array && typeof array.map === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8009 // TODO: replace array.map with a for loop to improve performance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8010 return array.map(function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8011 return deepMap(x, callback, skipZeros);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8012 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8013 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8014 return callback(array);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8015 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8016 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8018 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8019 /* 81 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8020 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8022 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8024 var deepMap = __webpack_require__(80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8025 var isInteger = __webpack_require__(72).isInteger;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8027 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8028 var multiply = load(__webpack_require__(82));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8029 var pow = load(__webpack_require__(97));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8031 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8032 * Compute the gamma function of a value using Lanczos approximation for
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8033 * small values, and an extended Stirling approximation for large values.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8034 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8035 * For matrices, the function is evaluated element wise.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8036 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8037 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8038 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8039 * math.gamma(n)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8040 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8041 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8042 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8043 * math.gamma(5); // returns 24
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8044 * math.gamma(-0.5); // returns -3.5449077018110335
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8045 * math.gamma(math.i); // returns -0.15494982830180973 - 0.49801566811835596i
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8046 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8047 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8048 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8049 * combinations, factorial, permutations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8050 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8051 * @param {number | Array | Matrix} n A real or complex number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8052 * @return {number | Array | Matrix} The gamma of `n`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8053 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8054 var gamma = typed('gamma', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8055 'number': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8056 var t, x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8058 if (isInteger(n)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8059 if (n <= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8060 return isFinite(n) ? Infinity : NaN;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8061 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8062
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8063 if (n > 171) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8064 return Infinity; // Will overflow
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8065 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8067 var value = n - 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8068 var res = n - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8069 while (value > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8070 res *= value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8071 value--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8072 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8073
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8074 if (res == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8075 res = 1; // 0! is per definition 1
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8076 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8078 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8079 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8080
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8081 if (n < 0.5) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8082 return Math.PI / (Math.sin(Math.PI * n) * gamma(1 - n));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8083 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8084
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8085 if (n >= 171.35) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8086 return Infinity; // will overflow
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8087 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8089 if (n > 85.0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8090 // Extended Stirling Approx
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8091 var twoN = n * n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8092 var threeN = twoN * n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8093 var fourN = threeN * n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8094 var fiveN = fourN * n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8095 return Math.sqrt(2 * Math.PI / n) * Math.pow(n / Math.E, n) * (1 + 1 / (12 * n) + 1 / (288 * twoN) - 139 / (51840 * threeN) - 571 / (2488320 * fourN) + 163879 / (209018880 * fiveN) + 5246819 / (75246796800 * fiveN * n));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8096 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8097
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8098 --n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8099 x = p[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8100 for (var i = 1; i < p.length; ++i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8101 x += p[i] / (n + i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8102 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8103
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8104 t = n + g + 0.5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8105 return Math.sqrt(2 * Math.PI) * Math.pow(t, n + 0.5) * Math.exp(-t) * x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8106 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8107
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8108 'Complex': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8109 var t, x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8110
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8111 if (n.im == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8112 return gamma(n.re);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8113 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8115 n = new type.Complex(n.re - 1, n.im);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8116 x = new type.Complex(p[0], 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8117 for (var i = 1; i < p.length; ++i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8118 var real = n.re + i; // x += p[i]/(n+i)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8119 var den = real * real + n.im * n.im;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8120 if (den != 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8121 x.re += p[i] * real / den;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8122 x.im += -(p[i] * n.im) / den;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8123 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8124 x.re = p[i] < 0 ? -Infinity : Infinity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8125 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8126 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8128 t = new type.Complex(n.re + g + 0.5, n.im);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8129 var twoPiSqrt = Math.sqrt(2 * Math.PI);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8131 n.re += 0.5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8132 var result = pow(t, n);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8133 if (result.im == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8134 // sqrt(2*PI)*result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8135 result.re *= twoPiSqrt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8136 } else if (result.re == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8137 result.im *= twoPiSqrt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8138 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8139 result.re *= twoPiSqrt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8140 result.im *= twoPiSqrt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8141 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8143 var r = Math.exp(-t.re); // exp(-t)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8144 t.re = r * Math.cos(-t.im);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8145 t.im = r * Math.sin(-t.im);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8147 return multiply(multiply(result, t), x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8148 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8150 'BigNumber': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8151 if (n.isInteger()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8152 return n.isNegative() || n.isZero() ? new type.BigNumber(Infinity) : bigFactorial(n.minus(1));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8153 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8155 if (!n.isFinite()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8156 return new type.BigNumber(n.isNegative() ? NaN : Infinity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8157 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8159 throw new Error('Integer BigNumber expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8160 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8162 'Array | Matrix': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8163 return deepMap(n, gamma);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8164 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8165 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8167 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8168 * Calculate factorial for a BigNumber
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8169 * @param {BigNumber} n
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8170 * @returns {BigNumber} Returns the factorial of n
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8171 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8172 function bigFactorial(n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8173 if (n.isZero()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8174 return new type.BigNumber(1); // 0! is per definition 1
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8175 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8176
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8177 var precision = config.precision + (Math.log(n.toNumber()) | 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8178 var Big = type.BigNumber.clone({ precision: precision });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8180 var res = new Big(n);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8181 var value = n.toNumber() - 1; // number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8182 while (value > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8183 res = res.times(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8184 value--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8185 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8187 return new type.BigNumber(res.toPrecision(type.BigNumber.precision));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8188 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8190 gamma.toTex = { 1: '\\Gamma\\left(${args[0]}\\right)' };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8192 return gamma;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8193 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8194
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8195 // TODO: comment on the variables g and p
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8197 var g = 4.7421875;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8199 var p = [0.99999999999999709182, 57.156235665862923517, -59.597960355475491248, 14.136097974741747174, -0.49191381609762019978, 0.33994649984811888699e-4, 0.46523628927048575665e-4, -0.98374475304879564677e-4, 0.15808870322491248884e-3, -0.21026444172410488319e-3, 0.21743961811521264320e-3, -0.16431810653676389022e-3, 0.84418223983852743293e-4, -0.26190838401581408670e-4, 0.36899182659531622704e-5];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8201 exports.name = 'gamma';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8202 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8204 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8205 /* 82 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8206 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8208 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8210 var extend = __webpack_require__(69).extend;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8211 var array = __webpack_require__(83);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8213 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8214 var latex = __webpack_require__(89);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8216 var matrix = load(__webpack_require__(90));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8217 var addScalar = load(__webpack_require__(91));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8218 var multiplyScalar = load(__webpack_require__(92));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8219 var equalScalar = load(__webpack_require__(93));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8221 var algorithm11 = load(__webpack_require__(95));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8222 var algorithm14 = load(__webpack_require__(96));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8224 var DenseMatrix = type.DenseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8225 var SparseMatrix = type.SparseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8227 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8228 * Multiply two values, `x * y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8229 * For matrices, the matrix product is calculated.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8230 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8231 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8232 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8233 * math.multiply(x, y)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8234 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8235 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8236 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8237 * math.multiply(4, 5.2); // returns number 20.8
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8238 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8239 * var a = math.complex(2, 3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8240 * var b = math.complex(4, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8241 * math.multiply(a, b); // returns Complex 5 + 14i
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8242 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8243 * var c = [[1, 2], [4, 3]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8244 * var d = [[1, 2, 3], [3, -4, 7]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8245 * math.multiply(c, d); // returns Array [[7, -6, 17], [13, -4, 33]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8246 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8247 * var e = math.unit('2.1 km');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8248 * math.multiply(3, e); // returns Unit 6.3 km
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8249 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8250 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8251 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8252 * divide
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8253 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8254 * @param {number | BigNumber | Fraction | Complex | Unit | Array | Matrix} x First value to multiply
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8255 * @param {number | BigNumber | Fraction | Complex | Unit | Array | Matrix} y Second value to multiply
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8256 * @return {number | BigNumber | Fraction | Complex | Unit | Array | Matrix} Multiplication of `x` and `y`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8257 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8258 var multiply = typed('multiply', extend({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8259 // we extend the signatures of multiplyScalar with signatures dealing with matrices
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8261 'Array, Array': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8262 // check dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8263 _validateMatrixDimensions(array.size(x), array.size(y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8265 // use dense matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8266 var m = multiply(matrix(x), matrix(y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8267 // return array or scalar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8268 return m && m.isMatrix === true ? m.valueOf() : m;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8269 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8271 'Matrix, Matrix': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8272 // dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8273 var xsize = x.size();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8274 var ysize = y.size();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8275
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8276 // check dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8277 _validateMatrixDimensions(xsize, ysize);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8278
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8279 // process dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8280 if (xsize.length === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8281 // process y dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8282 if (ysize.length === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8283 // Vector * Vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8284 return _multiplyVectorVector(x, y, xsize[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8285 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8286 // Vector * Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8287 return _multiplyVectorMatrix(x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8288 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8289 // process y dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8290 if (ysize.length === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8291 // Matrix * Vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8292 return _multiplyMatrixVector(x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8293 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8294 // Matrix * Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8295 return _multiplyMatrixMatrix(x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8296 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8298 'Matrix, Array': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8299 // use Matrix * Matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8300 return multiply(x, matrix(y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8301 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8303 'Array, Matrix': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8304 // use Matrix * Matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8305 return multiply(matrix(x, y.storage()), y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8306 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8308 'Matrix, any': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8309 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8310 var c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8311
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8312 // process storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8313 switch (x.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8314 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8315 c = algorithm11(x, y, multiplyScalar, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8316 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8317 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8318 c = algorithm14(x, y, multiplyScalar, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8319 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8320 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8321 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8322 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8323
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8324 'any, Matrix': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8325 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8326 var c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8327 // check storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8328 switch (y.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8329 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8330 c = algorithm11(y, x, multiplyScalar, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8331 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8332 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8333 c = algorithm14(y, x, multiplyScalar, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8334 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8335 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8336 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8337 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8338
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8339 'Array, any': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8340 // use matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8341 return algorithm14(matrix(x), y, multiplyScalar, false).valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8342 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8344 'any, Array': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8345 // use matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8346 return algorithm14(matrix(y), x, multiplyScalar, true).valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8348 }, multiplyScalar.signatures));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8350 var _validateMatrixDimensions = function (size1, size2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8351 // check left operand dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8352 switch (size1.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8353 case 1:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8354 // check size2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8355 switch (size2.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8356 case 1:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8357 // Vector x Vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8358 if (size1[0] !== size2[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8359 // throw error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8360 throw new RangeError('Dimension mismatch in multiplication. Vectors must have the same length');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8361 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8362 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8363 case 2:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8364 // Vector x Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8365 if (size1[0] !== size2[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8366 // throw error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8367 throw new RangeError('Dimension mismatch in multiplication. Vector length (' + size1[0] + ') must match Matrix rows (' + size2[0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8368 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8369 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8370 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8371 throw new Error('Can only multiply a 1 or 2 dimensional matrix (Matrix B has ' + size2.length + ' dimensions)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8372 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8373 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8374 case 2:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8375 // check size2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8376 switch (size2.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8377 case 1:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8378 // Matrix x Vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8379 if (size1[1] !== size2[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8380 // throw error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8381 throw new RangeError('Dimension mismatch in multiplication. Matrix columns (' + size1[1] + ') must match Vector length (' + size2[0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8382 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8383 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8384 case 2:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8385 // Matrix x Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8386 if (size1[1] !== size2[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8387 // throw error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8388 throw new RangeError('Dimension mismatch in multiplication. Matrix A columns (' + size1[1] + ') must match Matrix B rows (' + size2[0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8389 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8390 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8391 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8392 throw new Error('Can only multiply a 1 or 2 dimensional matrix (Matrix B has ' + size2.length + ' dimensions)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8393 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8394 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8395 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8396 throw new Error('Can only multiply a 1 or 2 dimensional matrix (Matrix A has ' + size1.length + ' dimensions)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8397 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8398 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8400 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8401 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8402 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8403 * @param {Matrix} a Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8404 * @param {Matrix} b Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8405 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8406 * @return {number} Scalar value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8407 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8408 var _multiplyVectorVector = function (a, b, n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8409 // check empty vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8410 if (n === 0) throw new Error('Cannot multiply two empty vectors');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8412 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8413 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8414 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8415 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8416 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8417 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8418
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8419 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8420 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8421 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8422 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8423 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8424 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8425
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8426 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8427 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8428 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8429 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8430 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8431 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8432 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8433 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8435 // result (do not initialize it with zero)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8436 var c = mf(adata[0], bdata[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8437 // loop data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8438 for (var i = 1; i < n; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8439 // multiply and accumulate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8440 c = af(c, mf(adata[i], bdata[i]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8441 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8442 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8443 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8444
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8445 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8446 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8447 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8448 * @param {Matrix} a Dense Vector (M)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8449 * @param {Matrix} b Matrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8450 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8451 * @return {Matrix} Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8452 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8453 var _multiplyVectorMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8454 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8455 switch (b.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8456 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8457 return _multiplyVectorDenseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8458 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8459 throw new Error('Not implemented');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8460 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8461
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8462 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8463 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8464 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8465 * @param {Matrix} a Dense Vector (M)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8466 * @param {Matrix} b Dense Matrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8467 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8468 * @return {Matrix} Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8469 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8470 var _multiplyVectorDenseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8471 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8472 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8473 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8474 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8475 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8476 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8477 var bsize = b._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8478 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8479 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8480 var alength = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8481 var bcolumns = bsize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8483 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8484 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8485 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8486 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8487 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8488 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8490 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8491 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8492 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8493 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8494 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8495 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8496 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8497 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8499 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8500 var c = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8501
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8502 // loop matrix columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8503 for (var j = 0; j < bcolumns; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8504 // sum (do not initialize it with zero)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8505 var sum = mf(adata[0], bdata[0][j]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8506 // loop vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8507 for (var i = 1; i < alength; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8508 // multiply & accumulate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8509 sum = af(sum, mf(adata[i], bdata[i][j]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8510 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8511 c[j] = sum;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8512 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8513
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8514 // return matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8515 return new DenseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8516 data: c,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8517 size: [bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8518 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8519 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8520 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8521
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8522 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8523 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8524 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8525 * @param {Matrix} a Matrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8526 * @param {Matrix} b Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8527 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8528 * @return {Matrix} Dense Vector (M)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8529 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8530 var _multiplyMatrixVector = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8531 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8532 switch (a.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8533 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8534 return _multiplyDenseMatrixVector(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8535 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8536 return _multiplySparseMatrixVector(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8537 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8538 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8540 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8541 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8542 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8543 * @param {Matrix} a Matrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8544 * @param {Matrix} b Matrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8545 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8546 * @return {Matrix} Matrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8547 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8548 var _multiplyMatrixMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8549 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8550 switch (a.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8551 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8552 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8553 switch (b.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8554 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8555 return _multiplyDenseMatrixDenseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8556 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8557 return _multiplyDenseMatrixSparseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8558 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8559 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8560 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8561 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8562 switch (b.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8563 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8564 return _multiplySparseMatrixDenseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8565 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8566 return _multiplySparseMatrixSparseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8567 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8568 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8569 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8570 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8572 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8573 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8574 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8575 * @param {Matrix} a DenseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8576 * @param {Matrix} b Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8577 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8578 * @return {Matrix} Dense Vector (M)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8579 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8580 var _multiplyDenseMatrixVector = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8581 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8582 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8583 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8584 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8585 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8586 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8587 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8588 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8589 var arows = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8590 var acolumns = asize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8591
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8592 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8593 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8594 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8595 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8596 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8597 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8598
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8599 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8600 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8601 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8602 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8603 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8604 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8605 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8606 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8607
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8608 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8609 var c = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8611 // loop matrix a rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8612 for (var i = 0; i < arows; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8613 // current row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8614 var row = adata[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8615 // sum (do not initialize it with zero)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8616 var sum = mf(row[0], bdata[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8617 // loop matrix a columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8618 for (var j = 1; j < acolumns; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8619 // multiply & accumulate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8620 sum = af(sum, mf(row[j], bdata[j]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8621 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8622 c[i] = sum;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8623 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8625 // return matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8626 return new DenseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8627 data: c,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8628 size: [arows],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8629 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8630 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8631 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8633 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8634 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8635 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8636 * @param {Matrix} a DenseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8637 * @param {Matrix} b DenseMatrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8638 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8639 * @return {Matrix} DenseMatrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8640 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8641 var _multiplyDenseMatrixDenseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8642 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8643 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8644 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8645 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8646 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8647 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8648 var bsize = b._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8649 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8650 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8651 var arows = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8652 var acolumns = asize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8653 var bcolumns = bsize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8654
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8655 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8656 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8657 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8658 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8659 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8660 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8662 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8663 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8664 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8665 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8666 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8667 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8668 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8669 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8670
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8671 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8672 var c = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8674 // loop matrix a rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8675 for (var i = 0; i < arows; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8676 // current row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8677 var row = adata[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8678 // initialize row array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8679 c[i] = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8680 // loop matrix b columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8681 for (var j = 0; j < bcolumns; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8682 // sum (avoid initializing sum to zero)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8683 var sum = mf(row[0], bdata[0][j]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8684 // loop matrix a columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8685 for (var x = 1; x < acolumns; x++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8686 // multiply & accumulate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8687 sum = af(sum, mf(row[x], bdata[x][j]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8688 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8689 c[i][j] = sum;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8690 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8691 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8693 // return matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8694 return new DenseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8695 data: c,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8696 size: [arows, bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8697 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8698 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8699 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8700
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8701 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8702 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8703 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8704 * @param {Matrix} a DenseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8705 * @param {Matrix} b SparseMatrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8706 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8707 * @return {Matrix} SparseMatrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8708 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8709 var _multiplyDenseMatrixSparseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8710 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8711 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8712 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8713 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8714 // b sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8715 var bvalues = b._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8716 var bindex = b._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8717 var bptr = b._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8718 var bsize = b._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8719 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8720 // validate b matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8721 if (!bvalues) throw new Error('Cannot multiply Dense Matrix times Pattern only Matrix');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8722 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8723 var arows = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8724 var bcolumns = bsize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8725
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8726 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8727 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8728 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8729 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8730 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8731 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8732 // equalScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8733 var eq = equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8734 // zero value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8735 var zero = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8737 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8738 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8739 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8740 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8741 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8742 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8743 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8744 eq = typed.find(equalScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8745 // convert 0 to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8746 zero = typed.convert(0, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8747 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8748
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8749 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8750 var cvalues = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8751 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8752 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8753 // c matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8754 var c = new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8755 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8756 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8757 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8758 size: [arows, bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8759 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8760 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8762 // loop b columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8763 for (var jb = 0; jb < bcolumns; jb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8764 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8765 cptr[jb] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8766 // indeces in column jb
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8767 var kb0 = bptr[jb];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8768 var kb1 = bptr[jb + 1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8769 // do not process column jb if no data exists
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8770 if (kb1 > kb0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8771 // last row mark processed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8772 var last = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8773 // loop a rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8774 for (var i = 0; i < arows; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8775 // column mark
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8776 var mark = i + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8777 // C[i, jb]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8778 var cij;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8779 // values in b column j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8780 for (var kb = kb0; kb < kb1; kb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8781 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8782 var ib = bindex[kb];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8783 // check value has been initialized
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8784 if (last !== mark) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8785 // first value in column jb
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8786 cij = mf(adata[i][ib], bvalues[kb]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8787 // update mark
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8788 last = mark;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8789 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8790 // accumulate value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8791 cij = af(cij, mf(adata[i][ib], bvalues[kb]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8792 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8793 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8794 // check column has been processed and value != 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8795 if (last === mark && !eq(cij, zero)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8796 // push row & value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8797 cindex.push(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8798 cvalues.push(cij);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8799 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8800 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8801 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8802 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8803 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8804 cptr[bcolumns] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8806 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8807 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8808 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8810 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8811 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8812 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8813 * @param {Matrix} a SparseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8814 * @param {Matrix} b Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8815 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8816 * @return {Matrix} SparseMatrix (M, 1)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8817 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8818 var _multiplySparseMatrixVector = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8819 // a sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8820 var avalues = a._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8821 var aindex = a._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8822 var aptr = a._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8823 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8824 // validate a matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8825 if (!avalues) throw new Error('Cannot multiply Pattern only Matrix times Dense Matrix');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8826 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8827 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8828 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8829 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8830 var arows = a._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8831 var brows = b._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8832 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8833 var cvalues = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8834 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8835 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8837 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8838 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8839 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8840 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8841 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8842 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8843 // equalScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8844 var eq = equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8845 // zero value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8846 var zero = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8848 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8849 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8850 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8851 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8852 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8853 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8854 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8855 eq = typed.find(equalScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8856 // convert 0 to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8857 zero = typed.convert(0, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8858 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8859
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8860 // workspace
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8861 var x = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8862 // vector with marks indicating a value x[i] exists in a given column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8863 var w = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8865 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8866 cptr[0] = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8867 // rows in b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8868 for (var ib = 0; ib < brows; ib++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8869 // b[ib]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8870 var vbi = bdata[ib];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8871 // check b[ib] != 0, avoid loops
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8872 if (!eq(vbi, zero)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8873 // A values & index in ib column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8874 for (var ka0 = aptr[ib], ka1 = aptr[ib + 1], ka = ka0; ka < ka1; ka++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8875 // a row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8876 var ia = aindex[ka];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8877 // check value exists in current j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8878 if (!w[ia]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8879 // ia is new entry in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8880 w[ia] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8881 // add i to pattern of C
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8882 cindex.push(ia);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8883 // x(ia) = A
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8884 x[ia] = mf(vbi, avalues[ka]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8885 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8886 // i exists in C already
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8887 x[ia] = af(x[ia], mf(vbi, avalues[ka]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8888 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8889 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8890 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8891 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8892 // copy values from x to column jb of c
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8893 for (var p1 = cindex.length, p = 0; p < p1; p++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8894 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8895 var ic = cindex[p];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8896 // copy value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8897 cvalues[p] = x[ic];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8898 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8899 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8900 cptr[1] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8901
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8902 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8903 return new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8904 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8905 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8906 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8907 size: [arows, 1],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8908 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8909 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8910 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8912 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8913 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8914 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8915 * @param {Matrix} a SparseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8916 * @param {Matrix} b DenseMatrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8917 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8918 * @return {Matrix} SparseMatrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8919 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8920 var _multiplySparseMatrixDenseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8921 // a sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8922 var avalues = a._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8923 var aindex = a._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8924 var aptr = a._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8925 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8926 // validate a matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8927 if (!avalues) throw new Error('Cannot multiply Pattern only Matrix times Dense Matrix');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8928 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8929 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8930 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8931 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8932 var arows = a._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8933 var brows = b._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8934 var bcolumns = b._size[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8935
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8936 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8937 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8938 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8939 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8940 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8941 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8942 // equalScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8943 var eq = equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8944 // zero value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8945 var zero = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8946
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8947 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8948 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8949 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8950 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8951 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8952 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8953 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8954 eq = typed.find(equalScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8955 // convert 0 to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8956 zero = typed.convert(0, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8957 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8958
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8959 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8960 var cvalues = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8961 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8962 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8963 // c matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8964 var c = new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8965 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8966 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8967 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8968 size: [arows, bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8969 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8970 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8972 // workspace
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8973 var x = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8974 // vector with marks indicating a value x[i] exists in a given column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8975 var w = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8977 // loop b columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8978 for (var jb = 0; jb < bcolumns; jb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8979 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8980 cptr[jb] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8981 // mark in workspace for current column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8982 var mark = jb + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8983 // rows in jb
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8984 for (var ib = 0; ib < brows; ib++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8985 // b[ib, jb]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8986 var vbij = bdata[ib][jb];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8987 // check b[ib, jb] != 0, avoid loops
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8988 if (!eq(vbij, zero)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8989 // A values & index in ib column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8990 for (var ka0 = aptr[ib], ka1 = aptr[ib + 1], ka = ka0; ka < ka1; ka++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8991 // a row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8992 var ia = aindex[ka];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8993 // check value exists in current j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8994 if (w[ia] !== mark) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8995 // ia is new entry in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8996 w[ia] = mark;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8997 // add i to pattern of C
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8998 cindex.push(ia);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
8999 // x(ia) = A
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9000 x[ia] = mf(vbij, avalues[ka]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9001 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9002 // i exists in C already
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9003 x[ia] = af(x[ia], mf(vbij, avalues[ka]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9004 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9005 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9006 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9007 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9008 // copy values from x to column jb of c
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9009 for (var p0 = cptr[jb], p1 = cindex.length, p = p0; p < p1; p++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9010 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9011 var ic = cindex[p];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9012 // copy value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9013 cvalues[p] = x[ic];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9014 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9015 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9016 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9017 cptr[bcolumns] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9018
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9019 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9020 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9021 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9022
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9023 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9024 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9025 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9026 * @param {Matrix} a SparseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9027 * @param {Matrix} b SparseMatrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9028 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9029 * @return {Matrix} SparseMatrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9030 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9031 var _multiplySparseMatrixSparseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9032 // a sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9033 var avalues = a._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9034 var aindex = a._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9035 var aptr = a._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9036 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9037 // b sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9038 var bvalues = b._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9039 var bindex = b._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9040 var bptr = b._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9041 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9043 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9044 var arows = a._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9045 var bcolumns = b._size[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9046 // flag indicating both matrices (a & b) contain data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9047 var values = avalues && bvalues;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9049 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9050 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9051 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9052 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9053 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9054 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9055
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9056 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9057 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9058 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9059 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9060 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9061 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9062 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9063 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9065 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9066 var cvalues = values ? [] : undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9067 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9068 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9069 // c matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9070 var c = new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9071 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9072 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9073 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9074 size: [arows, bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9075 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9076 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9078 // workspace
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9079 var x = values ? [] : undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9080 // vector with marks indicating a value x[i] exists in a given column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9081 var w = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9082 // variables
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9083 var ka, ka0, ka1, kb, kb0, kb1, ia, ib;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9084 // loop b columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9085 for (var jb = 0; jb < bcolumns; jb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9086 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9087 cptr[jb] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9088 // mark in workspace for current column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9089 var mark = jb + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9090 // B values & index in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9091 for (kb0 = bptr[jb], kb1 = bptr[jb + 1], kb = kb0; kb < kb1; kb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9092 // b row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9093 ib = bindex[kb];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9094 // check we need to process values
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9095 if (values) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9096 // loop values in a[:,ib]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9097 for (ka0 = aptr[ib], ka1 = aptr[ib + 1], ka = ka0; ka < ka1; ka++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9098 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9099 ia = aindex[ka];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9100 // check value exists in current j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9101 if (w[ia] !== mark) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9102 // ia is new entry in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9103 w[ia] = mark;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9104 // add i to pattern of C
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9105 cindex.push(ia);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9106 // x(ia) = A
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9107 x[ia] = mf(bvalues[kb], avalues[ka]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9108 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9109 // i exists in C already
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9110 x[ia] = af(x[ia], mf(bvalues[kb], avalues[ka]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9111 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9112 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9113 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9114 // loop values in a[:,ib]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9115 for (ka0 = aptr[ib], ka1 = aptr[ib + 1], ka = ka0; ka < ka1; ka++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9116 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9117 ia = aindex[ka];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9118 // check value exists in current j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9119 if (w[ia] !== mark) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9120 // ia is new entry in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9121 w[ia] = mark;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9122 // add i to pattern of C
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9123 cindex.push(ia);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9124 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9125 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9126 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9127 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9128 // check we need to process matrix values (pattern matrix)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9129 if (values) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9130 // copy values from x to column jb of c
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9131 for (var p0 = cptr[jb], p1 = cindex.length, p = p0; p < p1; p++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9132 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9133 var ic = cindex[p];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9134 // copy value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9135 cvalues[p] = x[ic];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9136 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9137 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9138 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9139 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9140 cptr[bcolumns] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9142 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9143 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9144 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9146 multiply.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9147 2: '\\left(${args[0]}' + latex.operators['multiply'] + '${args[1]}\\right)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9148 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9150 return multiply;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9151 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9153 exports.name = 'multiply';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9154 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9156 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9157 /* 83 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9158 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9159
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9160 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9162 var number = __webpack_require__(72);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9163 var string = __webpack_require__(84);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9164 var object = __webpack_require__(69);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9165 var types = __webpack_require__(86);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9167 var DimensionError = __webpack_require__(87);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9168 var IndexError = __webpack_require__(88);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9170 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9171 * Calculate the size of a multi dimensional array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9172 * This function checks the size of the first entry, it does not validate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9173 * whether all dimensions match. (use function `validate` for that)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9174 * @param {Array} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9175 * @Return {Number[]} size
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9176 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9177 exports.size = function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9178 var s = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9180 while (Array.isArray(x)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9181 s.push(x.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9182 x = x[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9183 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9184
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9185 return s;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9186 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9188 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9189 * Recursively validate whether each element in a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9190 * has a size corresponding to the provided size array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9191 * @param {Array} array Array to be validated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9192 * @param {number[]} size Array with the size of each dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9193 * @param {number} dim Current dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9194 * @throws DimensionError
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9195 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9196 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9197 function _validate(array, size, dim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9198 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9199 var len = array.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9201 if (len != size[dim]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9202 throw new DimensionError(len, size[dim]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9203 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9204
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9205 if (dim < size.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9206 // recursively validate each child array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9207 var dimNext = dim + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9208 for (i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9209 var child = array[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9210 if (!Array.isArray(child)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9211 throw new DimensionError(size.length - 1, size.length, '<');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9212 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9213 _validate(array[i], size, dimNext);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9214 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9215 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9216 // last dimension. none of the childs may be an array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9217 for (i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9218 if (Array.isArray(array[i])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9219 throw new DimensionError(size.length + 1, size.length, '>');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9220 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9222 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9223 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9225 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9226 * Validate whether each element in a multi dimensional array has
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9227 * a size corresponding to the provided size array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9228 * @param {Array} array Array to be validated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9229 * @param {number[]} size Array with the size of each dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9230 * @throws DimensionError
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9231 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9232 exports.validate = function (array, size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9233 var isScalar = size.length == 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9234 if (isScalar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9235 // scalar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9236 if (Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9237 throw new DimensionError(array.length, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9238 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9239 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9240 // array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9241 _validate(array, size, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9242 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9243 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9244
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9245 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9246 * Test whether index is an integer number with index >= 0 and index < length
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9247 * when length is provided
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9248 * @param {number} index Zero-based index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9249 * @param {number} [length] Length of the array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9250 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9251 exports.validateIndex = function (index, length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9252 if (!number.isNumber(index) || !number.isInteger(index)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9253 throw new TypeError('Index must be an integer (value: ' + index + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9254 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9255 if (index < 0 || typeof length === 'number' && index >= length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9256 throw new IndexError(index, length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9257 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9258 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9259
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9260 // a constant used to specify an undefined defaultValue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9261 exports.UNINITIALIZED = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9263 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9264 * Resize a multi dimensional array. The resized array is returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9265 * @param {Array} array Array to be resized
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9266 * @param {Array.<number>} size Array with the size of each dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9267 * @param {*} [defaultValue=0] Value to be filled in in new entries,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9268 * zero by default. To leave new entries undefined,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9269 * specify array.UNINITIALIZED as defaultValue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9270 * @return {Array} array The resized array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9271 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9272 exports.resize = function (array, size, defaultValue) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9273 // TODO: add support for scalars, having size=[] ?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9275 // check the type of the arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9276 if (!Array.isArray(array) || !Array.isArray(size)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9277 throw new TypeError('Array expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9278 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9279 if (size.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9280 throw new Error('Resizing to scalar is not supported');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9281 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9282
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9283 // check whether size contains positive integers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9284 size.forEach(function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9285 if (!number.isNumber(value) || !number.isInteger(value) || value < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9286 throw new TypeError('Invalid size, must contain positive integers ' + '(size: ' + string.format(size) + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9287 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9288 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9289
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9290 // recursively resize the array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9291 var _defaultValue = defaultValue !== undefined ? defaultValue : 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9292 _resize(array, size, 0, _defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9293
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9294 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9295 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9296
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9297 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9298 * Recursively resize a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9299 * @param {Array} array Array to be resized
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9300 * @param {number[]} size Array with the size of each dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9301 * @param {number} dim Current dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9302 * @param {*} [defaultValue] Value to be filled in in new entries,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9303 * undefined by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9304 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9305 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9306 function _resize(array, size, dim, defaultValue) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9307 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9308 var elem;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9309 var oldLen = array.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9310 var newLen = size[dim];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9311 var minLen = Math.min(oldLen, newLen);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9312
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9313 // apply new length
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9314 array.length = newLen;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9315
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9316 if (dim < size.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9317 // non-last dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9318 var dimNext = dim + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9319
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9320 // resize existing child arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9321 for (i = 0; i < minLen; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9322 // resize child array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9323 elem = array[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9324 if (!Array.isArray(elem)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9325 elem = [elem]; // add a dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9326 array[i] = elem;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9327 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9328 _resize(elem, size, dimNext, defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9329 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9331 // create new child arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9332 for (i = minLen; i < newLen; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9333 // get child array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9334 elem = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9335 array[i] = elem;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9336
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9337 // resize new child array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9338 _resize(elem, size, dimNext, defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9339 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9340 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9341 // last dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9342
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9343 // remove dimensions of existing values
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9344 for (i = 0; i < minLen; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9345 while (Array.isArray(array[i])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9346 array[i] = array[i][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9348 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9350 if (defaultValue !== exports.UNINITIALIZED) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9351 // fill new elements with the default value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9352 for (i = minLen; i < newLen; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9353 array[i] = defaultValue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9354 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9355 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9356 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9357 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9359 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9360 * Squeeze a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9361 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9362 * @param {Array} [size]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9363 * @returns {Array} returns the array itself
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9364 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9365 exports.squeeze = function (array, size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9366 var s = size || exports.size(array);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9368 // squeeze outer dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9369 while (Array.isArray(array) && array.length === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9370 array = array[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9371 s.shift();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9372 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9374 // find the first dimension to be squeezed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9375 var dims = s.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9376 while (s[dims - 1] === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9377 dims--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9378 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9380 // squeeze inner dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9381 if (dims < s.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9382 array = _squeeze(array, dims, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9383 s.length = dims;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9384 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9385
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9386 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9387 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9389 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9390 * Recursively squeeze a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9391 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9392 * @param {number} dims Required number of dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9393 * @param {number} dim Current dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9394 * @returns {Array | *} Returns the squeezed array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9395 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9396 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9397 function _squeeze(array, dims, dim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9398 var i, ii;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9400 if (dim < dims) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9401 var next = dim + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9402 for (i = 0, ii = array.length; i < ii; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9403 array[i] = _squeeze(array[i], dims, next);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9404 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9405 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9406 while (Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9407 array = array[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9408 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9409 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9410
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9411 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9412 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9413
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9414 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9415 * Unsqueeze a multi dimensional array: add dimensions when missing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9416 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9417 * Paramter `size` will be mutated to match the new, unqueezed matrix size.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9418 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9419 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9420 * @param {number} dims Desired number of dimensions of the array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9421 * @param {number} [outer] Number of outer dimensions to be added
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9422 * @param {Array} [size] Current size of array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9423 * @returns {Array} returns the array itself
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9424 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9425 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9426 exports.unsqueeze = function (array, dims, outer, size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9427 var s = size || exports.size(array);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9428
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9429 // unsqueeze outer dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9430 if (outer) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9431 for (var i = 0; i < outer; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9432 array = [array];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9433 s.unshift(1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9434 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9435 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9436
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9437 // unsqueeze inner dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9438 array = _unsqueeze(array, dims, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9439 while (s.length < dims) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9440 s.push(1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9441 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9443 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9444 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9446 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9447 * Recursively unsqueeze a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9448 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9449 * @param {number} dims Required number of dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9450 * @param {number} dim Current dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9451 * @returns {Array | *} Returns the squeezed array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9452 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9453 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9454 function _unsqueeze(array, dims, dim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9455 var i, ii;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9456
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9457 if (Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9458 var next = dim + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9459 for (i = 0, ii = array.length; i < ii; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9460 array[i] = _unsqueeze(array[i], dims, next);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9461 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9462 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9463 for (var d = dim; d < dims; d++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9464 array = [array];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9465 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9466 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9468 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9469 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9470 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9471 * Flatten a multi dimensional array, put all elements in a one dimensional
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9472 * array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9473 * @param {Array} array A multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9474 * @return {Array} The flattened array (1 dimensional)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9475 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9476 exports.flatten = function (array) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9477 if (!Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9478 //if not an array, return as is
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9479 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9480 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9481 var flat = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9483 array.forEach(function callback(value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9484 if (Array.isArray(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9485 value.forEach(callback); //traverse through sub-arrays recursively
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9486 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9487 flat.push(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9488 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9489 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9490
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9491 return flat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9492 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9494 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9495 * Test whether an object is an array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9496 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9497 * @return {boolean} isArray
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9498 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9499 exports.isArray = Array.isArray;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9501 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9502 /* 84 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9503 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9505 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9507 var formatNumber = __webpack_require__(72).format;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9508 var formatBigNumber = __webpack_require__(85).format;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9509
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9510 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9511 * Test whether value is a string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9512 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9513 * @return {boolean} isString
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9514 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9515 exports.isString = function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9516 return typeof value === 'string';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9517 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9519 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9520 * Check if a text ends with a certain string.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9521 * @param {string} text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9522 * @param {string} search
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9523 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9524 exports.endsWith = function (text, search) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9525 var start = text.length - search.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9526 var end = text.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9527 return text.substring(start, end) === search;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9528 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9529
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9530 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9531 * Format a value of any type into a string.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9532 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9533 * Usage:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9534 * math.format(value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9535 * math.format(value, precision)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9536 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9537 * When value is a function:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9538 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9539 * - When the function has a property `syntax`, it returns this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9540 * syntax description.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9541 * - In other cases, a string `'function'` is returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9542 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9543 * When `value` is an Object:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9544 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9545 * - When the object contains a property `format` being a function, this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9546 * function is invoked as `value.format(options)` and the result is returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9547 * - When the object has its own `toString` method, this method is invoked
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9548 * and the result is returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9549 * - In other cases the function will loop over all object properties and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9550 * return JSON object notation like '{"a": 2, "b": 3}'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9551 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9552 * Example usage:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9553 * math.format(2/7); // '0.2857142857142857'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9554 * math.format(math.pi, 3); // '3.14'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9555 * math.format(new Complex(2, 3)); // '2 + 3i'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9556 * math.format('hello'); // '"hello"'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9557 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9558 * @param {*} value Value to be stringified
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9559 * @param {Object | number | Function} [options] Formatting options. See
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9560 * lib/utils/number:format for a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9561 * description of the available
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9562 * options.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9563 * @return {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9564 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9565 exports.format = function (value, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9566 if (typeof value === 'number') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9567 return formatNumber(value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9568 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9569
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9570 if (value && value.isBigNumber === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9571 return formatBigNumber(value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9572 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9573
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9574 if (value && value.isFraction === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9575 if (!options || options.fraction !== 'decimal') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9576 // output as ratio, like '1/3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9577 return value.s * value.n + '/' + value.d;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9578 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9579 // output as decimal, like '0.(3)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9580 return value.toString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9581 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9582 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9583
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9584 if (Array.isArray(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9585 return formatArray(value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9586 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9587
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9588 if (exports.isString(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9589 return '"' + value + '"';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9590 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9591
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9592 if (typeof value === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9593 return value.syntax ? String(value.syntax) : 'function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9594 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9595
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9596 if (value && typeof value === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9597 if (typeof value.format === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9598 return value.format(options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9599 } else if (value && value.toString() !== {}.toString()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9600 // this object has a non-native toString method, use that one
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9601 return value.toString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9602 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9603 var entries = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9605 for (var key in value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9606 if (value.hasOwnProperty(key)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9607 entries.push('"' + key + '": ' + exports.format(value[key], options));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9608 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9609 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9611 return '{' + entries.join(', ') + '}';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9612 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9613 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9615 return String(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9616 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9618 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9619 * Recursively format an n-dimensional matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9620 * Example output: "[[1, 2], [3, 4]]"
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9621 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9622 * @param {Object | number | Function} [options] Formatting options. See
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9623 * lib/utils/number:format for a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9624 * description of the available
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9625 * options.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9626 * @returns {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9627 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9628 function formatArray(array, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9629 if (Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9630 var str = '[';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9631 var len = array.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9632 for (var i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9633 if (i != 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9634 str += ', ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9635 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9636 str += formatArray(array[i], options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9637 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9638 str += ']';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9639 return str;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9640 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9641 return exports.format(array, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9642 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9643 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9644
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9645 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9646 /* 85 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9647 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9649 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9650 * Convert a BigNumber to a formatted string representation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9651 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9652 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9653 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9654 * format(value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9655 * format(value, options)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9656 * format(value, precision)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9657 * format(value, fn)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9658 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9659 * Where:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9660 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9661 * {number} value The value to be formatted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9662 * {Object} options An object with formatting options. Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9663 * {string} notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9664 * Number notation. Choose from:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9665 * 'fixed' Always use regular number notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9666 * For example '123.40' and '14000000'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9667 * 'exponential' Always use exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9668 * For example '1.234e+2' and '1.4e+7'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9669 * 'auto' (default) Regular number notation for numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9670 * having an absolute value between
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9671 * `lower` and `upper` bounds, and uses
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9672 * exponential notation elsewhere.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9673 * Lower bound is included, upper bound
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9674 * is excluded.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9675 * For example '123.4' and '1.4e7'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9676 * {number} precision A number between 0 and 16 to round
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9677 * the digits of the number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9678 * In case of notations 'exponential' and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9679 * 'auto', `precision` defines the total
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9680 * number of significant digits returned
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9681 * and is undefined by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9682 * In case of notation 'fixed',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9683 * `precision` defines the number of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9684 * significant digits after the decimal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9685 * point, and is 0 by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9686 * {Object} exponential An object containing two parameters,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9687 * {number} lower and {number} upper,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9688 * used by notation 'auto' to determine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9689 * when to return exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9690 * Default values are `lower=1e-3` and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9691 * `upper=1e5`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9692 * Only applicable for notation `auto`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9693 * {Function} fn A custom formatting function. Can be used to override the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9694 * built-in notations. Function `fn` is called with `value` as
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9695 * parameter and must return a string. Is useful for example to
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9696 * format all values inside a matrix in a particular way.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9697 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9698 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9699 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9700 * format(6.4); // '6.4'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9701 * format(1240000); // '1.24e6'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9702 * format(1/3); // '0.3333333333333333'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9703 * format(1/3, 3); // '0.333'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9704 * format(21385, 2); // '21000'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9705 * format(12.071, {notation: 'fixed'}); // '12'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9706 * format(2.3, {notation: 'fixed', precision: 2}); // '2.30'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9707 * format(52.8, {notation: 'exponential'}); // '5.28e+1'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9708 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9709 * @param {BigNumber} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9710 * @param {Object | Function | number} [options]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9711 * @return {string} str The formatted value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9712 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9713 exports.format = function (value, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9714 if (typeof options === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9715 // handle format(value, fn)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9716 return options(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9717 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9719 // handle special cases
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9720 if (!value.isFinite()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9721 return value.isNaN() ? 'NaN' : value.gt(0) ? 'Infinity' : '-Infinity';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9722 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9723
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9724 // default values for options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9725 var notation = 'auto';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9726 var precision = undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9727
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9728 if (options !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9729 // determine notation from options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9730 if (options.notation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9731 notation = options.notation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9732 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9734 // determine precision from options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9735 if (typeof options === 'number') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9736 precision = options;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9737 } else if (options.precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9738 precision = options.precision;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9739 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9740 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9742 // handle the various notations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9743 switch (notation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9744 case 'fixed':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9745 return exports.toFixed(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9746
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9747 case 'exponential':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9748 return exports.toExponential(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9749
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9750 case 'auto':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9751 // determine lower and upper bound for exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9752 // TODO: implement support for upper and lower to be BigNumbers themselves
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9753 var lower = 1e-3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9754 var upper = 1e5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9755 if (options && options.exponential) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9756 if (options.exponential.lower !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9757 lower = options.exponential.lower;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9758 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9759 if (options.exponential.upper !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9760 upper = options.exponential.upper;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9761 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9762 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9764 // adjust the configuration of the BigNumber constructor (yeah, this is quite tricky...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9765 var oldConfig = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9766 toExpNeg: value.constructor.toExpNeg,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9767 toExpPos: value.constructor.toExpPos
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9768 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9770 value.constructor.config({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9771 toExpNeg: Math.round(Math.log(lower) / Math.LN10),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9772 toExpPos: Math.round(Math.log(upper) / Math.LN10)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9773 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9775 // handle special case zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9776 if (value.isZero()) return '0';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9778 // determine whether or not to output exponential notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9779 var str;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9780 var abs = value.abs();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9781 if (abs.gte(lower) && abs.lt(upper)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9782 // normal number notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9783 str = value.toSignificantDigits(precision).toFixed();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9784 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9785 // exponential notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9786 str = exports.toExponential(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9787 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9789 // remove trailing zeros after the decimal point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9790 return str.replace(/((\.\d*?)(0+))($|e)/, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9791 var digits = arguments[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9792 var e = arguments[4];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9793 return digits !== '.' ? digits + e : e;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9794 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9795
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9796 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9797 throw new Error('Unknown notation "' + notation + '". ' + 'Choose "auto", "exponential", or "fixed".');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9798 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9799 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9801 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9802 * Format a number in exponential notation. Like '1.23e+5', '2.3e+0', '3.500e-3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9803 * @param {BigNumber} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9804 * @param {number} [precision] Number of digits in formatted output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9805 * If not provided, the maximum available digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9806 * is used.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9807 * @returns {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9808 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9809 exports.toExponential = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9810 if (precision !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9811 return value.toExponential(precision - 1); // Note the offset of one
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9812 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9813 return value.toExponential();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9814 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9815 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9817 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9818 * Format a number with fixed notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9819 * @param {BigNumber} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9820 * @param {number} [precision=0] Optional number of decimals after the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9821 * decimal point. Zero by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9822 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9823 exports.toFixed = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9824 return value.toFixed(precision || 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9825 // Note: the (precision || 0) is needed as the toFixed of BigNumber has an
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9826 // undefined default precision instead of 0.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9827 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9829 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9830 /* 86 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9831 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9833 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9835 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9836 * Determine the type of a variable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9837 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9838 * type(x)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9839 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9840 * The following types are recognized:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9841 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9842 * 'undefined'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9843 * 'null'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9844 * 'boolean'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9845 * 'number'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9846 * 'string'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9847 * 'Array'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9848 * 'Function'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9849 * 'Date'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9850 * 'RegExp'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9851 * 'Object'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9852 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9853 * @param {*} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9854 * @return {string} Returns the name of the type. Primitive types are lower case,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9855 * non-primitive types are upper-camel-case.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9856 * For example 'number', 'string', 'Array', 'Date'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9857 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9859 exports.type = function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9860 var type = typeof x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9861
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9862 if (type === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9863 if (x === null) return 'null';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9864 if (x instanceof Boolean) return 'boolean';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9865 if (x instanceof Number) return 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9866 if (x instanceof String) return 'string';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9867 if (Array.isArray(x)) return 'Array';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9868 if (x instanceof Date) return 'Date';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9869 if (x instanceof RegExp) return 'RegExp';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9871 return 'Object';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9872 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9874 if (type === 'function') return 'Function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9876 return type;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9877 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9879 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9880 * Test whether a value is a scalar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9881 * @param x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9882 * @return {boolean} Returns true when x is a scalar, returns false when
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9883 * x is a Matrix or Array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9884 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9885 exports.isScalar = function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9886 return !(x && x.isMatrix || Array.isArray(x));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9887 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9889 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9890 /* 87 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9891 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9893 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9895 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9896 * Create a range error with the message:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9897 * 'Dimension mismatch (<actual size> != <expected size>)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9898 * @param {number | number[]} actual The actual size
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9899 * @param {number | number[]} expected The expected size
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9900 * @param {string} [relation='!='] Optional relation between actual
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9901 * and expected size: '!=', '<', etc.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9902 * @extends RangeError
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9903 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9904
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9905 function DimensionError(actual, expected, relation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9906 if (!(this instanceof DimensionError)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9907 throw new SyntaxError('Constructor must be called with the new operator');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9908 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9910 this.actual = actual;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9911 this.expected = expected;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9912 this.relation = relation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9914 this.message = 'Dimension mismatch (' + (Array.isArray(actual) ? '[' + actual.join(', ') + ']' : actual) + ' ' + (this.relation || '!=') + ' ' + (Array.isArray(expected) ? '[' + expected.join(', ') + ']' : expected) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9915
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9916 this.stack = new Error().stack;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9917 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9919 DimensionError.prototype = new RangeError();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9920 DimensionError.prototype.constructor = RangeError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9921 DimensionError.prototype.name = 'DimensionError';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9922 DimensionError.prototype.isDimensionError = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9924 module.exports = DimensionError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9925
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9926 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9927 /* 88 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9928 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9929
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9930 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9932 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9933 * Create a range error with the message:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9934 * 'Index out of range (index < min)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9935 * 'Index out of range (index < max)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9936 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9937 * @param {number} index The actual index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9938 * @param {number} [min=0] Minimum index (included)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9939 * @param {number} [max] Maximum index (excluded)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9940 * @extends RangeError
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9941 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9942
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9943 function IndexError(index, min, max) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9944 if (!(this instanceof IndexError)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9945 throw new SyntaxError('Constructor must be called with the new operator');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9946 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9948 this.index = index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9949 if (arguments.length < 3) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9950 this.min = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9951 this.max = min;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9952 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9953 this.min = min;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9954 this.max = max;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9955 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9956
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9957 if (this.min !== undefined && this.index < this.min) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9958 this.message = 'Index out of range (' + this.index + ' < ' + this.min + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9959 } else if (this.max !== undefined && this.index >= this.max) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9960 this.message = 'Index out of range (' + this.index + ' > ' + (this.max - 1) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9961 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9962 this.message = 'Index out of range (' + this.index + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9963 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9965 this.stack = new Error().stack;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9966 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9968 IndexError.prototype = new RangeError();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9969 IndexError.prototype.constructor = RangeError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9970 IndexError.prototype.name = 'IndexError';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9971 IndexError.prototype.isIndexError = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9972
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9973 module.exports = IndexError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9975 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9976 /* 89 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9977 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9978
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9979 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9981 exports.symbols = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9982 // GREEK LETTERS
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9983 Alpha: 'A', alpha: '\\alpha',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9984 Beta: 'B', beta: '\\beta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9985 Gamma: '\\Gamma', gamma: '\\gamma',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9986 Delta: '\\Delta', delta: '\\delta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9987 Epsilon: 'E', epsilon: '\\epsilon', varepsilon: '\\varepsilon',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9988 Zeta: 'Z', zeta: '\\zeta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9989 Eta: 'H', eta: '\\eta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9990 Theta: '\\Theta', theta: '\\theta', vartheta: '\\vartheta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9991 Iota: 'I', iota: '\\iota',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9992 Kappa: 'K', kappa: '\\kappa', varkappa: '\\varkappa',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9993 Lambda: '\\Lambda', lambda: '\\lambda',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9994 Mu: 'M', mu: '\\mu',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9995 Nu: 'N', nu: '\\nu',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9996 Xi: '\\Xi', xi: '\\xi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9997 Omicron: 'O', omicron: 'o',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9998 Pi: '\\Pi', pi: '\\pi', varpi: '\\varpi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
9999 Rho: 'P', rho: '\\rho', varrho: '\\varrho',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10000 Sigma: '\\Sigma', sigma: '\\sigma', varsigma: '\\varsigma',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10001 Tau: 'T', tau: '\\tau',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10002 Upsilon: '\\Upsilon', upsilon: '\\upsilon',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10003 Phi: '\\Phi', phi: '\\phi', varphi: '\\varphi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10004 Chi: 'X', chi: '\\chi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10005 Psi: '\\Psi', psi: '\\psi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10006 Omega: '\\Omega', omega: '\\omega',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10007 //logic
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10008 'true': '\\mathrm{True}',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10009 'false': '\\mathrm{False}',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10010 //other
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10011 i: 'i', //TODO use \i ??
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10012 inf: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10013 Inf: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10014 infinity: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10015 Infinity: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10016 oo: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10017 lim: '\\lim',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10018 'undefined': '\\mathbf{?}'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10019 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10020
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10021 exports.operators = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10022 'transpose': '^\\top',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10023 'factorial': '!',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10024 'pow': '^',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10025 'dotPow': '.^\\wedge', //TODO find ideal solution
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10026 'unaryPlus': '+',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10027 'unaryMinus': '-',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10028 'bitNot': '~', //TODO find ideal solution
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10029 'not': '\\neg',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10030 'multiply': '\\cdot',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10031 'divide': '\\frac', //TODO how to handle that properly?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10032 'dotMultiply': '.\\cdot', //TODO find ideal solution
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10033 'dotDivide': '.:', //TODO find ideal solution
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10034 'mod': '\\mod',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10035 'add': '+',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10036 'subtract': '-',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10037 'to': '\\rightarrow',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10038 'leftShift': '<<',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10039 'rightArithShift': '>>',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10040 'rightLogShift': '>>>',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10041 'equal': '=',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10042 'unequal': '\\neq',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10043 'smaller': '<',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10044 'larger': '>',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10045 'smallerEq': '\\leq',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10046 'largerEq': '\\geq',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10047 'bitAnd': '\\&',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10048 'bitXor': '\\underline{|}',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10049 'bitOr': '|',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10050 'and': '\\wedge',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10051 'xor': '\\veebar',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10052 'or': '\\vee'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10053 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10054
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10055 exports.defaultTemplate = '\\mathrm{${name}}\\left(${args}\\right)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10056
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10057 var units = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10058 deg: '^\\circ'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10059 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10060
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10061 //@param {string} name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10062 //@param {boolean} isUnit
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10063 exports.toSymbol = function (name, isUnit) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10064 isUnit = typeof isUnit === 'undefined' ? false : isUnit;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10065 if (isUnit) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10066 if (units.hasOwnProperty(name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10067 return units[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10068 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10069 return '\\mathrm{' + name + '}';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10070 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10072 if (exports.symbols.hasOwnProperty(name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10073 return exports.symbols[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10074 } else if (name.indexOf('_') !== -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10075 //symbol with index (eg. alpha_1)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10076 var index = name.indexOf('_');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10077 return exports.toSymbol(name.substring(0, index)) + '_{' + exports.toSymbol(name.substring(index + 1)) + '}';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10078 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10079 return name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10080 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10081
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10082 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10083 /* 90 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10084 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10085
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10086 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10087
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10088 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10089 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10090 * Create a Matrix. The function creates a new `math.type.Matrix` object from
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10091 * an `Array`. A Matrix has utility functions to manipulate the data in the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10092 * matrix, like getting the size and getting or setting values in the matrix.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10093 * Supported storage formats are 'dense' and 'sparse'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10094 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10095 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10096 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10097 * math.matrix() // creates an empty matrix using default storage format (dense).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10098 * math.matrix(data) // creates a matrix with initial data using default storage format (dense).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10099 * math.matrix('dense') // creates an empty matrix using the given storage format.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10100 * math.matrix(data, 'dense') // creates a matrix with initial data using the given storage format.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10101 * math.matrix(data, 'sparse') // creates a sparse matrix with initial data.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10102 * math.matrix(data, 'sparse', 'number') // creates a sparse matrix with initial data, number data type.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10103 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10104 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10105 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10106 * var m = math.matrix([[1, 2], [3, 4]]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10107 * m.size(); // Array [2, 2]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10108 * m.resize([3, 2], 5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10109 * m.valueOf(); // Array [[1, 2], [3, 4], [5, 5]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10110 * m.get([1, 0]) // number 3
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10111 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10112 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10113 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10114 * bignumber, boolean, complex, index, number, string, unit, sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10115 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10116 * @param {Array | Matrix} [data] A multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10117 * @param {string} [format] The Matrix storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10118 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10119 * @return {Matrix} The created matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10120 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10121 var matrix = typed('matrix', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10122 '': function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10123 return _create([]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10124 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10125
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10126 'string': function (format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10127 return _create([], format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10128 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10130 'string, string': function (format, datatype) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10131 return _create([], format, datatype);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10132 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10134 'Array': function (data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10135 return _create(data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10136 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10137
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10138 'Matrix': function (data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10139 return _create(data, data.storage());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10140 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10142 'Array | Matrix, string': _create,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10144 'Array | Matrix, string, string': _create
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10145 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10147 matrix.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10148 0: '\\begin{bmatrix}\\end{bmatrix}',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10149 1: '\\left(${args[0]}\\right)',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10150 2: '\\left(${args[0]}\\right)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10151 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10153 return matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10155 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10156 * Create a new Matrix with given storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10157 * @param {Array} data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10158 * @param {string} [format]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10159 * @param {string} [datatype]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10160 * @returns {Matrix} Returns a new Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10161 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10162 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10163 function _create(data, format, datatype) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10164 // get storage format constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10165 var M = type.Matrix.storage(format || 'default');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10167 // create instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10168 return new M(data, datatype);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10169 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10170 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10172 exports.name = 'matrix';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10173 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10174
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10175 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10176 /* 91 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10177 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10179 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10180
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10181 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10182
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10183 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10184 * Add two scalar values, `x + y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10185 * This function is meant for internal use: it is used by the public function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10186 * `add`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10187 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10188 * This function does not support collections (Array or Matrix), and does
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10189 * not validate the number of of inputs.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10190 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10191 * @param {number | BigNumber | Fraction | Complex | Unit} x First value to add
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10192 * @param {number | BigNumber | Fraction | Complex} y Second value to add
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10193 * @return {number | BigNumber | Fraction | Complex | Unit} Sum of `x` and `y`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10194 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10195 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10196 var add = typed('add', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10198 'number, number': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10199 return x + y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10200 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10202 'Complex, Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10203 return x.add(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10204 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10206 'BigNumber, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10207 return x.plus(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10208 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10210 'Fraction, Fraction': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10211 return x.add(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10212 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10213
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10214 'Unit, Unit': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10215 if (x.value == null) throw new Error('Parameter x contains a unit with undefined value');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10216 if (y.value == null) throw new Error('Parameter y contains a unit with undefined value');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10217 if (!x.equalBase(y)) throw new Error('Units do not match');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10219 var res = x.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10220 res.value = add(res.value, y.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10221 res.fixPrefix = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10222 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10223 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10224 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10225
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10226 return add;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10227 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10229 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10231 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10232 /* 92 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10233 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10234
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10235 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10237 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10239 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10240 * Multiply two scalar values, `x * y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10241 * This function is meant for internal use: it is used by the public function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10242 * `multiply`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10243 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10244 * This function does not support collections (Array or Matrix), and does
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10245 * not validate the number of of inputs.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10246 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10247 * @param {number | BigNumber | Fraction | Complex | Unit} x First value to multiply
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10248 * @param {number | BigNumber | Fraction | Complex} y Second value to multiply
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10249 * @return {number | BigNumber | Fraction | Complex | Unit} Multiplication of `x` and `y`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10250 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10251 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10252 var multiplyScalar = typed('multiplyScalar', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10254 'number, number': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10255 return x * y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10256 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10258 'Complex, Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10259 return x.mul(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10260 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10261
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10262 'BigNumber, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10263 return x.times(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10264 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10266 'Fraction, Fraction': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10267 return x.mul(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10268 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10269
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10270 'number | Fraction | BigNumber | Complex, Unit': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10271 var res = y.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10272 res.value = res.value === null ? res._normalize(x) : multiplyScalar(res.value, x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10273 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10274 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10275
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10276 'Unit, number | Fraction | BigNumber | Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10277 var res = x.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10278 res.value = res.value === null ? res._normalize(y) : multiplyScalar(res.value, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10279 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10280 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10281
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10282 'Unit, Unit': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10283 return x.multiply(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10284 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10285
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10286 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10288 return multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10289 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10290
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10291 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10293 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10294 /* 93 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10295 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10296
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10297 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10299 var nearlyEqual = __webpack_require__(72).nearlyEqual;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10300 var bigNearlyEqual = __webpack_require__(94);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10302 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10303
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10304 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10305 * Test whether two values are equal.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10306 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10307 * @param {number | BigNumber | Fraction | boolean | Complex | Unit} x First value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10308 * @param {number | BigNumber | Fraction | boolean | Complex} y Second value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10309 * @return {boolean} Returns true when the compared values are equal, else returns false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10310 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10311 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10312 var equalScalar = typed('equalScalar', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10314 'boolean, boolean': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10315 return x === y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10316 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10317
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10318 'number, number': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10319 return x === y || nearlyEqual(x, y, config.epsilon);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10320 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10322 'BigNumber, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10323 return x.eq(y) || bigNearlyEqual(x, y, config.epsilon);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10324 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10325
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10326 'Fraction, Fraction': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10327 return x.equals(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10328 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10329
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10330 'Complex, Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10331 return x.equals(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10332 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10333
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10334 'Unit, Unit': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10335 if (!x.equalBase(y)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10336 throw new Error('Cannot compare units with different base');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10337 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10338 return equalScalar(x.value, y.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10339 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10341 'string, string': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10342 return x === y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10343 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10344 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10346 return equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10348
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10349 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10351 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10352 /* 94 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10353 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10355 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10357 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10358 * Compares two BigNumbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10359 * @param {BigNumber} x First value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10360 * @param {BigNumber} y Second value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10361 * @param {number} [epsilon] The maximum relative difference between x and y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10362 * If epsilon is undefined or null, the function will
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10363 * test whether x and y are exactly equal.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10364 * @return {boolean} whether the two numbers are nearly equal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10365 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10366
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10367 module.exports = function nearlyEqual(x, y, epsilon) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10368 // if epsilon is null or undefined, test whether x and y are exactly equal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10369 if (epsilon == null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10370 return x.eq(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10371 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10373 // use "==" operator, handles infinities
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10374 if (x.eq(y)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10375 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10377
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10378 // NaN
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10379 if (x.isNaN() || y.isNaN()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10380 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10381 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10383 // at this point x and y should be finite
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10384 if (x.isFinite() && y.isFinite()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10385 // check numbers are very close, needed when comparing numbers near zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10386 var diff = x.minus(y).abs();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10387 if (diff.isZero()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10388 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10389 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10390 // use relative error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10391 var max = x.constructor.max(x.abs(), y.abs());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10392 return diff.lte(max.times(epsilon));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10393 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10394 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10396 // Infinite and Number or negative Infinite and positive Infinite cases
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10397 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10398 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10400 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10401 /* 95 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10402 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10403
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10404 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10405
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10406 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10407
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10408 var equalScalar = load(__webpack_require__(93));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10409
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10410 var SparseMatrix = type.SparseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10412 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10413 * Iterates over SparseMatrix S nonzero items and invokes the callback function f(Sij, b).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10414 * Callback function invoked NZ times (number of nonzero items in S).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10415 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10416 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10417 * ┌ f(Sij, b) ; S(i,j) !== 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10418 * C(i,j) = ┤
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10419 * â”” 0 ; otherwise
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10420 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10421 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10422 * @param {Matrix} s The SparseMatrix instance (S)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10423 * @param {Scalar} b The Scalar value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10424 * @param {Function} callback The f(Aij,b) operation to invoke
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10425 * @param {boolean} inverse A true value indicates callback should be invoked f(b,Sij)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10426 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10427 * @return {Matrix} SparseMatrix (C)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10428 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10429 * https://github.com/josdejong/mathjs/pull/346#issuecomment-97626813
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10430 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10431 var algorithm11 = function (s, b, callback, inverse) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10432 // sparse matrix arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10433 var avalues = s._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10434 var aindex = s._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10435 var aptr = s._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10436 var asize = s._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10437 var adt = s._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10439 // sparse matrix cannot be a Pattern matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10440 if (!avalues) throw new Error('Cannot perform operation on Pattern Sparse Matrix and Scalar value');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10442 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10443 var rows = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10444 var columns = asize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10446 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10447 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10448 // equal signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10449 var eq = equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10450 // zero value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10451 var zero = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10452 // callback signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10453 var cf = callback;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10455 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10456 if (typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10457 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10458 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10459 // find signature that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10460 eq = typed.find(equalScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10461 // convert 0 to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10462 zero = typed.convert(0, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10463 // convert b to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10464 b = typed.convert(b, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10465 // callback
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10466 cf = typed.find(callback, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10467 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10469 // result arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10470 var cvalues = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10471 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10472 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10473 // matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10474 var c = new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10475 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10476 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10477 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10478 size: [rows, columns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10479 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10480 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10481
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10482 // loop columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10483 for (var j = 0; j < columns; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10484 // initialize ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10485 cptr[j] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10486 // values in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10487 for (var k0 = aptr[j], k1 = aptr[j + 1], k = k0; k < k1; k++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10488 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10489 var i = aindex[k];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10490 // invoke callback
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10491 var v = inverse ? cf(b, avalues[k]) : cf(avalues[k], b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10492 // check value is zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10493 if (!eq(v, zero)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10494 // push index & value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10495 cindex.push(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10496 cvalues.push(v);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10497 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10498 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10499 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10500 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10501 cptr[columns] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10502
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10503 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10504 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10505 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10507 return algorithm11;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10508 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10509
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10510 exports.name = 'algorithm11';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10511 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10513 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10514 /* 96 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10515 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10517 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10519 var clone = __webpack_require__(69).clone;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10521 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10523 var DenseMatrix = type.DenseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10525 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10526 * Iterates over DenseMatrix items and invokes the callback function f(Aij..z, b).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10527 * Callback function invoked MxN times.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10528 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10529 * C(i,j,...z) = f(Aij..z, b)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10530 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10531 * @param {Matrix} a The DenseMatrix instance (A)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10532 * @param {Scalar} b The Scalar value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10533 * @param {Function} callback The f(Aij..z,b) operation to invoke
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10534 * @param {boolean} inverse A true value indicates callback should be invoked f(b,Aij..z)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10535 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10536 * @return {Matrix} DenseMatrix (C)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10537 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10538 * https://github.com/josdejong/mathjs/pull/346#issuecomment-97659042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10539 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10540 var algorithm14 = function (a, b, callback, inverse) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10541 // a arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10542 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10543 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10544 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10546 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10547 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10548 // callback signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10549 var cf = callback;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10550
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10551 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10552 if (typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10553 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10554 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10555 // convert b to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10556 b = typed.convert(b, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10557 // callback
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10558 cf = typed.find(callback, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10559 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10560
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10561 // populate cdata, iterate through dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10562 var cdata = asize.length > 0 ? _iterate(cf, 0, asize, asize[0], adata, b, inverse) : [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10564 // c matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10565 return new DenseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10566 data: cdata,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10567 size: clone(asize),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10568 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10569 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10570 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10572 // recursive function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10573 var _iterate = function (f, level, s, n, av, bv, inverse) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10574 // initialize array for this level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10575 var cv = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10576 // check we reach the last level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10577 if (level === s.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10578 // loop arrays in last level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10579 for (var i = 0; i < n; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10580 // invoke callback and store value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10581 cv[i] = inverse ? f(bv, av[i]) : f(av[i], bv);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10582 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10583 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10584 // iterate current level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10585 for (var j = 0; j < n; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10586 // iterate next level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10587 cv[j] = _iterate(f, level + 1, s, s[level + 1], av[j], bv, inverse);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10589 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10590 return cv;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10591 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10593 return algorithm14;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10594 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10595
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10596 exports.name = 'algorithm14';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10597 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10598
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10599 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10600 /* 97 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10601 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10602
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10603 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10605 var isInteger = __webpack_require__(72).isInteger;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10606 var size = __webpack_require__(83).size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10607
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10608 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10609 var latex = __webpack_require__(89);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10610 var eye = load(__webpack_require__(98));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10611 var multiply = load(__webpack_require__(82));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10612 var matrix = load(__webpack_require__(90));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10613 var fraction = load(__webpack_require__(99));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10614 var number = load(__webpack_require__(100));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10616 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10617 * Calculates the power of x to y, `x ^ y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10618 * Matrix exponentiation is supported for square matrices `x`, and positive
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10619 * integer exponents `y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10620 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10621 * For cubic roots of negative numbers, the function returns the principal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10622 * root by default. In order to let the function return the real root,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10623 * math.js can be configured with `math.config({predictable: true})`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10624 * To retrieve all cubic roots of a value, use `math.cbrt(x, true)`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10625 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10626 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10627 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10628 * math.pow(x, y)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10629 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10630 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10631 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10632 * math.pow(2, 3); // returns number 8
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10633 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10634 * var a = math.complex(2, 3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10635 * math.pow(a, 2) // returns Complex -5 + 12i
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10636 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10637 * var b = [[1, 2], [4, 3]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10638 * math.pow(b, 2); // returns Array [[9, 8], [16, 17]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10639 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10640 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10641 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10642 * multiply, sqrt, cbrt, nthRoot
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10643 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10644 * @param {number | BigNumber | Complex | Array | Matrix} x The base
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10645 * @param {number | BigNumber | Complex} y The exponent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10646 * @return {number | BigNumber | Complex | Array | Matrix} The value of `x` to the power `y`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10647 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10648 var pow = typed('pow', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10649 'number, number': _pow,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10650
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10651 'Complex, Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10652 return x.pow(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10653 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10654
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10655 'BigNumber, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10656 if (y.isInteger() || x >= 0 || config.predictable) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10657 return x.pow(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10658 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10659 return new type.Complex(x.toNumber(), 0).pow(y.toNumber(), 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10660 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10661 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10663 'Fraction, Fraction': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10664 if (y.d !== 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10665 if (config.predictable) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10666 throw new Error('Function pow does not support non-integer exponents for fractions.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10667 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10668 return _pow(x.valueOf(), y.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10669 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10670 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10671 return x.pow(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10672 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10673 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10675 'Array, number': _powArray,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10676
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10677 'Array, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10678 return _powArray(x, y.toNumber());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10679 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10681 'Matrix, number': _powMatrix,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10683 'Matrix, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10684 return _powMatrix(x, y.toNumber());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10685 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10686
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10687 'Unit, number': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10688 return x.pow(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10689 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10691 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10693 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10694 * Calculates the power of x to y, x^y, for two numbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10695 * @param {number} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10696 * @param {number} y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10697 * @return {number | Complex} res
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10698 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10699 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10700 function _pow(x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10701
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10702 // Alternatively could define a 'realmode' config option or something, but
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10703 // 'predictable' will work for now
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10704 if (config.predictable && !isInteger(y) && x < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10705 // Check to see if y can be represented as a fraction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10706 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10707 var yFrac = fraction(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10708 var yNum = number(yFrac);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10709 if (y === yNum || Math.abs((y - yNum) / y) < 1e-14) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10710 if (yFrac.d % 2 === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10711 return (yFrac.n % 2 === 0 ? 1 : -1) * Math.pow(-x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10713 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10714 } catch (ex) {}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10715 // fraction() throws an error if y is Infinity, etc.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10716
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10718 // Unable to express y as a fraction, so continue on
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10719 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10720
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10721 if (isInteger(y) || x >= 0 || config.predictable) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10722 return Math.pow(x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10723 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10724 return new type.Complex(x, 0).pow(y, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10725 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10726 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10727
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10728 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10729 * Calculate the power of a 2d array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10730 * @param {Array} x must be a 2 dimensional, square matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10731 * @param {number} y a positive, integer value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10732 * @returns {Array}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10733 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10734 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10735 function _powArray(x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10736 if (!isInteger(y) || y < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10737 throw new TypeError('For A^b, b must be a positive integer (value is ' + y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10738 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10739 // verify that A is a 2 dimensional square matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10740 var s = size(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10741 if (s.length != 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10742 throw new Error('For A^b, A must be 2 dimensional (A has ' + s.length + ' dimensions)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10743 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10744 if (s[0] != s[1]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10745 throw new Error('For A^b, A must be square (size is ' + s[0] + 'x' + s[1] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10746 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10747
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10748 var res = eye(s[0]).valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10749 var px = x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10750 while (y >= 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10751 if ((y & 1) == 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10752 res = multiply(px, res);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10753 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10754 y >>= 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10755 px = multiply(px, px);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10756 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10757 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10758 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10760 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10761 * Calculate the power of a 2d matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10762 * @param {Matrix} x must be a 2 dimensional, square matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10763 * @param {number} y a positive, integer value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10764 * @returns {Matrix}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10765 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10766 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10767 function _powMatrix(x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10768 return matrix(_powArray(x.valueOf(), y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10769 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10770
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10771 pow.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10772 2: '\\left(${args[0]}\\right)' + latex.operators['pow'] + '{${args[1]}}'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10773 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10775 return pow;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10776 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10778 exports.name = 'pow';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10779 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10780
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10781 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10782 /* 98 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10783 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10785 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10786
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10787 var array = __webpack_require__(83);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10788 var isInteger = __webpack_require__(72).isInteger;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10790 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10792 var matrix = load(__webpack_require__(90));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10794 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10795 * Create a 2-dimensional identity matrix with size m x n or n x n.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10796 * The matrix has ones on the diagonal and zeros elsewhere.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10797 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10798 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10799 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10800 * math.eye(n)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10801 * math.eye(n, format)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10802 * math.eye(m, n)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10803 * math.eye(m, n, format)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10804 * math.eye([m, n])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10805 * math.eye([m, n], format)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10806 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10807 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10808 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10809 * math.eye(3); // returns [[1, 0, 0], [0, 1, 0], [0, 0, 1]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10810 * math.eye(3, 2); // returns [[1, 0], [0, 1], [0, 0]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10811 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10812 * var A = [[1, 2, 3], [4, 5, 6]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10813 * math.eye(math.size(A)); // returns [[1, 0, 0], [0, 1, 0]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10814 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10815 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10816 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10817 * diag, ones, zeros, size, range
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10818 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10819 * @param {...number | Matrix | Array} size The size for the matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10820 * @param {string} [format] The Matrix storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10821 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10822 * @return {Matrix | Array | number} A matrix with ones on the diagonal.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10823 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10824 var eye = typed('eye', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10825 '': function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10826 return config.matrix === 'Matrix' ? matrix([]) : [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10827 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10829 'string': function (format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10830 return matrix(format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10831 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10833 'number | BigNumber': function (rows) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10834 return _eye(rows, rows, config.matrix === 'Matrix' ? 'default' : undefined);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10835 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10837 'number | BigNumber, string': function (rows, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10838 return _eye(rows, rows, format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10839 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10841 'number | BigNumber, number | BigNumber': function (rows, cols) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10842 return _eye(rows, cols, config.matrix === 'Matrix' ? 'default' : undefined);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10843 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10845 'number | BigNumber, number | BigNumber, string': function (rows, cols, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10846 return _eye(rows, cols, format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10847 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10849 'Array': function (size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10850 return _eyeVector(size);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10851 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10853 'Array, string': function (size, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10854 return _eyeVector(size, format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10855 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10856
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10857 'Matrix': function (size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10858 return _eyeVector(size.valueOf(), size.storage());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10859 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10860
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10861 'Matrix, string': function (size, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10862 return _eyeVector(size.valueOf(), format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10864 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10865
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10866 eye.toTex = undefined; // use default template
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10867
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10868 return eye;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10869
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10870 function _eyeVector(size, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10871 switch (size.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10872 case 0:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10873 return format ? matrix(format) : [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10874 case 1:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10875 return _eye(size[0], size[0], format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10876 case 2:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10877 return _eye(size[0], size[1], format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10878 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10879 throw new Error('Vector containing two values expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10880 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10881 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10883 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10884 * Create an identity matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10885 * @param {number | BigNumber} rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10886 * @param {number | BigNumber} cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10887 * @param {string} [format]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10888 * @returns {Matrix}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10889 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10890 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10891 function _eye(rows, cols, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10892 // BigNumber constructor with the right precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10893 var Big = rows && rows.isBigNumber === true ? type.BigNumber : cols && cols.isBigNumber === true ? type.BigNumber : null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10895 if (rows && rows.isBigNumber === true) rows = rows.toNumber();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10896 if (cols && cols.isBigNumber === true) cols = cols.toNumber();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10897
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10898 if (!isInteger(rows) || rows < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10899 throw new Error('Parameters in function eye must be positive integers');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10900 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10901 if (!isInteger(cols) || cols < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10902 throw new Error('Parameters in function eye must be positive integers');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10903 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10904
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10905 var one = Big ? new type.BigNumber(1) : 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10906 var defaultValue = Big ? new Big(0) : 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10907 var size = [rows, cols];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10909 // check we need to return a matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10910 if (format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10911 // get matrix storage constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10912 var F = type.Matrix.storage(format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10913 // create diagonal matrix (use optimized implementation for storage format)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10914 return F.diagonal(size, one, 0, defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10915 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10916
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10917 // create and resize array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10918 var res = array.resize([], size, defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10919 // fill in ones on the diagonal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10920 var minimum = rows < cols ? rows : cols;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10921 // fill diagonal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10922 for (var d = 0; d < minimum; d++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10923 res[d][d] = one;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10924 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10925 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10926 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10927 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10929 exports.name = 'eye';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10930 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10932 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10933 /* 99 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10934 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10935
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10936 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10938 var deepMap = __webpack_require__(80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10939
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10940 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10941 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10942 * Create a fraction convert a value to a fraction.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10943 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10944 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10945 * math.fraction(numerator, denominator)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10946 * math.fraction({n: numerator, d: denominator})
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10947 * math.fraction(matrix: Array | Matrix) Turn all matrix entries
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10948 * into fractions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10949 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10950 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10951 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10952 * math.fraction(1, 3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10953 * math.fraction('2/3');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10954 * math.fraction({n: 2, d: 3});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10955 * math.fraction([0.2, 0.25, 1.25]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10956 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10957 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10958 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10959 * bignumber, number, string, unit
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10960 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10961 * @param {number | string | Fraction | BigNumber | Array | Matrix} [args]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10962 * Arguments specifying the numerator and denominator of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10963 * the fraction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10964 * @return {Fraction | Array | Matrix} Returns a fraction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10965 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10966 var fraction = typed('fraction', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10967 'number': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10968 if (!isFinite(x) || isNaN(x)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10969 throw new Error(x + ' cannot be represented as a fraction');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10970 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10972 return new type.Fraction(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10973 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10975 'string': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10976 return new type.Fraction(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10977 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10978
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10979 'number, number': function (numerator, denominator) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10980 return new type.Fraction(numerator, denominator);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10981 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10983 'BigNumber': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10984 return new type.Fraction(x.toString());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10985 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10986
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10987 'Fraction': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10988 return x; // fractions are immutable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10989 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10990
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10991 'Object': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10992 return new type.Fraction(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10993 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10994
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10995 'Array | Matrix': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10996 return deepMap(x, fraction);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10997 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10998 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
10999
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11000 return fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11001 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11002
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11003 exports.name = 'fraction';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11004 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11006 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11007 /* 100 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11008 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11010 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11011
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11012 var deepMap = __webpack_require__(80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11014 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11015 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11016 * Create a number or convert a string, boolean, or unit to a number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11017 * When value is a matrix, all elements will be converted to number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11018 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11019 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11020 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11021 * math.number(value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11022 * math.number(unit, valuelessUnit)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11023 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11024 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11025 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11026 * math.number(2); // returns number 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11027 * math.number('7.2'); // returns number 7.2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11028 * math.number(true); // returns number 1
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11029 * math.number([true, false, true, true]); // returns [1, 0, 1, 1]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11030 * math.number(math.unit('52cm'), 'm'); // returns 0.52
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11031 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11032 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11033 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11034 * bignumber, boolean, complex, index, matrix, string, unit
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11035 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11036 * @param {string | number | BigNumber | Fraction | boolean | Array | Matrix | Unit | null} [value] Value to be converted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11037 * @param {Unit | string} [valuelessUnit] A valueless unit, used to convert a unit to a number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11038 * @return {number | Array | Matrix} The created number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11039 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11040 var number = typed('number', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11041 '': function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11042 return 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11043 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11045 'number': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11046 return x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11047 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11049 'string': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11050 var num = Number(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11051 if (isNaN(num)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11052 throw new SyntaxError('String "' + x + '" is no valid number');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11053 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11054 return num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11055 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11056
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11057 'BigNumber': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11058 return x.toNumber();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11059 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11060
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11061 'Fraction': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11062 return x.valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11063 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11065 'Unit': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11066 throw new Error('Second argument with valueless unit expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11067 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11069 'Unit, string | Unit': function (unit, valuelessUnit) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11070 return unit.toNumber(valuelessUnit);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11071 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11072
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11073 'Array | Matrix': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11074 return deepMap(x, number);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11075 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11076 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11078 number.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11079 0: '0',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11080 1: '\\left(${args[0]}\\right)',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11081 2: '\\left(\\left(${args[0]}\\right)${args[1]}\\right)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11082 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11084 return number;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11085 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11086
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11087 exports.name = 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11088 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11089
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11090 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11091 /* 101 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11092 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11093
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11094 module.exports = function get_previous_zoom(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11095 var prev_zoom = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11097 var inst_trans = d3.select(params.root + ' .clust_group').attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11099 if (inst_trans != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11100
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11101 // prevent from crashing if no scaling was done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11102 if (inst_trans.indexOf('scale') > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11103 prev_zoom.zoom_x = parseFloat(inst_trans.split('scale')[1].replace('(', '').replace(')', '').split(',')[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11104
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11105 prev_zoom.zoom_y = parseFloat(inst_trans.split('scale')[1].replace('(', '').replace(')', '').split(',')[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11106 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11107 prev_zoom.zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11108 prev_zoom.zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11109 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11110 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11111 prev_zoom.zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11112 prev_zoom.zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11113 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11115 return prev_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11116 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11118 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11119 /* 102 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11120 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11121
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11122 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11124 module.exports = function make_row_tooltips(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11125
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11126 if (params.labels.show_label_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11128 // remove old tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11129 d3.selectAll(params.viz.root_tips + '_row_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11131 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11132
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11133 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11134 var row_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11135 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_row_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11136 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11137 }).direction('e').offset([0, 10]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11138 var inst_name = d.name.replace(/_/g, ' ').split('#')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11139 return "<span>" + inst_name + "</span>";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11140 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11142 d3.select(params.viz.viz_wrapper).select(params.root + ' .row_container').call(row_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11144 d3.select(params.root + ' .row_label_zoom_container').selectAll('g').on('mouseover', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11146 d3.select(params.viz.root_tips + '_row_tip').classed(d.name, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11148 d3.selectAll(params.viz.root_tips + '_row_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11150 d3.select(this).select('text').classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11152 row_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11154 if (params.row_tip_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11155 params.row_tip_callback(params.viz.root_tips, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11156 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11157 }).on('mouseout', function mouseout(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11159 d3.selectAll(params.viz.root_tips + '_row_tip').style('display', 'none').classed(d.name, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11161 d3.select(this).select('text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11163 row_tip.hide(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11164 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11165 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11167 d3.select(params.root + ' .row_label_zoom_container').selectAll('g').on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11168 d3.select(this).select('text').classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11169 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11170 d3.select(this).select('text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11171 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11172 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11173 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11174
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11175 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11176 /* 103 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11177 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11179 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11180 var add_col_click_hlight = __webpack_require__(104);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11181 var col_reorder = __webpack_require__(105);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11182 var row_reorder = __webpack_require__(52);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11183 var make_col_tooltips = __webpack_require__(109);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11184 var col_viz_aid_triangle = __webpack_require__(110);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11185
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11186 module.exports = function make_col_label_container(cgm, text_delay = 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11188 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11189 var col_container;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11191 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11192
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11193 // offset click group column label
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11194 var x_offset_click = params.viz.x_scale.rangeBand() / 2 + params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11195 // reduce width of rotated rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11198 // make container to pre-position zoomable elements
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11199 if (d3.select(params.root + ' .col_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11201 col_container = d3.select(params.viz.viz_svg).append('g').attr('class', 'col_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.norm_labels.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11202
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11203 // white background rect for col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11204 col_container.append('rect').attr('fill', params.viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11205 .attr('width', 30 * params.viz.clust.dim.width + 'px').attr('height', params.viz.label_background.col).attr('class', 'white_bars');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11206
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11207 // col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11208 col_container.append('g').attr('class', 'col_label_outer_container')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11209 // position the outer col label group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11210 .attr('transform', 'translate(0,' + params.viz.norm_labels.width.col + ')').append('g').attr('class', 'col_zoom_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11211 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11213 col_container = d3.select(params.root + ' .col_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.norm_labels.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11214
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11215 // white background rect for col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11216 col_container.select('.white_bars').attr('fill', params.viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11217 .attr('width', 30 * params.viz.clust.dim.width + 'px').attr('height', params.viz.label_background.col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11219 // col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11220 col_container.select(params.root + ' .col_label_outer_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11223 // add main column label group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11224 var col_label_obj = d3.select(params.root + ' .col_zoom_container').selectAll('.col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11225 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11226 }).enter().append('g').attr('class', 'col_label_text').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11227 var inst_index = d.col_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11228 return 'translate(' + params.viz.x_scale(inst_index) + ', 0) rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11229 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11231 // append group for individual column label
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11232 var col_label_group = col_label_obj
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11233 // append new group for rect and label (not white lines)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11234 .append('g').attr('class', 'col_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11235 // rotate column labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11236 .attr('transform', 'translate(' + params.viz.x_scale.rangeBand() / 2 + ',' + x_offset_click + ') rotate(45)').on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11237 d3.select(this).select('text').classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11238 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11239 d3.select(this).select('text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11240 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11241
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11242 // append column value bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11243 if (utils.has(params.network_data.col_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11244
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11245 col_label_group.append('rect').attr('class', 'col_bars').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11246 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11247 if (d.value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11248 inst_value = params.labels.bar_scale_col(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11249 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11250 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11251 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11252 // rotate labels - reduce width if rotating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11253 .attr('height', params.viz.x_scale.rangeBand() * 0.66).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11254 return d.value > 0 ? params.matrix.bar_colors[0] : params.matrix.bar_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11255 }).attr('opacity', 0.6);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11256 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11258 // add column label
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11259 col_label_group.append('text').attr('x', 0)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11260 // manually tuned
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11261 .attr('y', params.viz.x_scale.rangeBand() * 0.64).attr('dx', params.viz.border_width.x).attr('text-anchor', 'start').attr('full_name', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11262 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11263 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11264 // original font size
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11265 .style('font-size', params.labels.default_fs_col + 'px').style('cursor', 'default').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11266 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11267 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11268 // .attr('pointer-events','none')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11269 .style('opacity', 0).transition().delay(text_delay).duration(text_delay).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11271 make_col_tooltips(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11273 // add triangle under rotated labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11274 col_label_group.append('path').style('stroke-width', 0).attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11275 return col_viz_aid_triangle(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11276 }).attr('fill', '#eee').style('opacity', 0).transition().delay(text_delay).duration(text_delay).style('opacity', params.viz.triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11277
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11278 // add col callback function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11279 d3.selectAll(params.root + ' .col_label_text').on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11281 if (typeof params.click_label == 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11282 params.click_label(d.name, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11283 add_col_click_hlight(params, this, d.ini);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11284 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11285
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11286 if (params.tile_click_hlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11287 add_col_click_hlight(params, this, d.ini);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11288 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11289 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11290 }).on('dblclick', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11292 var data_attr = '__data__';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11293 var col_name = this[data_attr].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11294
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11295 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11296 col_reorder(cgm, this, col_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11298 var row_selection = d3.selectAll(params.root + ' .row_label_group').filter(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11299 return d.name == col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11300 })[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11302 row_reorder(cgm, row_selection, col_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11303 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11304 col_reorder(cgm, this, col_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11305 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11306
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11307 if (params.tile_click_hlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11308 add_col_click_hlight(params, this, d.ini);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11309 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11310 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11311 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11312
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11313 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11314 /* 104 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11315 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11317 module.exports = function (params, clicked_col, id_clicked_col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11319 if (id_clicked_col != params.click_hlight_col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11320
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11321 params.click_hlight_col = id_clicked_col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11323 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11324 var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11325 var hlight_width = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11326
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11327 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11329 // // highlight selected column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11330 // ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11331 // // unhilight and unbold all columns (already unbolded earlier)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11332 // d3.selectAll('.col_label_text')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11333 // .select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11334 // .style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11335 // // highlight column name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11336 // d3.select(clicked_col)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11337 // .select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11338 // .style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11339
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11340 d3.select(clicked_col).append('rect').classed('click_hlight', true).classed('col_top_hlight', true).attr('width', params.viz.clust.dim.height).attr('height', hlight_width).attr('fill', params.matrix.hlight_color).attr('opacity', opacity_hlight).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11341 var tmp_translate_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11342 var tmp_translate_x = -(params.viz.clust.dim.height + params.viz.cat_room.col + params.viz.uni_margin);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11343 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11344 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11346 d3.select(clicked_col).append('rect').classed('click_hlight', true).classed('col_bottom_hlight', true).attr('width', params.viz.clust.dim.height).attr('height', hlight_width).attr('fill', params.matrix.hlight_color).attr('opacity', opacity_hlight).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11347 // reverse x and y since rotated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11348 var tmp_translate_y = params.viz.x_scale.rangeBand() - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11349 var tmp_translate_x = -(params.viz.clust.dim.height + params.viz.cat_room.col + params.viz.uni_margin);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11350 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11351 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11352 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11353 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11354 params.click_hlight_col = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11355 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11356 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11357
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11358 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11359 /* 105 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11360 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11362 // var utils = require('../Utils_clust');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11363 var reposition_tile_highlight = __webpack_require__(53);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11364 var toggle_dendro_view = __webpack_require__(54);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11365 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11366 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11367 var get_previous_zoom = __webpack_require__(101);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11368 var calc_downsampled_levels = __webpack_require__(27);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11370 module.exports = function col_reorder(cgm, col_selection, inst_term) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11371
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11372 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11373 var prev_zoom = get_previous_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11375 if (prev_zoom.zoom_y === 1 && prev_zoom.zoom_x === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11376
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11377 params.viz.inst_order.col = 'custom';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11379 toggle_dendro_view(cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11380
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11381 d3.selectAll(params.root + ' .toggle_row_order .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11383 params.viz.run_trans = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11385 var mat = $.extend(true, {}, params.matrix.matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11386 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11387 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11389 // find the column number of col_selection term from col_nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11390 // gather column node names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11391 var tmp_arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11392 col_nodes.forEach(function (node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11393 tmp_arr.push(node.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11394 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11396 // find index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11397 var inst_col = _.indexOf(tmp_arr, inst_term);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11398
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11399 // gather the values of the input genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11400 tmp_arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11401 row_nodes.forEach(function (node, index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11402 tmp_arr.push(mat[index].row_data[inst_col].value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11403 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11405 // sort the cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11406 var tmp_sort = d3.range(tmp_arr.length).sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11407 return tmp_arr[b] - tmp_arr[a];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11408 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11409
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11410 // resort rows (rows are reorderd by double clicking a col)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11411 params.viz.y_scale.domain(tmp_sort);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11412
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11413 // save to custom row order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11414 params.matrix.orders.custom_col = tmp_sort;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11416 var t;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11418 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11419
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11420 // reorder
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11421 if (params.network_data.links.length > params.matrix.def_large_matrix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11422 t = d3.select(params.root + ' .viz_svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11423 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11424 t = d3.select(params.root + ' .viz_svg').transition().duration(2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11425 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11427 // reorder row_label_triangle groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11428 t.selectAll('.row_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11429 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11430 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11431 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11432
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11433 // Move Row Labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11434 t.select('.row_label_zoom_container').selectAll('.row_label_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11435 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11436 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11437 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11439 // only update matri if not downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11440 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11441 // reorder matrix rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11442 t.selectAll('.row').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11443 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11444 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11445 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11446 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11448 // highlight selected column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11449 ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11450 // unhilight and unbold all columns (already unbolded earlier)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11451 d3.selectAll(params.root + ' .col_label_text').select('.highlight_rect').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11452 // highlight column name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11453 d3.select(col_selection).select('.highlight_rect').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11455 // redefine x and y positions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11456 params.network_data.links.forEach(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11457 d.x = params.viz.x_scale(d.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11458 d.y = params.viz.y_scale(d.source);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11459 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11461 reposition_tile_highlight(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11463 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11465 setTimeout(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11466 params.viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11467 }, 2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11469 // calculate downsmapling if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11470 if (params.viz.ds_num_levels > 0 && params.viz.ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11471
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11472 calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11473
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11474 var zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11475 var zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11476 var make_all_rows = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11477 // show_visible_area is also run with two_translate_zoom, but at that point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11478 // the parameters were not updated and two_translate_zoom if only run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11479 // if needed to reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11480 show_visible_area(cgm, zooming_stopped, zooming_out, make_all_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11481 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11482 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11483 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11484
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11485 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11486 /* 106 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11487 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11489 var find_viz_rows = __webpack_require__(107);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11490 var make_matrix_rows = __webpack_require__(41);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11491 var make_row_labels = __webpack_require__(50);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11492 var make_row_visual_aid_triangles = __webpack_require__(108);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11494 module.exports = function show_visible_area(cgm, zooming_stopped = false, zooming_out = false, make_all_rows = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11495
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11496 // console.log('show_visible_area stopped: ' + String(zooming_stopped));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11497
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11498 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11499 var zoom_info = params.zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11501 // update ds_level if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11502 //////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11503 var check_ds_level = params.viz.ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11504 var old_ds_level = params.viz.ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11505
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11506 // toggle the downsampling level (if necessary)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11507 if (params.viz.ds === null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11508 check_ds_level = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11509 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11511 check_ds_level = Math.floor(Math.log(zoom_info.zoom_y) / Math.log(params.viz.ds_zt));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11513 if (check_ds_level > params.viz.ds_num_levels - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11514 check_ds_level = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11515 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11516 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11517
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11518 // check if override_ds is necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11519 //////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11520 // force update of view if moving to more coarse view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11521 var override_ds = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11523 if (old_ds_level == -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11524 // transitioning to more coarse downsampling view (from real data)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11525 if (check_ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11526 override_ds = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11527 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11528 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11529 // transitioning to more coarse downsampling view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11530 if (check_ds_level < old_ds_level) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11531 override_ds = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11532 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11533 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11534
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11535 // update level if zooming has stopped or if transitioning to more coarse view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11536 var new_ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11538 if (zooming_stopped === true || override_ds === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11540 // update new_ds_level if necessary (if decreasing detail, zooming out)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11541 new_ds_level = check_ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11542
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11543 // set zooming_stopped to true in case of override_ds
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11544 zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11546 params.viz.ds_level = new_ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11547 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11548 // keep the old level (zooming is still occuring and not zooming out)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11549 new_ds_level = old_ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11550 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11552 var viz_area = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11553 var buffer_size = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11554 // get translation vector absolute values
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11555 viz_area.min_x = Math.abs(zoom_info.trans_x) / zoom_info.zoom_x - (buffer_size + 1) * params.viz.rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11556 viz_area.min_y = Math.abs(zoom_info.trans_y) / zoom_info.zoom_y - (buffer_size + 1) * params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11557
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11558 viz_area.max_x = Math.abs(zoom_info.trans_x) / zoom_info.zoom_x + params.viz.clust.dim.width / zoom_info.zoom_x + buffer_size * params.viz.rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11559
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11560 viz_area.max_y = Math.abs(zoom_info.trans_y) / zoom_info.zoom_y + params.viz.clust.dim.height / zoom_info.zoom_y + buffer_size * params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11562 // generate lists of visible rows/cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11563 find_viz_rows(params, viz_area);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11564
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11565 var missing_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11566 if (make_all_rows === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11567 missing_rows = _.difference(params.viz.viz_nodes.row, params.viz.viz_nodes.curr_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11568 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11569 // make all rows (reordering)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11570 missing_rows = 'all';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11572 // remove downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11573 d3.selectAll(params.root + ' .ds' + String(new_ds_level) + '_row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11574 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11575
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11576 if (params.viz.ds != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11577 var ds_row_class = '.ds' + String(params.viz.ds_level) + '_row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11578 d3.selectAll(ds_row_class).style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11579 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11581 // if downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11582 if (new_ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11583 // remove old rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11584 d3.selectAll(params.root + ' .row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11585 // remove tile tooltips and row tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11586 d3.selectAll(params.viz.root_tips + '_tile_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11587 d3.selectAll(params.viz.root_tips + '_row_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11589
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11590 // default state for downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11591 var inst_matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11593 if (new_ds_level < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11594 // set matrix to default matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11595 inst_matrix = params.matrix.matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11596
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11597 // make row visual-aid triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11598 make_row_visual_aid_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11599 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11600 // set matrix to downsampled matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11601 inst_matrix = params.matrix.ds_matrix[new_ds_level];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11602
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11603 d3.selectAll(params.root + ' .row_cat_group path').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11604 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11606 // also remove row visual aid triangles if zooming out
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11607 if (zooming_out === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11608 d3.selectAll(params.root + ' .row_cat_group path').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11609 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11611 // remove rows and labels that are not visible and change ds_level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11612 /* run when zooming has stopped */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11613 if (zooming_stopped === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11615 // remove not visible matrix rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11616 if (new_ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11618 // remove downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11619 d3.selectAll(params.root + ' .ds' + String(new_ds_level) + '_row').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11620 if (_.contains(params.viz.viz_nodes.row, d.name) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11621 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11622 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11623 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11624 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11625 // remove real data rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11626 d3.selectAll(params.root + ' .row').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11627 if (_.contains(params.viz.viz_nodes.row, d.name) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11628 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11629 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11630 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11631 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11633 // remove not visible row labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11634 d3.selectAll(params.root + ' .row_label_group').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11635 if (_.contains(params.viz.viz_nodes.row, d.name) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11636 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11637 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11638 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11639
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11640 // level change
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11641 if (new_ds_level != old_ds_level) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11642
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11643 // console.log('old: ' + String(old_ds_level) + ' new: '+ String(new_ds_level));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11644
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11645 // all visible rows are missing at new downsampling level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11646 missing_rows = params.viz.viz_nodes.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11647
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11648 // remove old level rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11649 d3.selectAll(params.root + ' .ds' + String(old_ds_level) + '_row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11650 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11651 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11653 // console.log('missing_rows: ' + String(missing_rows))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11654 // console.log(missing_rows)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11656 // only make new matrix_rows if there are missing rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11657 if (missing_rows.length >= 1 || missing_rows === 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11658 make_matrix_rows(params, inst_matrix, missing_rows, new_ds_level);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11659 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11661 // only make new row_labels if there are missing row_labels, downsampled, and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11662 // not zooming out or zooming has stopped
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11663 if (new_ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11665 if (zooming_out === false || zooming_stopped) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11666
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11667 // check if labels need to be made
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11668 ///////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11669 // get the names visible row_labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11670 var visible_row_labels = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11671 d3.selectAll(params.root + ' .row_label_group').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11672 visible_row_labels.push(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11673 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11675 // find missing labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11676 var missing_row_labels = _.difference(params.viz.viz_nodes.row, visible_row_labels);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11678 // make labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11679 //////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11680 // only make row labels if there are any missing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11681 var addback_thresh = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11682 if (missing_row_labels.length > addback_thresh) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11683 make_row_labels(cgm, missing_row_labels);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11684 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11685 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11686 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11687 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11689 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11690 /* 107 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11691 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11693 module.exports = function find_viz_rows(params, viz_area) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11695 var should_be_rows = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11696 var curr_rows = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11697
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11698 // find rows that should be visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11699 var y_trans;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11700
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11701 // default y_scale (no downsampling)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11702 var y_scale = params.viz.y_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11703 var ds_level = params.viz.ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11704 var row_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11705 var row_class = '.row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11706
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11707 // if downsampling redefine variables
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11708 if (ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11709 y_scale = params.viz.ds[ds_level].y_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11710 row_names = d3.range(params.matrix.ds_matrix[ds_level].length).map(String);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11711 row_class = '.ds' + String(ds_level) + '_row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11714 // find rows that should be visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11715 for (var i = 0; i < row_names.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11716 y_trans = y_scale(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11717 if (y_trans < viz_area.max_y && y_trans > viz_area.min_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11718 should_be_rows.push(row_names[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11719 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11720 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11722 // find currently visible rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11723 d3.selectAll(params.root + ' ' + row_class).each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11724 curr_rows.push(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11725 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11727 // nodes that should be visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11728 params.viz.viz_nodes.row = should_be_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11729 // nodes that are visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11730 params.viz.viz_nodes.curr_row = curr_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11731 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11733 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11734 /* 108 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11735 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11737 module.exports = function make_row_visual_aid_triangles(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11739 if (d3.select(params.root + ' .row_cat_group path').empty() === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11740 d3.selectAll(params.root + ' .row_cat_group').append('path').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11741 var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11742 var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11743 var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11744 var mid_y = params.viz.y_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11745 var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11746 var final_y = params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11747 var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' + mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11748 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11749 }).attr('fill', '#eee').style('opacity', params.viz.triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11750 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11751 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11753 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11754 /* 109 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11755 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11756
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11757 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11759 module.exports = function make_col_tooltips(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11760
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11761 if (params.labels.show_label_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11763 // remove old col tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11764 d3.selectAll(params.viz.root_tips + '_col_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11765
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11766 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11767 var col_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11768 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11769 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_col_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11770 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11771 }).direction('w').offset([20, 0]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11772 var inst_name = d.name.replace(/_/g, ' ').split('#')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11773 return "<span>" + inst_name + "</span>";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11774 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11775
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11776 d3.select(params.viz.viz_wrapper).select('svg').select(params.root + ' .col_zoom_container').selectAll('.col_label_group').select('text').call(col_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11778 d3.select(params.root + ' .col_zoom_container').selectAll('.col_label_group').on('mouseover', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11780 d3.selectAll(params.viz.root_tips + '_col_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11781
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11782 col_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11783 if (params.col_tip_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11784 params.col_tip_callback(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11785 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11786 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11787 col_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11789 d3.selectAll(params.viz.root_tips + '_col_tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11790 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11791 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11792 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11794 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11795 /* 110 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11796 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11797
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11798 module.exports = function col_viz_aid_triangle(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11800 // x and y are flipped since its rotated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11801 var reduce_rect_width = params.viz.x_scale.rangeBand() * 0.36;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11802 var origin_y = -params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11803 var start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11804 var final_x = params.viz.x_scale.rangeBand() - reduce_rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11805 var start_y = -(params.viz.x_scale.rangeBand() - reduce_rect_width + params.viz.border_width.x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11806 var final_y = -params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11807 var output_string = 'M ' + origin_y + ',0 L ' + start_y + ',' + start_x + ', L ' + final_y + ',' + final_x + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11808 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11809 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11811 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11812 /* 111 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11813 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11814
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11815 module.exports = function (params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11817 d3.select(params.viz.viz_svg).append('rect').attr('fill', params.viz.background_color).attr('height', params.viz.super_labels.dim.width + 'px').attr('width', '3000px').classed('super_col_bkg', true).classed('white_bars', true).attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.super_labels.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11818
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11819 d3.select(params.viz.viz_svg).append('text').attr('class', 'super_col').text(params.labels.super.col).attr('text-anchor', 'center').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11820
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11821 var inst_text_width = d3.select(this)[0][0].getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11822
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11823 var inst_x = params.viz.clust.dim.width / 2 + params.viz.norm_labels.width.row - inst_text_width / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11824 var inst_y = params.viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11825 return 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11826 }).style('font-size', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11827 var inst_font_size = params.labels.super_label_fs * params.labels.super_label_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11828 return inst_font_size + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11829 }).style('font-weight', 300);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11830
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11831 d3.select(params.viz.viz_svg).append('rect').attr('fill', params.viz.background_color).attr('width', params.viz.super_labels.dim.width + 'px').attr('height', '3000px').classed('super_row_bkg', true).classed('white_bars', true).attr('transform', 'translate(' + params.viz.super_labels.margin.left + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11833 // append super title row group - used to separate translation from rotation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11834 d3.select(params.viz.viz_svg).append('g').classed('super_row', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11835 // position in the middle of the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11836 var inst_x = params.viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11837 var inst_y = params.viz.clust.dim.height / 2 + params.viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11838 return 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11839 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11841 // super row label (rotate the already translated title )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11842 d3.select(params.root + ' .super_row').append('text').text(params.labels.super.row).attr('text-anchor', 'center').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11843 var inst_text_width = d3.select(this)[0][0].getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11844 var inst_x_offset = inst_text_width / 2 + params.viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11845 var inst_offset = 'translate(0,' + inst_x_offset + '), rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11846 return inst_offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11847 }).style('font-size', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11848 var inst_font_size = params.labels.super_label_fs * params.labels.super_label_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11849 return inst_font_size + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11850 }).style('font-weight', 300)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11851 .attr("dy", "1em");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11852 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11853
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11854 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11855 /* 112 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11856 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11857
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11858 var get_cat_title = __webpack_require__(113);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11859 var ini_cat_reorder = __webpack_require__(114);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11860 var make_row_cat_super_labels = __webpack_require__(122);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11861 var make_dendro_crop_buttons = __webpack_require__(60);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11862
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11863 module.exports = function Spillover(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11865 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11866
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11867 var viz = params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11868
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11869 // hide spillover from slanted column labels on right side
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11870 d3.select(viz.root + ' .col_container').append('path').style('stroke-width', '0').attr('d', 'M 0,0 L 1000,-1000, L 1000,0 Z').attr('fill', viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11871 .attr('class', 'right_slant_triangle').attr('transform', 'translate(' + viz.clust.dim.width + ',' + viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11873 // hide spillover from slanted column labels on left side
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11874 d3.select(viz.root + ' .col_container').append('path').style('stroke-width', '0').attr('d', 'M 0,0 L 500,-500, L 0,-500 Z').attr('fill', viz.background_color).attr('class', 'left_slant_triangle')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11875 // shift left by 1 px to prevent cutting off labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11876 .attr('transform', 'translate(-1,' + viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11877
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11878 var rect_height = viz.clust.margin.top + viz.uni_margin / 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11879 // white rect to cover excess labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11880 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11881 .attr('width', viz.clust.margin.left).attr('height', rect_height).attr('class', 'top_left_white');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11883 var inst_height = viz.cat_room.col + 1.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11884 // white rect to cover excess labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11885 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color).attr('width', 2 * viz.clust.dim.width).attr('height', inst_height).attr('class', 'top_right_white').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11886 var tmp_left = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11887 var tmp_top = viz.norm_labels.width.col + viz.norm_labels.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11888 return 'translate(' + tmp_left + ', ' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11889 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11890
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11891 x_offset = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11892 y_offset = viz.norm_labels.margin.top + viz.norm_labels.width.col + 2.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11893 var cat_text_size = 1.15 * viz.cat_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11894 var cat_super_opacity = 0.65;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11895 var extra_y_room = 1.25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11897 // col category super labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11898 if (viz.show_categories.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11899
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11900 d3.select(viz.viz_svg).selectAll().data(viz.all_cats.col).enter().append('text').classed('col_cat_super', true).style('font-size', cat_text_size + 'px').style('opacity', cat_super_opacity).style('cursor', 'default').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11901 var inst_cat = parseInt(d.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11902 var inst_y = y_offset + extra_y_room * viz.cat_room.symbol_width * inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11903 return 'translate(' + x_offset + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11904 }).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11905 return get_cat_title(viz, d, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11906 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11907 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11909 // row category super labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11910 make_row_cat_super_labels(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11912 // white border bottom - prevent clustergram from hitting border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11913 if (viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11914 // quick fix to make room for crop buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11915 y_offset = viz.clust.margin.top + viz.clust.dim.height + viz.dendro_room.col - 2 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11916 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11917 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11918 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11920 var b_spill_container = d3.select(viz.viz_svg).append('g').classed('bottom_spillover_container', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11921 // shift up enough to show the entire border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11922 return 'translate(0,' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11923 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11925 b_spill_container.append('rect').attr('class', 'bottom_spillover').attr('fill', viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11926 .attr('width', viz.svg_dim.width).attr('height', 2 * viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11928 x_offset = viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11929 y_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11930 b_spill_container.append('g').classed('col_dendro_icons_container', true).attr('transform', 'translate(' + x_offset + ',' + y_offset + ')').append('g').classed('col_dendro_icons_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11932 make_dendro_crop_buttons(cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11934 var x_offset = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11935 var y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11936 var tmp_width = viz.cat_room.col + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11937 var tmp_height = viz.cat_room.row + 10 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11938 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color).attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11939 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11940 }).classed('white_bars', true).classed('dendro_corner_spillover', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11941
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11942 // hide spillover left top of col dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11943 x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11944 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11945 tmp_width = viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11946 tmp_height = viz.clust.dim.height * 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11947 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color).attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11948 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11949 }).classed('white_bars', true).classed('dendro_col_spillover', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11950
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11951 ini_cat_reorder(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11952 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11953
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11954 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11955 /* 113 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11956 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11958 module.exports = function get_cat_title(viz, inst_cat, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11959 var cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11961 // make default title if none is given
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11962 if (viz.cat_names[inst_rc][inst_cat] === inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11963 var inst_num = parseInt(inst_cat.split('-')[1], 10) + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11964 // generate placeholder title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11965 cat_title = 'Category ' + inst_num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11966 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11967 // make real title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11968 cat_title = viz.cat_names[inst_rc][inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11969 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11970
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11971 return cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11972 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11973
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11974 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11975 /* 114 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11976 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11978 var all_reorder = __webpack_require__(115);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11979
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11980 module.exports = function ini_cat_reorder(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11981 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11983 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11984
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11985 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11986
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11987 if (params.viz.show_categories[inst_rc]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11988 d3.selectAll(params.root + ' .' + inst_rc + '_cat_super').on('dblclick', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11989
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11990 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11991 inst_rc = 'both';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11992 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11994 d3.selectAll(params.root + ' .toggle_' + inst_rc + '_order .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11996 var order_id = this.__data__.replace('-', '_') + '_index';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11997 if (params.viz.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11998 all_reorder(cgm, order_id, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
11999 all_reorder(cgm, order_id, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12000 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12001 all_reorder(cgm, order_id, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12002 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12003 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12004 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12005 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12006 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12007
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12008 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12009 /* 115 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12010 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12011
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12012 var toggle_dendro_view = __webpack_require__(54);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12013 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12014 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12015 var calc_downsampled_levels = __webpack_require__(27);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12016 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12017 var get_previous_zoom = __webpack_require__(101);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12018
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12019 module.exports = function (cgm, inst_order, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12020
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12021 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12022
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12023 var prev_zoom = get_previous_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12024
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12025 var delay_reorder = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12026 if (prev_zoom.zoom_y != 1 || prev_zoom.zoom_x != 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12027 // reset zoom before reordering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12028 two_translate_zoom(cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12029 delay_reorder = 1200;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12030 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12031
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12032 // row/col names are swapped, will improve later
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12033 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12034 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12035 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12036 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12037 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12039
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12040 params.viz.run_trans = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12042 // save order state
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12043 if (other_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12044 params.viz.inst_order.row = inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12045 } else if (other_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12046 params.viz.inst_order.col = inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12047 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12049 if (params.viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12050 toggle_dendro_view(cgm, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12051 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12053 if (other_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12054 params.viz.x_scale.domain(params.matrix.orders[params.viz.inst_order.row + '_row']);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12055 } else if (other_rc == 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12056 params.viz.y_scale.domain(params.matrix.orders[params.viz.inst_order.col + '_col']);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12057 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12058
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12059 // only animate transition if there are a small number of tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12060 var t;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12061 if (d3.selectAll(params.root + ' .tile')[0].length < params.matrix.def_large_matrix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12062 t = d3.select(params.root + ' .viz_svg').transition().duration(2500).delay(delay_reorder);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12063 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12064 t = d3.select(params.root + ' .viz_svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12065 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12067 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12068 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12069
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12070 // only update matrix if not downsampled (otherwise rows are updated)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12071 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12072
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12073 t.selectAll('.row').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12074 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12075 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12076 }).selectAll('.tile').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12077 return 'translate(' + params.viz.x_scale(d.pos_x) + ' , 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12078 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12079
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12080 t.selectAll('.tile_up').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12081 return 'translate(' + params.viz.x_scale(d.pos_x) + ' , 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12082 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12084 t.selectAll('.tile_dn').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12085 return 'translate(' + params.viz.x_scale(d.pos_x) + ' , 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12086 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12087 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12089 // Move Row Labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12090 t.select('.row_label_zoom_container').selectAll('.row_label_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12091 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12092 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12093 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12095 // Move Col Labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12096 t.select('.col_zoom_container').selectAll('.col_label_text').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12097 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12098 return 'translate(' + params.viz.x_scale(inst_index) + ') rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12099 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12100
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12101 // reorder row categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12102 t.selectAll('.row_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12103 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12104 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12105 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12106
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12107 // reorder col_class groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12108 t.selectAll('.col_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12109 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12110 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12111 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12113 // redefine x and y positions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12114 params.network_data.links.forEach(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12115 d.x = params.viz.x_scale(d.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12116 d.y = params.viz.y_scale(d.source);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12117 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12119 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12121 // calculate downsmapling if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12122 if (params.viz.ds_num_levels > 0 && params.viz.ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12124 calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12125 var zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12126 var zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12127 var make_all_rows = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12128
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12129 // show_visible_area is also run with two_translate_zoom, but at that point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12130 // the parameters were not updated and two_translate_zoom if only run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12131 // if needed to reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12132 show_visible_area(cgm, zooming_stopped, zooming_out, make_all_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12133 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12135 setTimeout(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12136 params.viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12137 }, 2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12138 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12139
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12140 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12141 /* 116 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12142 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12144 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12145 var label_constrain_and_trim = __webpack_require__(117);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12146 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12147 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12148 var toggle_grid_lines = __webpack_require__(121);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12150 module.exports = function two_translate_zoom(cgm, pan_dx, pan_dy, fin_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12152 // console.log('pan_dy: ' + String(pan_dy))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12154 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12156 d3.selectAll(params.viz.root_tips).style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12157
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12158 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12159
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12160 show_visible_area(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12162 // do not allow while transitioning, e.g. reordering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12163 if (!params.viz.run_trans) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12165 // define the commonly used variable half_height
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12166 var half_height = params.viz.clust.dim.height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12167
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12168 // y pan room, the pan room has to be less than half_height since
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12169 // zooming in on a gene that is near the top of the clustergram also causes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12170 // panning out of the visible region
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12171 var y_pan_room = half_height / fin_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12173 // prevent visualization from panning down too much
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12174 // when zooming into genes near the top of the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12175 if (pan_dy >= half_height - y_pan_room) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12176
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12177 // console.log(' prevent visualization from panning down too much')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12179 // explanation of panning rules
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12180 /////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12181 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12182 prevent the clustergram from panning down too much
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12183 if the amount of panning is equal to the half_height then it needs to be reduced
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12184 effectively, the the visualization needs to be moved up (negative) by some factor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12185 of the half-width-of-the-visualization.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12186 If there was no zooming involved, then the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12187 visualization would be centered first, then panned to center the top term
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12188 this would require a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12189 correction to re-center it. However, because of the zooming the offset is
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12190 reduced by the zoom factor (this is because the panning is occurring on something
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12191 that will be zoomed into - this is why the pan_dy value is not scaled in the two
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12192 translate transformations, but it has to be scaled afterwards to set the translate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12193 vector)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12194 pan_dy = half_height - (half_height)/fin_zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12195 if pan_dy is greater than the pan room, then panning has to be restricted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12196 start by shifting back up (negative) by half_height/fin_zoom then shift back down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12197 by the difference between half_height and pan_dy (so that the top of the clustergram is
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12198 visible)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12199 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12201 var shift_top_viz = half_height - pan_dy;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12202 var shift_up_viz = -half_height / fin_zoom + shift_top_viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12204 // reduce pan_dy so that the visualization does not get panned to far down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12205 pan_dy = pan_dy + shift_up_viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12206 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12208 // prevent visualization from panning up too much
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12209 // when zooming into genes at the bottom of the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12210 if (pan_dy < -(half_height - y_pan_room)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12212 shift_top_viz = half_height + pan_dy;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12213
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12214 shift_up_viz = half_height / fin_zoom - shift_top_viz; //- move_up_one_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12216 // reduce pan_dy so that the visualization does not get panned to far down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12217 pan_dy = pan_dy + shift_up_viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12218 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12219
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12220 // will improve this !!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12221 var zoom_y = fin_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12222 var zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12224 // search duration - the duration of zooming and panning
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12225 var search_duration = 700;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12227 // center_y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12228 var center_y = -(zoom_y - 1) * half_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12230 // transform clust group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12231 ////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12232 d3.select(params.root + ' .clust_group').transition().duration(search_duration)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12233 // first apply the margin transformation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12234 // then zoom, then apply the final transformation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12235 .attr('transform', 'translate(' + [0, 0 + center_y] + ')' + ' scale(' + zoom_x + ',' + zoom_y + ')' + 'translate(' + [pan_dx, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12237 // transform row labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12238 d3.select(params.root + ' .row_label_zoom_container').transition().duration(search_duration).attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + zoom_y + ',' + zoom_y + ')' + 'translate(' + [0, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12240 // transform row_cat_container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12241 // use the offset saved in params, only zoom in the y direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12242 d3.select(params.root + ' .row_cat_container').transition().duration(search_duration).attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + 1 + ',' + zoom_y + ')' + 'translate(' + [0, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12244 d3.select(params.root + ' .row_dendro_container').transition().duration(search_duration).attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + zoom_x + ',' + zoom_y + ')' + 'translate(' + [params.viz.uni_margin / 2, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12246 // toggle crop buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12247 var inst_button_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12248 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12249
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12250 inst_button_opacity = d3.select(params.root + ' .' + inst_rc + '_dendro_crop_buttons').style('opacity');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12251 d3.selectAll(params.root + ' .' + inst_rc + '_dendro_crop_buttons').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12252 setTimeout(show_crop_buttons, 700, inst_rc, inst_button_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12253 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12255 // transform col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12256 d3.select(params.root + ' .col_zoom_container').transition().duration(search_duration).attr('transform', ' scale(' + zoom_x + ',' + zoom_x + ')' + 'translate(' + [pan_dx, 0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12258 // transform col_class
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12259 d3.select(params.root + ' .col_cat_container').transition().duration(search_duration).attr('transform', ' scale(' + zoom_x + ',' + 1 + ')' + 'translate(' + [pan_dx, 0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12261 d3.select(params.root + ' .col_dendro_container').transition().duration(search_duration).attr('transform', ' scale(' + zoom_x + ',' + 1 + ')' + 'translate(' + [pan_dx, params.viz.uni_margin / 2] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12263 // set y translate: center_y is positive, positive moves the visualization down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12264 // the translate vector has the initial margin, the first y centering, and pan_dy
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12265 // times the scaling zoom_y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12266 var net_y_offset = params.viz.clust.margin.top + center_y + pan_dy * zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12267 var net_x_offset = params.viz.clust.margin.left + pan_dx;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12269 // reset the zoom and translate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12270 params.zoom_behavior.scale(zoom_y).translate([net_x_offset, net_y_offset]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12271
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12272 label_constrain_and_trim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12273
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12274 // re-size of the highlighting rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12275 /////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12276 if (d3.select(params.root + ' .row_label_zoom_container text').empty() === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12277 d3.select(params.root + ' .row_label_zoom_container').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12278 // get the bounding box of the row label text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12279 var bbox = d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12281 // use the bounding box to set the size of the rect
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12282 d3.select(this).select('rect').attr('x', bbox.x * 0.5).attr('y', 0).attr('width', bbox.width * 0.5).attr('height', params.viz.y_scale.rangeBand()).style('fill', 'yellow');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12283 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12284 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12285
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12286 // reset crop button zooming
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12287 d3.select(params.root + ' .row_dendro_icons_group').attr('transform', 'translate(' + [0, 0 + center_y] + ')' + ' scale(' + zoom_x + ',' + zoom_y + ')' + 'translate(' + [pan_dx, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12289 d3.select(params.root + ' .row_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12290 var inst_x = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12291 var inst_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12292 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(1, ' + 1 / zoom_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12293 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12294
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12295 // console.log('zooming x and y')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12296 // console.log(zoom_x)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12297 // console.log(zoom_y)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12299 // need to improve behavior
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12300 d3.select(params.root + ' .col_dendro_icons_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12301 var inst_trans =
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12302 // 'translate(' + [0, 0 + center_y] + ')' +
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12303 ' scale(' + zoom_x + ',' + zoom_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12304 // + 'translate(' + [pan_dx, pan_dy ] + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12305 return inst_trans;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12306 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12308 d3.select(params.root + ' .col_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12309 var inst_x = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12310 var inst_y = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12311 // return 'translate('+ inst_x +',' + inst_y + ') ' + 'scale('+1/zoom_x+',1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12312 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(1,1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12313 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12314
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12315 // column value bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12316 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12317 // reduce the height of the column value bars based on the zoom applied
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12318 // recalculate the height and divide by the zooming scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12319 // col_label_obj.select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12320 if (utils.has(params.network_data.col_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12322 d3.selectAll(params.root + ' .col_bars').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12323 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12324 if (d.value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12325 inst_value = params.labels.bar_scale_col(d.value) / zoom_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12326 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12327 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12328 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12329 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12331 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12333 d3.selectAll(params.root + ' .row_bars').transition().duration(search_duration).attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12334 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12335 inst_value = params.labels.bar_scale_row(Math.abs(d.value)) / zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12336 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12337 }).attr('x', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12338 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12339 inst_value = -params.labels.bar_scale_row(Math.abs(d.value)) / zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12340 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12341 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12344 toggle_grid_lines(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12345 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12347 function show_crop_buttons(inst_rc, inst_button_opacity) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12348 d3.selectAll(params.root + ' .' + inst_rc + '_dendro_crop_buttons').transition().duration(search_duration).style('opacity', inst_button_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12349 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12350 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12352 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12353 /* 117 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12354 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12355
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12356 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12357 var trim_text = __webpack_require__(118);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12358 var constrain_font_size = __webpack_require__(119);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12359
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12360 module.exports = function label_constrain_and_trim(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12362 // console.log('label_constrain_and_trim');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12363
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12364 // reset text in rows and columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12365 d3.selectAll(params.root + ' .row_label_group').select('text').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12366 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12367 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12369 d3.selectAll(params.root + ' .col_label_text').select('text').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12370 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12371 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12373 constrain_font_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12375 d3.selectAll(params.root + ' .row_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12376 trim_text(params, this, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12377 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12379 d3.selectAll(params.root + ' .col_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12380 trim_text(params, this, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12381 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12382 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12383
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12384 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12385 /* 118 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12386 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12389 module.exports = function (params, inst_selection, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12390 if (d3.select(inst_selection).style('display') != 'none') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12391
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12392 // trim text that is longer than the container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12393 var inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12394 var inst_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12395 var trimmed_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12396 var current_num_char;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12397 var inst_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12398 var original_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12399 var keep_num_char;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12400 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12401
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12402 var max_width = params.viz.norm_labels.width[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12403
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12404 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12405 if (params.viz.zoom_ratio.y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12406 inst_zoom = params.zoom_behavior.scale() / params.viz.zoom_ratio.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12407 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12408 inst_zoom = params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12409 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12410 // num_trims = params.labels.row_max_char;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12411 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12412 if (params.viz.zoom_ratio.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12413 inst_zoom = params.zoom_behavior.scale() / params.viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12414 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12415 inst_zoom = params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12416 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12417 // num_trims = params.labels.col_max_char;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12418 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12419
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12420 var num_trims;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12421 d3.select(inst_selection).select('text').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12422 num_trims = d.name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12423 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12425 var tmp_width = d3.select(inst_selection).select('text').node().getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12427 inst_width = calc_width(tmp_width, inst_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12428
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12429 if (inst_width > max_width) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12431 for (i = 1; i < num_trims; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12432 if (inst_width > max_width) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12434 d3.select(inst_selection).select('text').text(trim);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12436 tmp_width = d3.select(inst_selection).select('text').node().getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12437
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12438 inst_width = calc_width(tmp_width, inst_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12439 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12440 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12441 } else if (inst_width < max_width * 0.75) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12443 for (i = 1; i < num_trims; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12444 if (inst_width < max_width * 0.75) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12446 d3.select(inst_selection).select('text').text(add_back);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12448 tmp_width = d3.select(inst_selection).select('text').node().getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12450 inst_width = calc_width(tmp_width, inst_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12451 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12452 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12453 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12454 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12456 function trim() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12457 inst_text = d3.select(this).text();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12458 current_num_char = inst_text.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12459 keep_num_char = current_num_char - 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12460 trimmed_text = inst_text.substring(0, keep_num_char) + '..';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12461 return trimmed_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12462 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12463
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12464 function add_back(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12465 inst_text = d3.select(this).text();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12466 if (inst_text.slice(-2) === '..') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12467 current_num_char = inst_text.length - 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12468 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12469 current_num_char = inst_text.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12470 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12471
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12472 original_text = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12473 keep_num_char = current_num_char + 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12474 trimmed_text = original_text.substring(0, keep_num_char) + '..';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12475
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12476 // if '..' was added to original text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12477 if (trimmed_text.length > original_text.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12478 trimmed_text = original_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12479 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12481 return trimmed_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12482 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12484 function calc_width(tmp_width, inst_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12485 if (inst_zoom < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12486 inst_width = tmp_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12487 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12488 inst_width = tmp_width * inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12489 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12490
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12491 return inst_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12492 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12493 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12494
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12495 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12496 /* 119 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12497 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12499 var calc_real_font_size = __webpack_require__(120);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12501 module.exports = function constrain_font_size(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12502
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12503 var tmp_font_size = params.labels.default_fs_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12504 var inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12505 var min_font_size = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12507 var real_font_size = calc_real_font_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12509 // rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12510 ////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12511 if (real_font_size.row > min_font_size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12513 if (real_font_size.row > params.labels.max_allow_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12515 if (params.viz.zoom_ratio.y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12516 inst_zoom = params.zoom_behavior.scale() / params.viz.zoom_ratio.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12517 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12518 inst_zoom = params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12519 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12521 if (inst_zoom < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12522 inst_zoom = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12523 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12525 tmp_font_size = params.labels.max_allow_fs / inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12527 d3.selectAll(params.root + ' .row_label_group').select('text').style('font-size', tmp_font_size + 'px').attr('y', params.viz.rect_height * 0.5 + tmp_font_size * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12528 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12529 d3.selectAll(params.root + ' .row_label_group').select('text').style('font-size', params.labels.default_fs_row + 'px').attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12530 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12531 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12532
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12533 // columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12534 //////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12535 if (real_font_size.col > min_font_size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12536
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12537 if (real_font_size.col > params.labels.max_allow_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12538
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12539 if (params.viz.zoom_ratio.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12540 inst_zoom = params.zoom_behavior.scale() / params.viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12541 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12542 inst_zoom = params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12543 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12545 if (inst_zoom < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12546 inst_zoom = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12547 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12549 tmp_font_size = params.labels.max_allow_fs / inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12550
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12551 if (tmp_font_size > 0.7 * params.viz.rect_width) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12552 tmp_font_size = 0.7 * params.viz.rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12553 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12554
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12555 d3.selectAll(params.root + ' .col_label_text').select('text').style('font-size', tmp_font_size + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12556 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12557 d3.selectAll(params.root + ' .col_label_text').select('text').style('font-size', params.labels.default_fs_col + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12558 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12559 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12560 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12562 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12563 /* 120 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12564 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12565
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12566 module.exports = function calc_real_font_size(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12567
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12568 var real_font_size = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12569 // zoom_switch behavior has to change with zoom_ratio.y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12570 if (params.viz.zoom_ratio.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12571 real_font_size.row = params.labels.default_fs_row * params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12572 real_font_size.col = params.labels.default_fs_col * params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12573 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12574 real_font_size.row = params.labels.default_fs_row * params.zoom_behavior.scale() / params.viz.zoom_ratio.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12575 real_font_size.col = params.labels.default_fs_col * params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12576 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12578 return real_font_size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12579 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12581 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12582 /* 121 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12583 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12585 module.exports = function toggle_grid_lines(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12587 if (params.zoom_info.zoom_x * params.viz.border_width.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12588 d3.selectAll(params.root + ' .vert_lines').select('line').style('display', 'block').style('opacity', 0).transition().style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12589 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12590 d3.selectAll(params.root + ' .vert_lines').select('line').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12591 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12593 if (params.zoom_info.zoom_y * params.viz.border_width.y > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12594 d3.selectAll(params.root + ' .horz_lines').select('line').style('display', 'block').style('opacity', 0).transition().style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12595 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12596 d3.selectAll(params.root + ' .horz_lines').select('line').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12597 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12598 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12600 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12601 /* 122 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12602 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12603
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12604 var get_cat_title = __webpack_require__(113);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12605 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12606
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12607 module.exports = function make_row_cat_super_labels(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12609 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12611 var viz = params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12612 var extra_x_room = 2.75;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12614 if (d3.select(params.root + ' .row_cat_label_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12616 d3.select(cgm.params.viz.viz_svg).append('g').classed('row_cat_label_container', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12618 // append background section for optional value-bars (e.g. enrichment pvals)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12619 d3.select(cgm.params.viz.viz_svg + ' .row_cat_label_container').append('g').classed('row_cat_label_bar_container', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12620 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12622 var x_offset = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12623 var y_offset = viz.norm_labels.margin.top + viz.norm_labels.width.col + 2.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12624 var cat_text_size = 1.15 * viz.cat_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12625 var cat_super_opacity = 0.65;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12626 var extra_y_room = 1.25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12628 d3.select(params.root + ' .row_cat_label_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12629 x_offset = viz.norm_labels.margin.left + viz.norm_labels.width.row + viz.cat_room.symbol_width + extra_x_room * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12630 y_offset = viz.clust.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12631 return 'translate(' + x_offset + ',' + y_offset + ') rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12632 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12633
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12634 // clear old categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12635 d3.selectAll(params.root + ' .row_cat_label_container text').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12636 d3.selectAll(params.root + ' .row_cat_selection_bar').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12637 // d3.selectAll(params.root+' .row_cat_label_bar_container rect').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12639 // remove any old row_cat_super tooltips from this visualization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12640 d3.selectAll(cgm.params.viz.root_tips + '_row_cat_super').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12642 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12643 var tmp_y_offset = 50; // viz.clust.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12644 var tmp_x_offset = -75;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12645 var cat_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12646 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12647 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_row_cat_super';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12648 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12649 }).direction('south_custom').offset([tmp_y_offset, tmp_x_offset]).style('display', 'none').style('opacity', 0).html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12650
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12651 var full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12653 var tmp_string = params.network_data.row_nodes[0][d];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12654
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12655 if (tmp_string.indexOf('<p>') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12656
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12657 var start_string = tmp_string.split(': ')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12658 var end_string = tmp_string.split('<p>')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12660 full_string = start_string + '<p>' + end_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12661 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12663 full_string = get_cat_title(viz, d, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12664 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12665
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12666 return full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12667 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12668
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12669 var unit_length = extra_y_room * viz.cat_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12670 var bar_width = unit_length * 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12671
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12672 // show row label categories even if viewing a simmilarity matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12674 d3.select(params.root + ' .row_cat_label_container').selectAll().data(viz.all_cats.row).enter().append('text').style('width', '100px').style('height', bar_width + 'px').classed('row_cat_super', true).style('font-size', cat_text_size + 'px').style('opacity', cat_super_opacity).style('cursor', 'default').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12675 var inst_y = extra_y_room * viz.cat_room.symbol_width * parseInt(d.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12676 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12677 }).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12678
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12679 return get_cat_title(viz, d, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12680 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12681
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12682 // selection bar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12683 ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12684 d3.select(params.root + ' .row_cat_label_container').selectAll().data(viz.all_cats.row).enter().append('rect').classed('row_cat_super', true).classed('row_cat_selection_bar', true).style('height', bar_width + 'px').style('fill', 'green').style('width', '120px').style('opacity', 0).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12685 var inst_y = unit_length * (parseInt(d.split('-')[1], 10) - 0.75);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12686 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12687 }).on('mouseover', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12689 d3.selectAll(params.viz.root_tips + '_row_cat_super').style('display', 'block').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12691 cat_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12692 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12693 cat_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12694 // might not need
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12695 d3.selectAll('.d3-tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12697 d3.selectAll(params.viz.root_tips + '_row_cat_super').style('display', 'none').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12698 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12700 // row category super-label mouseover
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12701 //////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12702 if (d3.select(params.root + ' .row_cat_selection_bar').empty() === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12703 d3.selectAll(params.root + ' .row_cat_selection_bar').call(cat_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12704 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12705
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12706 if (_.has(params.network_data, 'row_cat_bars')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12708 // Enrichrgram title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12709 /////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12710 d3.select(params.root + ' .enr_title').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12712 var enr_title = d3.select(params.root + ' .viz_svg').append('g').classed('enr_title', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12713 var trans = d3.select(params.root + ' .row_cat_label_container').attr('transform').split('(')[1].split(')')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12714 var x_offset = Number(trans.split(',')[0]) - 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12716 return 'translate(' + String(x_offset) + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12717 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12719 enr_title.append('rect').attr('width', params.viz.cat_room.row).attr('height', 25).attr('fill', 'white');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12720
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12721 var library_string = params.network_data.enrichrgram_lib.substring(0, 40);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12723 enr_title.append('text').attr('transform', 'translate(0, 17)').text(library_string.replace(/_/g, ' ')).style('font-size', '15px').attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12725 // Enrichr bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12726 ////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12727 d3.selectAll(params.root + ' .enrichr_bars').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12729 var bar_height = params.viz.clust.margin.top - 35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12730 var max_score = params.network_data.row_cat_bars[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12731 var bar_scale = d3.scale.linear().domain([0, max_score]).range([0, bar_height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12733 d3.select(params.root + ' .row_cat_label_bar_container').selectAll().data(params.network_data.row_cat_bars).enter().append('rect').classed('enrichr_bars', true).attr('height', bar_width + 'px').attr('fill', 'red').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12734 var bar_length = bar_scale(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12735 return bar_length + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12736 }).attr('opacity', 0.4).attr('transform', function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12737 var inst_y = unit_length * (i - 0.75);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12738 return 'translate(0, ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12739 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12740 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12741 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12742
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12743 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12744 /* 123 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12745 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12746
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12747 var resize_viz = __webpack_require__(124);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12748
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12749 module.exports = function initialize_resizing(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12751 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12753 var exp_button;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12754
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12755 // d3.select(window).on('resize', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12756
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12757 // // resize window
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12758 // if (params.viz.resize) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12759 // d3.select(window).on('resize', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12760
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12761 // d3.select(params.viz.viz_svg).style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12763 // var wait_time = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12764 // if (params.viz.run_trans === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12765 // wait_time = 2500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12766 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12768 // setTimeout(resize_viz, wait_time, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12769 // });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12770 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12771
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12772 // if (params.viz.expand_button) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12774 d3.select(params.root + ' .expand_button').on('click', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12775 var expand_opacity = 0.4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12776
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12777 if (d3.select(params.root + ' .expand_button').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12778 exp_button = d3.select(params.viz.viz_svg).append('text').attr('class', 'expand_button');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12779 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12780 exp_button = d3.select(params.root + ' .expand_button');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12781 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12783 exp_button.attr('text-anchor', 'middle').attr('dominant-baseline', 'central').attr('font-family', 'FontAwesome').attr('font-size', '30px').text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12784 if (params.viz.is_expand === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12785 // expand button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12786 return '\uf0b2';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12787 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12788 // menu button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12789 return '\uf0c9';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12790 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12791 }).attr('y', '25px').attr('x', '25px').style('cursor', 'pointer').style('opacity', expand_opacity).on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12792 d3.select(this).style('opacity', 0.75);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12793 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12794 d3.select(this).style('opacity', expand_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12795 }).on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12797 // expand view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12798 if (params.viz.is_expand === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12800 d3.select(this).text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12801 // menu button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12802 return '\uf0c9';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12803 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12804 params.viz.is_expand = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12806 d3.selectAll(params.root + ' .borders').style('fill', 'white');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12807 // d3.select(params.root+' .footer_section').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12808 d3.select(params.root + ' .sidebar_wrapper').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12810 // contract view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12811 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12813 d3.select(this).text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12814 // expand button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12815 return '\uf0b2';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12816 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12818 params.viz.is_expand = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12820 d3.selectAll(params.root + ' .borders').style('fill', '#eee');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12821 // d3.select(params.root+' .footer_section').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12822 d3.select(params.root + ' .viz_wrapper').style('width', '100px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12823 d3.select(params.root + ' .sidebar_wrapper').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12824 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12826 // // resize parent div
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12827 // set_viz_wrapper_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12829 d3.select(params.viz.viz_svg).style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12830 var wait_time = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12831 if (params.viz.run_trans == true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12832 wait_time = 2500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12833 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12834 setTimeout(resize_viz, wait_time, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12835 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12836 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12837 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12839 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12840 /* 124 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12841 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12842
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12843 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12844 var run_zoom = __webpack_require__(125);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12845 var ini_doubleclick = __webpack_require__(133);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12846 var reset_zoom = __webpack_require__(134);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12847 var resize_dendro = __webpack_require__(135);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12848 var resize_super_labels = __webpack_require__(136);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12849 var resize_spillover = __webpack_require__(137);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12850 var resize_borders = __webpack_require__(138);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12851 var resize_row_labels = __webpack_require__(139);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12852 var resize_highlights = __webpack_require__(140);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12853 var resize_row_viz = __webpack_require__(141);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12854 var resize_col_labels = __webpack_require__(142);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12855 var resize_col_text = __webpack_require__(143);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12856 var resize_col_triangle = __webpack_require__(144);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12857 var resize_col_hlight = __webpack_require__(145);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12858 var recalc_params_for_resize = __webpack_require__(146);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12859 var resize_row_tiles = __webpack_require__(147);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12860 var resize_label_bars = __webpack_require__(148);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12861 var label_constrain_and_trim = __webpack_require__(117);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12862 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12863 var toggle_dendro_view = __webpack_require__(54);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12864 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12865 var calc_viz_dimensions = __webpack_require__(18);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12866 var position_play_button = __webpack_require__(149);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12867 var make_row_cat_super_labels = __webpack_require__(122);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12868 var ini_cat_reorder = __webpack_require__(114);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12869 var position_svg_dendro_slider = __webpack_require__(150);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12870 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12871 var grid_lines_viz = __webpack_require__(151);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12873 module.exports = function resize_viz(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12875 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12877 var cont_dim = calc_viz_dimensions(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12879 d3.select(params.root + ' .play_button');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12880 // .style('opacity', 0.2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12881
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12883 d3.select(params.root + ' .sidebar_wrapper').style('height', cont_dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12885 d3.select(params.viz.viz_wrapper)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12886 // .style('float', 'left')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12887 .style('margin-top', cont_dim.top + 'px').style('width', cont_dim.width + 'px').style('height', cont_dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12889 params = recalc_params_for_resize(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12890
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12891 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12893 reset_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12895 var svg_group = d3.select(params.viz.viz_svg);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12897 // redefine x and y positions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12898 _.each(params.network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12899 d.x = params.viz.x_scale(d.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12900 d.y = params.viz.y_scale(d.source);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12901 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12902
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12903 // disable zoom while transitioning
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12904 svg_group.on('.zoom', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12906 params.zoom_behavior.scaleExtent([1, params.viz.square_zoom * params.viz.zoom_ratio.x]).on('zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12907 run_zoom(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12908 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12910 // reenable zoom after transition
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12911 if (params.viz.do_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12912 svg_group.call(params.zoom_behavior);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12913 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12914
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12915 // prevent normal double click zoom etc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12916 ini_doubleclick(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12918 svg_group.attr('width', params.viz.svg_dim.width).attr('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12920 svg_group.select('.super_background').style('width', params.viz.svg_dim.width).style('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12922 svg_group.select('.grey_background').attr('width', params.viz.clust.dim.width).attr('height', params.viz.clust.dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12924 setTimeout(position_play_button, 100, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12925
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12926 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12927 var row_nodes_names = utils.pluck(row_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12929 resize_row_tiles(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12930
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12931 svg_group.selectAll('.highlighting_rect').attr('width', params.viz.x_scale.rangeBand() * 0.80).attr('height', params.viz.y_scale.rangeBand() * 0.80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12932
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12933 resize_highlights(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12935 // resize row labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12936 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12938 resize_row_labels(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12939 resize_row_viz(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12941 // change the size of the highlighting rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12942 svg_group.selectAll('.row_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12943 var bbox = d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12944 d3.select(this).select('rect').attr('x', bbox.x).attr('y', 0).attr('width', bbox.width).attr('height', params.viz.rect_height).style('fill', 'yellow').style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12945 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12946 // highlight target genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12947 if (d.target === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12948 inst_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12949 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12950 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12951 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12952 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12953
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12954 // necessary to properly position row labels vertically
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12955 svg_group.selectAll('.row_label_group').select('text').attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12956
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12957 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12958 resize_label_bars(cgm, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12959 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12961 svg_group.selectAll('.row_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12962 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12963 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12964 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12965
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12966 svg_group.selectAll('.row_cat_group').select('path').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12967 var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12968 var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12969 var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12970 var mid_y = params.viz.rect_height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12971 var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12972 var final_y = params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12973 var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' + mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12974 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12975 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12977 var is_resize = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12978 if (params.viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12979 make_dendro_triangles(cgm, 'row', is_resize);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12980 make_dendro_triangles(cgm, 'col', is_resize);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12981 resize_dendro(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12983 toggle_dendro_view(cgm, 'row', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12984 toggle_dendro_view(cgm, 'col', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12985 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12986 resize_dendro(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12987 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12988
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12989 resize_col_labels(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12990 resize_col_text(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12991 resize_col_triangle(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12992 resize_col_hlight(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12994 resize_super_labels(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12995 resize_spillover(params.viz, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12997 grid_lines_viz(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
12999 resize_borders(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13001 // reset zoom and translate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13002 params.zoom_behavior.scale(1).translate([params.viz.clust.margin.left, params.viz.clust.margin.top]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13003
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13004 label_constrain_and_trim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13006 // reposition matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13007 d3.select(params.root + ' .clust_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13008
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13009 // removed, this was causing bugs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13010 if (cgm.params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13011 show_visible_area(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13012 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13014 make_row_cat_super_labels(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13015
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13016 d3.select(params.viz.viz_svg).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13018 ini_cat_reorder(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13020 d3.select(cgm.params.root + ' .row_slider_group').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13021 d3.select(cgm.params.root + ' .col_slider_group').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13022
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13023 setTimeout(position_svg_dendro_slider, 500, cgm, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13024 setTimeout(position_svg_dendro_slider, 500, cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13025 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13027 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13028 /* 125 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13029 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13031 var run_transformation = __webpack_require__(126);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13032 var zoom_rules_y = __webpack_require__(131);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13033 var zoom_rules_x = __webpack_require__(132);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13034
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13035 module.exports = function zoomed(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13036
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13037 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13038
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13039 var zoom_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13040 zoom_info.zoom_x = d3.event.scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13041 zoom_info.zoom_y = d3.event.scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13043 // subtract away the margin to easily calculate pan_room etc.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13044 zoom_info.trans_x = params.zoom_behavior.translate()[0] - params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13045 zoom_info.trans_y = params.zoom_behavior.translate()[1] - params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13046
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13047 d3.selectAll(params.viz.root_tips).style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13049 // transfer zoom_info to params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13050 params.zoom_info = zoom_rules_y(params, zoom_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13051 params.zoom_info = zoom_rules_x(params, zoom_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13053 // do not run transformation if moving slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13054 if (params.is_slider_drag === false && params.is_cropping === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13055
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13056 // reset translate vector - add back margins to trans_x and trans_y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13057 var new_x = params.zoom_info.trans_x + params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13058 var new_y = params.zoom_info.trans_y + params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13060 params.zoom_behavior.translate([new_x, new_y]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13061 cgm.params = params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13062
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13063 run_transformation(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13064 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13065 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13067 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13068 /* 126 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13069 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13070
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13071 var constrain_font_size = __webpack_require__(119);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13072 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13073 var resize_label_val_bars = __webpack_require__(127);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13074 var zoom_crop_triangles = __webpack_require__(62);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13075 var get_previous_zoom = __webpack_require__(101);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13076 var run_when_zoom_stopped = __webpack_require__(128);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13077 var check_zoom_stop_status = __webpack_require__(130);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13078
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13079 module.exports = function run_transformation(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13080
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13081 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13082
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13083 var zoom_info = params.zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13084
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13085 var prev_zoom = get_previous_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13086
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13087 d3.select(params.root + ' .clust_group').attr('transform', 'translate(' + [zoom_info.trans_x, zoom_info.trans_y] + ') scale(' + zoom_info.zoom_x + ',' + zoom_info.zoom_y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13089 d3.select(params.root + ' .row_label_zoom_container').attr('transform', 'translate(' + [0, zoom_info.trans_y] + ') scale(' + zoom_info.zoom_y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13090
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13091 d3.select(params.root + ' .col_zoom_container').attr('transform', 'translate(' + [zoom_info.trans_x, 0] + ') scale(' + zoom_info.zoom_x + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13092
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13093 d3.select(params.root + ' .row_cat_container').attr('transform', 'translate(' + [0, zoom_info.trans_y] + ') scale( 1,' + zoom_info.zoom_y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13095 d3.select(params.root + ' .row_dendro_container').attr('transform', 'translate(' + [params.viz.uni_margin / 2, zoom_info.trans_y] + ') ' + 'scale( 1,' + zoom_info.zoom_y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13097 d3.select(params.root + ' .row_dendro_icons_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13098 var inst_y = zoom_info.trans_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13099 var inst_translate = 'translate(' + [0, inst_y] + ') ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13100 var inst_zoom = 'scale(1, ' + zoom_info.zoom_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13101 var transform_string = inst_translate + inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13102 return transform_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13103 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13104
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13105 d3.select(params.root + ' .col_dendro_icons_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13106 var inst_x = zoom_info.trans_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13107 var inst_translate = 'translate(' + [inst_x, 0] + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13108 var inst_zoom = 'scale(' + zoom_info.zoom_x + ', 1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13109 var transform_string = inst_translate + inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13110 return transform_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13111 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13113 zoom_crop_triangles(params, zoom_info, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13114 zoom_crop_triangles(params, zoom_info, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13115
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13116 d3.select(params.root + ' .col_cat_container').attr('transform', 'translate(' + [zoom_info.trans_x, 0] + ') scale(' + zoom_info.zoom_x + ',1)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13118 d3.select(params.root + ' .col_dendro_container').attr('transform', 'translate(' + [zoom_info.trans_x, params.viz.uni_margin / 2] + ') scale(' + zoom_info.zoom_x + ',1)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13119
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13120 resize_label_val_bars(params, zoom_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13121
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13122 d3.select(params.root + ' .viz_svg').attr('is_zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13123 var inst_zoom = Number(d3.select(params.root + ' .viz_svg').attr('is_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13124 d3.select(params.root + ' .viz_svg').attr('stopped_zoom', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13125 return inst_zoom + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13126 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13128 // this function runs with a slight delay and tells the visualization that
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13129 // this particular zoom event is over, reducing the total number of zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13130 // events that need to finish
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13131 var not_zooming = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13132
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13133 d3.select(params.root + ' .viz_svg').attr('is_zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13134 var inst_zoom = Number(d3.select(params.root + ' .viz_svg').attr('is_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13135 return inst_zoom - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13136 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13137 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13138
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13139 constrain_font_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13140
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13141 if (zoom_info.zoom_y <= prev_zoom.zoom_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13143 var zooming_out = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13144 if (zoom_info.zoom_y < prev_zoom.zoom_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13145 zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13146 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13148 // zooming has not stopped and zooming out is true
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13149 var zooming_stopped = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13150 show_visible_area(cgm, zooming_stopped, zooming_out);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13151 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13153 setTimeout(not_zooming, 50);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13154 setTimeout(check_if_zooming_has_stopped, 100, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13156 function check_if_zooming_has_stopped(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13157 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13159 var stop_attributes = check_zoom_stop_status(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13161 if (stop_attributes === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13162 // wait and double check that zooming has stopped
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13163 setTimeout(run_when_zoom_stopped, 50, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13164 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13165 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13166 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13167
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13168 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13169 /* 127 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13170 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13172 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13174 module.exports = function resize_label_val_bars(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13176 var zoom_info = params.zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13178 // resize label bars if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13179 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13180 d3.selectAll(params.root + ' .row_bars').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13181 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13182 inst_value = params.labels.bar_scale_row(Math.abs(d.value)) / zoom_info.zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13183 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13184 }).attr('x', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13185 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13186 inst_value = -params.labels.bar_scale_row(Math.abs(d.value)) / zoom_info.zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13187 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13188 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13189 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13191 if (utils.has(params.network_data.col_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13192 d3.selectAll(params.root + ' .col_bars').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13193 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13194 if (d.value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13195 inst_value = params.labels.bar_scale_col(d.value) / zoom_info.zoom_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13196 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13197 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13198 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13199 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13200 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13202 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13203 /* 128 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13204 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13206 var constrain_font_size = __webpack_require__(119);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13207 var trim_text = __webpack_require__(118);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13208 var num_visible_labels = __webpack_require__(129);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13209 var toggle_grid_lines = __webpack_require__(121);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13210 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13211 var check_zoom_stop_status = __webpack_require__(130);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13213 module.exports = function run_when_zoom_stopped(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13214
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13215 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13217 var stop_attributes = check_zoom_stop_status(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13219 if (stop_attributes === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13221 // ///////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13222 // // zooming has stopped
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13223 // ///////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13224 // console.log('\nZOOMING HAS ACTUALLY STOPPED\n============================');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13225 // console.log(params.zoom_info.zoom_y)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13227 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13229 d3.selectAll(params.root + ' .' + inst_rc + '_label_group').select('text').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13231 d3.selectAll(params.root + ' .' + inst_rc + '_cat_group').select('path').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13232 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13234 show_visible_area(cgm, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13235
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13236 d3.selectAll(params.viz.root_tips).style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13238 d3.selectAll(params.root + ' .row_label_group').select('text').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13239 d3.selectAll(params.root + ' .row_label_group').select('text').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13241 d3.select(params.root + ' .viz_svg').attr('stopped_zoom', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13243 d3.selectAll(params.root + ' .row_label_group').select('text').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13244 d3.selectAll(params.root + ' .col_label_group').select('text').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13246 toggle_grid_lines(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13247
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13248 // reset x_offset
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13249 cgm.params.viz.x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13251 var max_labels_to_trim = 150;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13252 // probably do not need
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13253 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13254 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13255
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13256 var inst_num_visible = num_visible_labels(params, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13258 if (inst_num_visible < max_labels_to_trim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13259 d3.selectAll(params.root + ' .' + inst_rc + '_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13260 trim_text(params, this, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13261 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13262 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13263 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13265 text_patch();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13266
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13267 constrain_font_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13269 // this makes sure that the text is visible after zooming and trimming
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13270 // there is buggy behavior in chrome when zooming into large matrices
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13271 // I'm running it twice in quick succession
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13272 setTimeout(text_patch, 100);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13273 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13275 function text_patch() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13277 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13278
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13279 d3.selectAll(params.root + ' .' + inst_rc + '_label_group').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13280 return d3.select(this).style('display') != 'none';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13281 }).select('text').style('font-size', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13282 var inst_fs = Number(d3.select(this).style('font-size').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13283 return inst_fs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13284 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13285 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13286 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13287 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13289 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13290 /* 129 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13291 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13293 module.exports = function num_visible_labels(params, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13294
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13295 // counting the number of visible labels, probably not necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13296
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13297 var num_visible;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13298 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13299
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13300 // initialize at high number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13301 num_visible = 10000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13303 // only count visible rows if no downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13304 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13305 num_visible = d3.selectAll(params.root + ' .row')[0].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13306 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13307 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13308
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13309 num_visible = d3.selectAll(params.root + ' .' + inst_rc + '_label_text').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13310 return d3.select(this).style('display') != 'none';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13311 })[0].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13312 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13314 return num_visible;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13315 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13317 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13318 /* 130 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13319 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13320
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13321 module.exports = function check_zoom_stop_status(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13323 var inst_zoom = Number(d3.select(params.root + ' .viz_svg').attr('is_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13325 var check_stop = Number(d3.select(params.root + ' .viz_svg').attr('stopped_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13326
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13327 var stop_attributes = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13328 if (inst_zoom === 0 && check_stop != 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13329 stop_attributes = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13330 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13332 return stop_attributes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13333 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13335 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13336 /* 131 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13337 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13338
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13339 module.exports = function zoom_rules_y(params, zoom_info) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13341 var viz = params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13342 // zoom in the x direction before zooming in the y direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13343 if (viz.zoom_ratio.y > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13344 if (zoom_info.zoom_y < viz.zoom_ratio.y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13345 zoom_info.trans_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13346 zoom_info.zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13347 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13348 zoom_info.zoom_y = zoom_info.zoom_y / viz.zoom_ratio.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13349 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13350 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13352 // calculate panning room available in the y direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13353 zoom_info.pan_room_y = (zoom_info.zoom_y - 1) * viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13355 // console.log( 'pan_room_y: ' + String(zoom_info.pan_room_y) + ' ' + String(-zoom_info.trans_y))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13357 // no positive panning or panning more than pan_room
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13358 if (zoom_info.trans_y >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13359 zoom_info.trans_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13360 // console.log('y no positive panning\n\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13361 } else if (zoom_info.trans_y <= -zoom_info.pan_room_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13362 zoom_info.trans_y = -zoom_info.pan_room_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13363 // console.log('y restrict pan room \n\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13364 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13365
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13366 return zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13367 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13369 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13370 /* 132 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13371 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13373 module.exports = function zoom_rules_x(params, zoom_info) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13375 var viz = params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13376
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13377 // zoom in the y direction before zooming in the x direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13378 if (viz.zoom_ratio.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13380 if (zoom_info.zoom_x < viz.zoom_ratio.x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13381
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13382 // remove this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13383 // zoom_info.trans_x = - params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13385 zoom_info.zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13386 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13387 zoom_info.zoom_x = zoom_info.zoom_x / viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13389 // console.log('********* zoom_x: ' + String(zoom_info.zoom_x))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13390
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13391 // zoom_info.trans_x = zoom_info.trans_x + params.viz.x_offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13392 // zoom_info.trans_x = zoom_info.trans_x * (params.zoom_info.zoom_x/params.zoom_info.zoom_y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13393 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13394 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13396 // calculate panning room available in the x direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13397 zoom_info.pan_room_x = (zoom_info.zoom_x - 1) * viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13398
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13399 // console.log( 'pan_room_x: ' + String(zoom_info.pan_room_x) + ' trans_x: ' + String(-zoom_info.trans_x))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13400
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13401 // no positive panning or panning more than pan_room
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13402 if (zoom_info.trans_x > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13403 zoom_info.trans_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13404 // console.log('no positive panning\n\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13405 } else if (zoom_info.trans_x <= -zoom_info.pan_room_x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13406 zoom_info.trans_x = -zoom_info.pan_room_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13407 // console.log('******* restrict pan room\n\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13408 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13409
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13410 return zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13411 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13412
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13413 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13414 /* 133 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13415 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13416
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13417 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13418
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13419 module.exports = function ini_doubleclick(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13421 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13422 // disable double-click zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13423 d3.selectAll(params.viz.zoom_element).on('dblclick.zoom', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13425 d3.select(params.viz.zoom_element).on('dblclick', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13426 two_translate_zoom(cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13427 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13428 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13429
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13430 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13431 /* 134 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13432 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13434 module.exports = function (params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13436 // reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13437 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13438 var zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13439 // var zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13440 var pan_dx = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13441 var pan_dy = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13443 var half_height = params.viz.clust.dim.height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13444 var center_y = -(zoom_y - 1) * half_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13446 d3.select(params.root + ' .clust_group').attr('transform', 'translate(' + [0, 0 + center_y] + ')' + ' scale(' + 1 + ',' + zoom_y + ')' + 'translate(' + [pan_dx, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13448 d3.select(params.root + ' .row_label_zoom_container').attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + zoom_y + ',' + zoom_y + ')' + 'translate(' + [0, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13450 d3.select(params.root + ' .row_cat_container').attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + 1 + ',' + zoom_y + ')' + 'translate(' + [0, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13452 d3.select(params.root + ' .row_dendro_container').attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + zoom_y + ',' + zoom_y + ')' + 'translate(' + [params.viz.uni_margin / 2, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13454 d3.select(params.root + ' .col_zoom_container').attr('transform', ' scale(' + 1 + ',' + 1 + ')' + 'translate(' + [pan_dx, 0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13456 d3.select(params.root + ' .col_cat_container').attr('transform', ' scale(' + 1 + ',' + 1 + ')' + 'translate(' + [pan_dx, 0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13457
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13458 d3.select(params.root + ' .col_dendro_container').attr('transform', ' scale(' + 1 + ',' + 1 + ')' + 'translate(' + [pan_dx, params.viz.uni_margin / 2] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13460 // reset crop button zooming
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13461 d3.select(params.root + ' .row_dendro_icons_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13462 return 'translate(0,0) scale(1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13463 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13465 d3.select(params.root + ' .row_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13466 var inst_x = 7;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13467 var inst_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13468 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(1, 1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13469 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13470 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13471
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13472 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13473 /* 135 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13474 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13475
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13476 module.exports = function resize_dendro(params, svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13477
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13478 // resize dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13479 ///////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13481 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13483 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13484 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13485 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13486 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13487 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13489 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13490 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13491 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13492
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13493 var dendro_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13494 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13495
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13496 dendro_group = svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13497
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13498 svg_group.selectAll('.col_cat_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13499 // data binding needed for loss/gain of columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13500 .data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13501 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13502 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13503 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13504 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13505 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13507 svg_group.selectAll('.col_dendro_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13508 // data binding needed for loss/gain of columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13509 .data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13510 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13511 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13512 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13513 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13514 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13515 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13517 dendro_group = svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13519 svg_group.selectAll('.col_cat_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13520 // data binding needed for loss/gain of columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13521 .data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13522 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13523 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13524 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13525 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13526 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13527
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13528 d3.select(params.root).selectAll('.col_dendro_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13529 // data binding needed for loss/gain of columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13530 .data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13531 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13532 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13533 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13534 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13535 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13536 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13538 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13539 var inst_class;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13540
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13541 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13542
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13543 var num_cats = params.viz.all_cats[inst_rc].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13545 for (i = 0; i < num_cats; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13546 inst_class = '.' + inst_rc + '_cat_rect_' + String(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13547
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13548 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13549 dendro_group.selectAll(inst_class).attr('height', params.viz.y_scale.rangeBand());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13550 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13551 dendro_group.selectAll(inst_class).attr('width', params.viz.x_scale.rangeBand());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13552 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13553 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13554 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13556 // position row_dendro_outer_container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13557 var x_offset = params.viz.clust.margin.left + params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13558 var y_offset = params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13559 var spillover_width = params.viz.dendro_room.row + params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13560
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13561 d3.select(params.root + ' .viz_svg').select('row_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13562
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13563 d3.select(params.root + ' .row_dendro_outer_container').select('.row_dendro_spillover').attr('width', spillover_width + 'px').attr('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13564
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13565 x_offset = params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13566 y_offset = params.viz.clust.margin.top + params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13567 var spillover_height = params.viz.dendro_room.col + params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13569 d3.select(params.root + ' .col_dendro_outer_container').select('.col_dendro_spillover').attr('width', params.viz.svg_dim.width).attr('height', spillover_height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13570
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13571 d3.select(params.root + ' .col_dendro_outer_container').select('.col_dendro_spillover_top').attr('width', params.viz.svg_dim.width).attr('height', params.viz.svg_dim.height).attr('transform', 'translate(0,' + params.viz.dendro_room.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13572
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13573 x_offset = params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13574 y_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13575 d3.select(params.root + ' .col_dendro_icons_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13576 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13578 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13579 /* 136 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13580 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13581
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13582 module.exports = function resize_super_labels(params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13583
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13584 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13585 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13586 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13587
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13588 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13589 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13590 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13591 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13592 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13593
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13594 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13595 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13596 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13597 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13598 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13600 svg_group.select('.super_col_bkg').attr('height', params.viz.super_labels.dim.width + 'px').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.grey_border_width + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13601
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13602 // super col title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13603 svg_group.select('.super_col').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13604 var inst_x = params.viz.clust.dim.width / 2 + params.viz.norm_labels.width.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13605 var inst_y = params.viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13606 return 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13607 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13609 svg_group.select('.super_row_bkg').attr('width', params.viz.super_labels.dim.width + 'px').attr('transform', 'translate(' + params.viz.grey_border_width + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13611 svg_group.select('.super_row').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13612 var inst_x = params.viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13613 var inst_y = params.viz.clust.dim.height / 2 + params.viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13614 return 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13615 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13616 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13618 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13619 /* 137 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13620 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13622 module.exports = function resize_spillover(viz, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13624 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13625 var duration = viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13626 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13628 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13629 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13630 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13631 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13632 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13633
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13634 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13635 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13636 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13637 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13638 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13639
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13640 svg_group.select(viz.root + ' .right_slant_triangle').attr('transform', 'translate(' + viz.clust.dim.width + ',' + viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13642 svg_group.select(viz.root + ' .left_slant_triangle').attr('transform', 'translate(-1,' + viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13644 var rect_height = viz.clust.margin.top + viz.uni_margin / 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13645 svg_group.select(viz.root + ' .top_left_white').attr('width', viz.clust.margin.left).attr('height', rect_height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13646
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13647 var tmp_left = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin + viz.dendro_room.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13648 var tmp_top = viz.norm_labels.margin.top + viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13649
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13650 svg_group.select(viz.root + ' .right_spillover_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13651 return 'translate(' + tmp_left + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13652 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13654 tmp_top = viz.norm_labels.margin.top + viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13656 svg_group.select(viz.root + ' .right_spillover_container rect').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13657 return 'translate( 0,' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13658 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13660 svg_group.select(viz.root + ' .right_spillover').attr('height', viz.svg_dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13662 // resize dendro spillovers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13663 var x_offset = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13664 var y_offset = tmp_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13665 var tmp_width = viz.dendro_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13666 var tmp_height = viz.cat_room.col + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13667 d3.select(viz.root + ' .dendro_row_spillover').attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13668 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13669 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13670
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13671 // hide spillover left top of col dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13672 x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13673 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13674 tmp_width = viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13675 tmp_height = viz.clust.dim.height * 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13676
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13677 svg_group.select('.dendro_col_spillover').attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13678 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13679 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13681 x_offset = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13682 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13683 tmp_width = viz.cat_room.col + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13684 tmp_height = viz.cat_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13685
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13686 svg_group.select('.dendro_corner_spillover').attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13687 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13688 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13689
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13690 x_offset = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13691 y_offset = viz.norm_labels.margin.top + viz.norm_labels.width.col + 2.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13692 var extra_x_room = 2.75;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13693 var extra_y_room = 1.2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13695 // reposition category superlabels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13696 if (viz.show_categories.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13697
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13698 d3.selectAll(viz.root + ' .col_cat_super').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13699 var inst_cat = parseInt(d.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13700 var inst_y = y_offset + extra_y_room * viz.cat_room.symbol_width * inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13701 return 'translate(' + x_offset + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13702 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13703 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13705 if (viz.show_categories.row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13706 d3.select(viz.root + ' .row_cat_label_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13707 x_offset = viz.norm_labels.margin.left + viz.norm_labels.width.row + viz.cat_room.symbol_width + extra_x_room * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13708 y_offset = viz.clust.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13709 return 'translate(' + x_offset + ',' + y_offset + ') rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13710 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13711 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13712
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13713 // white border bottom - prevent clustergram from hitting border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13714 if (viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13715 y_offset = viz.clust.margin.top + viz.clust.dim.height + viz.dendro_room.col - 2 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13716 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13717 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13718 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13719
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13720 d3.select(viz.root + ' .bottom_spillover_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13721 // shift up enough to show the entire border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13722 return 'translate(0,' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13723 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13725 svg_group.select(viz.root + ' .bottom_spillover').attr('width', viz.svg_dim.width).attr('height', 2 * viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13727 var inst_height = viz.cat_room.col + 1.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13728 // white rect to cover excess labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13729 d3.select(viz.viz_svg + ' .top_right_white').attr('fill', viz.background_color).attr('width', 2 * viz.clust.dim.width).attr('height', inst_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13730 var tmp_left = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13731 var tmp_top = viz.norm_labels.width.col + viz.norm_labels.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13732 return 'translate(' + tmp_left + ', ' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13733 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13734 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13735
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13736 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13737 /* 138 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13738 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13739
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13740 module.exports = function resize_borders(params, svg_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13742 // left border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13743 svg_group.select('.left_border').attr('width', params.viz.grey_border_width).attr('height', params.viz.svg_dim.height).attr('transform', 'translate(0,0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13745 // right border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13746 svg_group.select('.right_border').attr('width', params.viz.grey_border_width).attr('height', params.viz.svg_dim.height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13747 var inst_offset = params.viz.svg_dim.width - params.viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13748 return 'translate(' + inst_offset + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13749 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13751 // top border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13752 svg_group.select('.top_border').attr('width', params.viz.svg_dim.width).attr('height', params.viz.grey_border_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13753 var inst_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13754 return 'translate(' + inst_offset + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13755 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13756
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13757 // bottom border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13758 svg_group.select('.bottom_border').attr('width', params.viz.svg_dim.width).attr('height', params.viz.grey_border_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13759 var inst_offset = params.viz.svg_dim.height - params.viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13760 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13761 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13762 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13764 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13765 /* 139 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13766 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13768 module.exports = function resize_row_labels(params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13770 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13771 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13772 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13774 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13775 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13776
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13777 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13778 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13779 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13780 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13781 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13783 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13785 ini_svg_group.selectAll('.row_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13786 // data bind necessary for loss/gain of rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13787 .data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13788 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13789 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13790 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13791 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13792 }).attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13794 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13795 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13797 ini_svg_group.selectAll('.row_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13798 // data bind necessary for loss/gain of rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13799 .data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13800 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13801 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13802 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13803 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13804 }).attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13806 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13807 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13808
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13809 svg_group.select(params.root + ' .row_container').attr('transform', 'translate(' + params.viz.norm_labels.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13811 svg_group.select(params.root + ' .row_container').select('.white_bars').attr('width', params.viz.label_background.row).attr('height', 30 * params.viz.clust.dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13813 svg_group.select(params.root + ' .row_container').select('.row_label_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13814 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13816 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13817 /* 140 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13818 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13820 module.exports = function resize_highlights(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13821
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13822 // reposition tile highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13823 ////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13824
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13825 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13826 // var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13827 var hlight_width = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13828 var hlight_height = rel_width_hlight * params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13830 // top highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13831 d3.select(params.root + ' .top_hlight').attr('width', params.viz.rect_width).attr('height', hlight_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13832 return 'translate(' + params.viz.x_scale(params.matrix.click_hlight_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13833 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13835 // left highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13836 d3.select(params.root + ' .left_hlight').attr('width', hlight_width).attr('height', params.viz.rect_width - hlight_height * 0.99).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13837 return 'translate(' + params.viz.x_scale(params.matrix.click_hlight_x) + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13838 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13839
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13840 // right highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13841 d3.select(params.root + ' .right_hlight').attr('width', hlight_width).attr('height', params.viz.rect_height - hlight_height * 0.99).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13842 var tmp_translate = params.viz.x_scale(params.matrix.click_hlight_x) + params.viz.rect_width - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13843 return 'translate(' + tmp_translate + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13844 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13846 // bottom highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13847 d3.select(params.root + ' .bottom_hlight').attr('width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13848 return params.viz.rect_width - 1.98 * hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13849 }).attr('height', hlight_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13850 var tmp_translate_x = params.viz.x_scale(params.matrix.click_hlight_x) + hlight_width * 0.99;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13851 var tmp_translate_y = params.viz.rect_height - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13852 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13853 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13855 // resize row highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13856 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13857 d3.select(params.root + ' .row_top_hlight').attr('width', params.viz.svg_dim.width).attr('height', hlight_height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13859 d3.select(params.root + ' .row_bottom_hlight').attr('width', params.viz.svg_dim.width).attr('height', hlight_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13860 var tmp_translate_y = params.viz.rect_height - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13861 return 'translate(0,' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13862 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13863
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13864 // resize col highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13865 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13866 d3.select(params.root + ' .col_top_hlight').attr('width', params.viz.clust.dim.height).attr('height', hlight_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13867 var tmp_translate_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13868 var tmp_translate_x = -(params.viz.clust.dim.height + params.viz.cat_room.col + params.viz.uni_margin);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13869 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13870 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13872 d3.select(params.root + ' .col_bottom_hlight').attr('width', params.viz.clust.dim.height).attr('height', hlight_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13873 var tmp_translate_y = params.viz.rect_width - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13874 var tmp_translate_x = -(params.viz.clust.dim.height + params.viz.cat_room.col + params.viz.uni_margin);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13875 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13876 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13877 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13879 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13880 /* 141 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13881 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13883 module.exports = function resize_row_viz(params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13885 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13886 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13887 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13889 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13890 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13891 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13892 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13893 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13895 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13896 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13897 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13898 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13899 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13900
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13901 svg_group.select('.row_cat_outer_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)').select('white_bars').attr('width', params.viz.cat_room.row + 'px').attr('height', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13902 var inst_height = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13903 return inst_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13904 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13906 var x_offset = params.viz.clust.margin.left + params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13907 var y_offset = params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13908 svg_group.select('.row_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13910 // !! tmp resize col dendro
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13911 x_offset = params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13912 y_offset = params.viz.clust.margin.top + params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13914 svg_group.select(' .col_dendro_outer_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13915 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13916 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13917 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13919 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13920 /* 142 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13921 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13922
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13923 module.exports = function (params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13925 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13926 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13927 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13929 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13930 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13932 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13933 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13934 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13935 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13936 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13938 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13939 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13941 ini_svg_group.selectAll('.col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13942 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13943 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13944 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13945 return 'translate(' + params.viz.x_scale(inst_index) + ', 0) rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13946 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13947 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13948 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13949
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13950 ini_svg_group.selectAll('.col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13951 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13952 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13953 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13954 return 'translate(' + params.viz.x_scale(inst_index) + ', 0) rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13955 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13956 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13958 // offset click group column label
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13959 var x_offset_click = params.viz.x_scale.rangeBand() / 2 + params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13961 svg_group.select(params.root + ' .col_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.norm_labels.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13962
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13963 svg_group.select(params.root + ' .col_container').select('.white_bars').attr('width', 30 * params.viz.clust.dim.width + 'px').attr('height', params.viz.label_background.col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13965 svg_group.select(params.root + ' .col_container').select('.col_label_outer_container').attr('transform', 'translate(0,' + params.viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13967 svg_group.selectAll('.col_label_group').attr('transform', 'translate(' + params.viz.x_scale.rangeBand() / 2 + ',' + x_offset_click + ') rotate(45)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13968
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13969 svg_group.selectAll('.col_label_group').select('text').attr('y', params.viz.x_scale.rangeBand() * 0.60).attr('dx', 2 * params.viz.border_width.x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13970 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13972 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13973 /* 143 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13974 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13975
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13976 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13978 module.exports = function resize_col_text(params, svg_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13979 svg_group.selectAll('.col_label_group').select('text').style('font-size', params.labels.default_fs_col + 'px').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13980 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13981 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13983 svg_group.selectAll('.col_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13984 d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13985 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13986 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13988 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13989 /* 144 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13990 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13992 var col_viz_aid_triangle = __webpack_require__(110);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13994 module.exports = function resize_col_triangle(params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13996 // resize column triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13997 var ini_triangle_group = ini_svg_group.selectAll('.col_label_group').select('path');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
13999 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14000 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14001
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14002 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14003 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14004 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14005 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14006 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14007
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14008 var triangle_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14009 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14010 triangle_group = ini_triangle_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14011 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14012 triangle_group = ini_triangle_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14013 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14014
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14015 triangle_group.attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14016 return col_viz_aid_triangle(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14017 }).attr('fill', '#eee');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14018 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14020 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14021 /* 145 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14022 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14024 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14026 module.exports = function resize_col_hlight(params, svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14027
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14028 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14029 // var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14031 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14032 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14033 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14034 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14035 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14036
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14037 if (utils.has(params.network_data.col_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14038
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14039 svg_group.selectAll('.col_bars').data(params.network_data.col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14040 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14041 }).attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14043 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14045 if (d.value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14046 inst_value = params.labels.bar_scale_col(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14047 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14048 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14049 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14050 // rotate labels - reduce width if rotating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14051 .attr('height', params.viz.rect_width * 0.66);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14052 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14053 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14054
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14055 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14056 /* 146 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14057 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14058
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14059 var get_svg_dim = __webpack_require__(19);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14060 var calc_clust_height = __webpack_require__(22);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14061 var calc_clust_width = __webpack_require__(21);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14062 var calc_default_fs = __webpack_require__(31);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14063 var calc_zoom_switching = __webpack_require__(30);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14065 module.exports = function recalc_params_for_resize(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14067 // Resetting some visualization parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14068 params = get_svg_dim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14069 params.viz = calc_clust_width(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14070 params.viz = calc_clust_height(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14072 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14073 if (params.viz.clust.dim.width <= params.viz.clust.dim.height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14074 params.viz.clust.dim.height = params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14075 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14076 params.viz.clust.dim.width = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14077 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14078 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14079
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14080 params.viz = calc_zoom_switching(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14081
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14082 // redefine x_scale and y_scale rangeBands
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14083 params.viz.x_scale.rangeBands([0, params.viz.clust.dim.width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14084 params.viz.y_scale.rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14085
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14086 // redefine border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14087 params.viz.border_width.x = params.viz.x_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14088 params.viz.border_width.y = params.viz.y_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14089
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14090 params.viz.rect_width = params.viz.x_scale.rangeBand() - params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14091 params.viz.rect_height = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14092
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14093 // for downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14094 if (params.viz.ds != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14095 for (var i; i < params.viz.ds.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14096 params.viz.ds[i].rect_height = params.viz.ds[i].y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14097 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14098 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14100 // recalc downsampled y_scale if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14101 if (params.viz.ds_num_levels > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14102 _.each(params.viz.ds, function (inst_ds) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14103
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14104 // y_scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14105 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14106 inst_ds.y_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14107 inst_ds.y_scale.domain(d3.range(inst_ds.num_rows + 1));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14108
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14109 inst_ds.rect_height = inst_ds.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14110 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14111 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14113 // redefine zoom extent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14114 params.viz.square_zoom = params.viz.norm_labels.width.col / (params.viz.rect_width / 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14115
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14116 // the default font sizes are set here
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14117 params = calc_default_fs(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14119 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14120 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14121
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14122 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14123 /* 147 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14124 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14125
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14126 var draw_up_tile = __webpack_require__(43);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14127 var draw_dn_tile = __webpack_require__(44);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14128 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14130 module.exports = function resize_row_tiles(params, svg_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14131
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14132 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14134 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14135
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14136 // no downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14137 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14138
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14139 // resize rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14140 svg_group.selectAll('.row').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14141 var tmp_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14142 var inst_y = params.viz.y_scale(tmp_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14143 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14144 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14146 // resize tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14147 svg_group.selectAll('.row').selectAll('.tile').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14148 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14149 }).attr('width', params.viz.rect_width).attr('height', params.viz.rect_height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14150
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14151 // resize tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14152 svg_group.selectAll('.row').selectAll('.tile_up').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14153 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14154 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14155 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14156 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14157
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14158 // resize tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14159 svg_group.selectAll('.row').selectAll('.tile_dn').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14160 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14161 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14162 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14163 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14164 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14165
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14166 // downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14167 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14168
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14169 var ds_level = params.viz.ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14170 var row_class = '.ds' + String(ds_level) + '_row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14171 var ds_rect_height = params.viz.ds[ds_level].rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14173 svg_group.selectAll(row_class).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14174 var inst_y = params.viz.ds[ds_level].y_scale(d.row_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14175 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14176 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14178 // reset ds-tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14179 svg_group.selectAll(row_class).selectAll('.tile').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14180 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14181 }).attr('width', params.viz.rect_width).attr('height', ds_rect_height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14182 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14183 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14184
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14185 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14186 /* 148 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14187 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14188
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14189 var calc_val_max = __webpack_require__(23);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14191 module.exports = function resize_label_bars(cgm, svg_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14192 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14193
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14194 // // set bar scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14195 // var val_max = Math.abs(_.max( params.network_data.row_nodes, function(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14196 // return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14197 // } ).value) ;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14199 // params.labels.bar_scale_row = d3.scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14200 // .linear()
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14201 // .domain([0, val_max])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14202 // .range([0, params.viz.norm_labels.width.row ]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14204 params = calc_val_max(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14206 svg_group.selectAll('.row_bars')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14207 // .transition().delay(delays.update).duration(duration)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14208 .attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14209 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14210 inst_value = params.labels.bar_scale_row(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14211 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14212 }).attr('x', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14213 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14214 inst_value = -params.labels.bar_scale_row(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14215 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14216 }).attr('height', params.viz.y_scale.rangeBand());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14217 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14219 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14220 /* 149 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14221 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14223 module.exports = function position_play_button(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14225 var clust_transform = d3.select(params.root + ' .clust_container').attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14227 var clust_x = Number(clust_transform.split('(')[1].split(',')[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14228 var clust_y = Number(clust_transform.split(',')[1].replace(')', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14229 var trans_x = clust_x + params.viz.clust.dim.width / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14230 var trans_y = clust_y + params.viz.clust.dim.height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14231
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14232 d3.select(params.root + ' .play_button').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14233 return 'translate(' + trans_x + ',' + trans_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14234 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14235 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14237 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14238 /* 150 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14239 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14241 module.exports = function position_svg_dendro_slider(cgm, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14243 var viz = cgm.params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14244 var tmp_left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14245 var tmp_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14246 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14247
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14248 // row dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14249 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14251 // keep slider near clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14252 var max_room = viz.svg_dim.width - 3 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14254 // position close to row dendrogram trapezoids
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14255 tmp_left = viz.clust.margin.left + viz.clust.dim.width + 5 * viz.dendro_room.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14257 if (tmp_left > max_room) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14258 tmp_left = max_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14259 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14261 tmp_top = viz.clust.margin.top + 3 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14262 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14263
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14264 // column dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14265 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14266 tmp_left = 2 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14267 // tmp_top = viz.svg_dim.height - 2.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14268 tmp_top = viz.clust.margin.top + viz.clust.dim.height + viz.dendro_room.col - 2 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14269 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14271 d3.select(cgm.params.root + ' .' + inst_rc + '_slider_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14272 var inst_translation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14273 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14274 inst_translation = 'translate(' + tmp_left + ',' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14275 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14276 inst_translation = 'translate(' + tmp_left + ',' + tmp_top + '), rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14277 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14278 return inst_translation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14279 }).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14280 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14281
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14282 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14283 /* 151 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14284 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14285
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14286 module.exports = function grid_lines_viz(params, duration = 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14288 var delay = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14289 if (duration > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14290 delay = 2000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14291 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14293 var horz_lines = d3.selectAll(params.root + ' .horz_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14294 var vert_lines = d3.selectAll(params.root + ' .vert_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14296 horz_lines.style('opacity', 0).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14297 var inst_index = d.row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14298 var inst_trans = params.viz.y_scale(inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14299 return 'translate( 0,' + inst_trans + ') rotate(0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14300 }).transition().duration(duration).delay(delay).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14302 horz_lines.append('line').attr('x1', 0).attr('x2', params.viz.clust.dim.width).style('stroke-width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14303 var inst_width = params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14304 return inst_width + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14305 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14306
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14307 vert_lines.style('opacity', 0).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14308 var inst_index = d.col_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14309 var inst_trans = params.viz.x_scale(inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14310 return 'translate(' + inst_trans + ') rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14311 }).transition().duration(duration).delay(delay).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14312
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14313 vert_lines.append('line').attr('x1', 0).attr('x2', -params.viz.clust.dim.height).style('stroke-width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14314 var inst_width = params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14315 return inst_width + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14316 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14317 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14319 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14320 /* 152 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14321 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14323 var cat_tooltip_text = __webpack_require__(153);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14324 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14325 var reset_cat_opacity = __webpack_require__(154);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14326 var ini_cat_opacity = __webpack_require__(155);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14327 var click_filter_cats = __webpack_require__(156);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14328 var get_cat_names = __webpack_require__(157);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14329
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14330 module.exports = function make_col_cat(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14332 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14333
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14334 // make or reuse outer container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14335 if (d3.select(params.root + ' .col_cat_outer_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14336 d3.select(params.root + ' .col_container').append('g').attr('class', 'col_cat_outer_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14337 var inst_offset = params.viz.norm_labels.width.col + 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14338 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14339 }).append('g').attr('class', 'col_cat_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14340 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14341 d3.select(params.root + ' .col_container').select('col_cat_outer_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14342 var inst_offset = params.viz.norm_labels.width.col + 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14343 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14344 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14345 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14347 // remove old col_cat_tips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14348 d3.selectAll(params.viz.root_tips + '_col_cat_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14350 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14351 var cat_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14352 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14353 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_col_cat_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14354 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14355 }).direction('s').offset([5, 0]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14356 return cat_tooltip_text(params, d, this, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14357 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14359 // append groups - each will hold classification rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14360 d3.select(params.root + ' .col_cat_container').selectAll('g').data(params.network_data.col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14361 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14362 }).enter().append('g').attr('class', 'col_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14363 var inst_index = _.indexOf(params.network_data.col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14364 // return 'translate(' + params.viz.x_scale(d.col_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14365 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14366 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14368 d3.select(params.root + ' .col_cat_container').selectAll('.col_cat_group').call(cat_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14370 // add category rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14371 d3.selectAll(params.root + ' .col_cat_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14373 var inst_selection = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14374 var cat_rect;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14375
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14376 _.each(params.viz.all_cats.col, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14377
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14378 var inst_num = parseInt(inst_cat.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14379 var cat_rect_class = 'col_cat_rect_' + String(inst_num);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14380
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14381 if (d3.select(inst_selection).select('.' + cat_rect_class).empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14382 cat_rect = d3.select(inst_selection).append('rect').attr('class', cat_rect_class).attr('cat', inst_cat).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14383 var cat_room = params.viz.cat_room.symbol_width + params.viz.cat_room.separation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14384 var inst_shift = inst_num * cat_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14385 return 'translate(0,' + inst_shift + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14386 }).on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14388 if (d3.select(this).classed('cat_strings')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14389
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14390 if (d3.event.shiftKey === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14391 click_filter_cats_db(cgm, d, this, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14392 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14393
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14394 var found_names = get_cat_names(params, d, this, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14396 $(params.root + ' .dendro_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14397 var group_string = found_names.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14398 d3.select(params.root + ' .dendro_info input').attr('value', group_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14399 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14400 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14401 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14402 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14403 cat_rect = d3.select(inst_selection).select('.' + cat_rect_class);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14404 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14405
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14406 cat_rect.attr('width', params.viz.x_scale.rangeBand()).attr('height', params.viz.cat_room.symbol_width).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14407 var cat_name = d[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14408 var inst_color = params.viz.cat_colors.col[inst_cat][cat_name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14409 return inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14410 }).on('mouseover', cat_tip.show).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14411 cat_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14412 reset_cat_opacity(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14413 d3.select(this).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14414
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14415 d3.selectAll('.d3-tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14416 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14418 ini_cat_opacity(params.viz, 'col', cat_rect, inst_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14419 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14420 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14421
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14422 var click_filter_cats_db = _.debounce(click_filter_cats, 1500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14423 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14425 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14426 /* 153 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14427 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14428
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14429 var get_cat_title = __webpack_require__(113);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14431 module.exports = function cat_tooltip_text(params, inst_data, inst_selection, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14432
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14433 d3.selectAll(params.viz.root_tips + '_col_cat_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14435 d3.selectAll(params.viz.root_tips + '_row_cat_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14436
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14437 // category index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14438 var inst_cat = d3.select(inst_selection).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14439 var cat_title = get_cat_title(params.viz, inst_cat, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14440 var cat_name = inst_data[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14442 if (typeof cat_name === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14443 if (cat_name.indexOf(': ') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14444 cat_name = cat_name.split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14445 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14446 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14448 var cat_string = cat_title + ': ' + cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14450 d3.select(inst_selection).classed('hovering', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14452 setTimeout(highlight_categories, 500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14454 return cat_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14456 function highlight_categories() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14457
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14458 var run_highlighting = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14460 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14461
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14462 var node_types = [inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14463
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14464 if (params.viz.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14465 node_types = ['row', 'col'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14466 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14468 _.each(node_types, function (tmp_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14469
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14470 // only highlight string categories that are not 'false' categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14471 if (typeof cat_name === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14472 if (cat_name.indexOf('Not ') < 0 && cat_name != 'false') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14473 run_highlighting = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14474 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14475 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14477 if (run_highlighting) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14478
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14479 d3.selectAll(params.root + ' .' + tmp_rc + '_cat_group').selectAll('rect').style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14481 var inst_opacity = d3.select(this).style('opacity');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14483 if (d3.select(this).classed('cat_strings') && d3.select(this).classed('filtered_cat') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14484
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14485 var tmp_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14486 var tmp_cat = d3.select(this).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14487
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14488 if (d[tmp_cat].indexOf(': ') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14489 tmp_name = d[tmp_cat].split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14490 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14491 tmp_name = d[tmp_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14492 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14494 if (tmp_cat === inst_cat && tmp_name === cat_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14495 inst_opacity = params.viz.cat_colors.active_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14496 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14497 inst_opacity = params.viz.cat_colors.opacity / 4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14498 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14499 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14501 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14502 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14503 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14504 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14505 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14506 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14507 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14509 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14510 /* 154 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14511 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14513 module.exports = function reset_cat_opacity(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14515 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14517 d3.selectAll(params.root + ' .' + inst_rc + '_cat_group').selectAll('rect').style('opacity', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14519 var inst_opacity = d3.select(this).style('opacity');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14521 if (d3.select(this).classed('cat_strings') && d3.select(this).classed('filtered_cat') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14522 inst_opacity = params.viz.cat_colors.opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14523 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14525 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14526 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14527 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14528 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14529
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14530 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14531 /* 155 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14532 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14533
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14534 module.exports = function ini_cat_opacity(viz, inst_rc, cat_rect, inst_cat, updating = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14536 // debugger;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14538 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14539 var inst_type = viz.cat_info[inst_rc][inst_cat].type;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14540
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14541 // set opacity based on string or value cats
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14542 if (inst_type === 'cat_strings') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14544 // optionally have categories transition in
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14545 if (updating) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14546 cat_rect.classed('cat_strings', true).style('opacity', 0).transition().duration(1000).style('opacity', viz.cat_colors.opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14547 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14548 // opacity is fixed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14549 cat_rect.classed('cat_strings', true).style('opacity', viz.cat_colors.opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14550 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14551 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14552
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14553 // opacity varies based on value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14554 cat_rect.classed('cat_values', true).style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14556 var unprocessed_val = d[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14557
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14558 var cat_value = get_cat_value(unprocessed_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14559
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14560 return viz.cat_info[inst_rc][inst_cat].cat_scale(Math.abs(cat_value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14561 }).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14562 var inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14564 var cat_value = get_cat_value(d[inst_cat]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14565
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14566 // get positive and negative colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14567 if (cat_value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14568 inst_color = viz.cat_value_colors[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14569 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14570 inst_color = viz.cat_value_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14571 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14572
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14573 return inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14574 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14575 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14576
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14577 function get_cat_value(unprocessed_value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14578 if (typeof unprocessed_value === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14579
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14580 if (unprocessed_value.indexOf(super_string) > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14581 unprocessed_value = unprocessed_value.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14582 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14583 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14585 var cat_value = parseFloat(unprocessed_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14587 return cat_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14589 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14590
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14591 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14592 /* 156 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14593 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14594
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14595 var get_cat_names = __webpack_require__(157);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14596
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14597 module.exports = function click_filter_cats(cgm, inst_data, inst_selection, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14598
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14599 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14600
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14601 var inst_cat = d3.select(inst_selection).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14602 var cat_name = inst_data[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14603
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14604 var found_names = get_cat_names(params, inst_data, inst_selection, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14606 var switch_rc = { 'row': 'col', 'col': 'row' };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14607 var other_rc = switch_rc[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14609 var filter_names = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14610 filter_names[inst_rc] = found_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14611
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14612 if (cgm.params.cat_filter[inst_rc] === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14614 if (cgm.params.dendro_filter.row === false && cgm.params.dendro_filter.col === false && cgm.params.cat_filter[other_rc] === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14616 var tmp_names = cgm.params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14618 // keep a backup of the inst_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14619 var inst_row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14620 var inst_col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14622 // run filtering using found names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14623 cgm.filter_viz_using_names(filter_names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14625 // overwrite with backup of original nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14626 cgm.params.inst_nodes.row_nodes = inst_row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14627 cgm.params.inst_nodes.col_nodes = inst_col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14628
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14629 // must set this after filtering has been run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14630 cgm.params.cat_filter[inst_rc] = tmp_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14631
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14632 highlight_filtered_cat(inst_rc, inst_cat, cat_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14633 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14634 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14636 // get backup of names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14637 filter_names = cgm.params.cat_filter[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14639 // reset filter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14640 cgm.filter_viz_using_names(filter_names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14641 // must set this after filtering has been run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14642 cgm.params.cat_filter[inst_rc] = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14644 // there are no filtered cats
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14645 d3.selectAll(params.root + ' .' + inst_rc + '_cat_group').selectAll('rect').classed('filtered_cat', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14646 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14647
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14648 function highlight_filtered_cat(inst_rc, inst_cat, cat_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14649
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14650 d3.selectAll(params.root + ' .' + inst_rc + '_cat_group').selectAll('rect').style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14652 var inst_opacity = d3.select(this).style('opacity');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14654 if (d3.select(this).classed('cat_strings')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14656 var tmp_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14657 var tmp_cat = d3.select(this).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14658
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14659 // no need to filter out title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14660 tmp_name = d[tmp_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14662 if (tmp_cat === inst_cat && tmp_name === cat_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14663 inst_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14665 d3.select(this).classed('filtered_cat', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14666 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14667 // else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14668 // inst_opacity = params.viz.cat_colors.opacity/4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14669 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14670 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14671
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14672 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14673 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14674 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14675 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14676
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14677 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14678 /* 157 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14679 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14681 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14683 module.exports = function get_cat_names(params, inst_data, inst_selection, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14685 // category index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14686 var inst_cat = d3.select(inst_selection).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14687 var cat_name = inst_data[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14688 var tmp_nodes = params.network_data[inst_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14689
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14690 var found_nodes = _.filter(tmp_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14691 return d[inst_cat] == cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14692 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14693
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14694 var found_names = utils.pluck(found_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14695
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14696 return found_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14697 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14698
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14699 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14700 /* 158 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14701 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14702
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14703 var cat_tooltip_text = __webpack_require__(153);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14704 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14705 var reset_cat_opacity = __webpack_require__(154);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14706 var ini_cat_opacity = __webpack_require__(155);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14707 var click_filter_cats = __webpack_require__(156);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14708 var get_cat_names = __webpack_require__(157);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14709
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14710 module.exports = function make_row_cat(cgm, updating = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14712 // console.log('make_row_cat')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14714 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14716 // make or reuse outer container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14717 if (d3.select(params.root + ' .row_cat_outer_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14718 d3.select(params.root + ' .row_container').append('g').attr('class', 'row_cat_outer_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)').append('g').attr('class', 'row_cat_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14719 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14720 d3.select(params.root + ' .row_container').select('row_cat_outer_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14721 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14723 // white background
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14724 if (d3.select(params.root + ' .row_cat_container').select('.white_bars').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14725 d3.select(params.root + ' .row_cat_container').append('rect').attr('class', 'white_bars').attr('fill', params.viz.background_color).attr('width', params.viz.cat_room.row + 'px').attr('height', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14726 var inst_height = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14727 return inst_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14728 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14729 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14730 d3.select(params.root + ' .row_cat_container').select('.white_bars').attr('fill', params.viz.background_color).attr('width', params.viz.cat_room.row + 'px').attr('height', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14731 var inst_height = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14732 return inst_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14733 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14734 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14735
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14736 // remove old col_cat_tips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14737 d3.selectAll(params.viz.root_tips + '_row_cat_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14739 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14740 var cat_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14741 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14742 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_row_cat_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14743 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14744 }).direction('e').offset([5, 0]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14745 return cat_tooltip_text(params, d, this, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14746 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14747
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14748 // groups that hold classification triangle and colorbar rect
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14749 d3.select(params.root + ' .row_cat_container').selectAll('g').data(params.network_data.row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14750 // console.log('-------------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14751 // console.log(d['cat-0'])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14752 // console.log('-------------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14753 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14754 }).enter().append('g').attr('class', 'row_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14755 var inst_index = _.indexOf(params.network_data.row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14756 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14757 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14759 d3.select(params.root + ' .row_cat_container').selectAll('.row_cat_group').call(cat_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14760
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14761 // add row visual-aid triangles (if no downsampling)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14762 // if (params.viz.ds_level === -1){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14763 // d3.selectAll(params.root+' .row_cat_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14764 // .append('path')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14765 // .attr('d', function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14766 // var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14767 // var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14768 // var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14769 // var mid_y = params.viz.y_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14770 // var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14771 // var final_y = params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14772 // var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' +
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14773 // mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14774 // return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14775 // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14776 // .attr('fill', '#eee')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14777 // .style('opacity', params.viz.triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14778 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14780 var cat_rect;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14781 var inst_selection;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14783 d3.selectAll(params.root + ' .row_cat_group rect').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14785 if (params.viz.show_categories.row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14786
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14787 d3.selectAll(params.root + ' .row_cat_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14789 inst_selection = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14790
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14791 _.each(params.viz.all_cats.row, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14792
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14793 var inst_num = parseInt(inst_cat.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14794 var cat_rect_class = 'row_cat_rect_' + String(inst_num);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14795
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14796 if (d3.select(inst_selection).select('.' + cat_rect_class).empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14797 cat_rect = d3.select(inst_selection).append('rect').attr('class', cat_rect_class).attr('cat', inst_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14798 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14799 cat_rect = d3.select(inst_selection).select('.' + cat_rect_class);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14800 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14802 cat_rect.attr('width', params.viz.cat_room.symbol_width).attr('height', params.viz.y_scale.rangeBand()).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14803 var cat_name = d[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14804
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14805 // if (cat_name.indexOf(': ') >= 0){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14806 // cat_name = cat_name.split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14807 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14808
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14809 // console.log(cat_name)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14811 var inst_color = params.viz.cat_colors.row[inst_cat][cat_name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14813 // console.log('inst_color: ' + String(inst_color));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14814 return inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14815 }).attr('x', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14816 var inst_offset = params.viz.cat_room.symbol_width + params.viz.uni_margin / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14817 return inst_offset + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14818 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14819 var cat_room = params.viz.cat_room.symbol_width + params.viz.cat_room.separation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14820 var inst_shift = inst_num * cat_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14821 return 'translate(' + inst_shift + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14822 }).on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14824 if (d3.select(this).classed('cat_strings')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14826 if (d3.event.shiftKey === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14827 click_filter_cats_db(cgm, d, this, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14828 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14830 var found_names = get_cat_names(params, d, this, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14831
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14832 $(params.root + ' .dendro_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14833 var group_string = found_names.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14834 d3.select(params.root + ' .dendro_info input').attr('value', group_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14835 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14836 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14837 }).on('mouseover', cat_tip.show).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14838 cat_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14839 reset_cat_opacity(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14840 d3.select(this).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14841
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14842 d3.selectAll('.d3-tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14843 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14845 ini_cat_opacity(params.viz, 'row', cat_rect, inst_cat, updating);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14846 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14847 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14848 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14850 var click_filter_cats_db = _.debounce(click_filter_cats, 1500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14851 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14853 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14854 /* 159 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14855 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14856
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14857 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14859 module.exports = function make_row_dendro(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14860
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14861 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14862
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14863 var spillover_width = params.viz.dendro_room.row + params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14865 // position row_dendro_outer_container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14866 var x_offset = params.viz.clust.margin.left + params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14867 var y_offset = params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14868
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14869 // make or reuse outer container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14870 if (d3.select(params.root + ' .row_dendro_outer_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14872 d3.select(params.root + ' .viz_svg').append('g').attr('class', 'row_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14874 d3.select(params.root + ' .row_dendro_outer_container').append('rect').classed('row_dendro_spillover', true).attr('fill', params.viz.background_color).attr('width', spillover_width + 'px').attr('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14876 d3.select(params.root + ' .row_dendro_outer_container').append('g').attr('class', 'row_dendro_container').attr('transform', 'translate(' + params.viz.uni_margin / 2 + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14877 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14878 d3.select(params.root + ' .viz_svg').select('row_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14880 d3.select(params.root + ' .row_dendro_outer_container').select('.row_dendro_spillover').attr('width', spillover_width + 'px').attr('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14881 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14883 make_dendro_triangles(cgm, 'row', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14885 if (params.viz.inst_order.col != 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14886 d3.selectAll(params.root + ' .row_dendro_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14887 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14888 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14889
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14890 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14891 /* 160 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14892 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14894 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14895
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14896 module.exports = function make_col_dendro(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14897
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14898 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14899
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14900 // position col_dendro_outer_container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14901 var x_offset = params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14902 var y_offset = params.viz.clust.margin.top + params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14903 var spillover_height = params.viz.dendro_room.col + params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14904
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14905 // make or reuse outer container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14906 if (d3.select(params.root + ' .col_dendro_outer_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14907
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14908 d3.select(params.root + ' .viz_svg').append('g').attr('class', 'col_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14910 d3.select(params.root + ' .col_dendro_outer_container').append('rect').classed('col_dendro_spillover', true).attr('fill', params.viz.background_color).attr('width', params.viz.svg_dim.width).attr('height', spillover_height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14912 d3.select(params.root + ' .col_dendro_outer_container').append('g').attr('class', 'col_dendro_container').attr('transform', 'translate(0,' + params.viz.uni_margin / 2 + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14914 d3.select(params.root + ' .col_dendro_outer_container').append('rect').classed('col_dendro_spillover_top', true).attr('fill', params.viz.background_color).attr('width', params.viz.svg_dim.width).attr('height', params.viz.svg_dim.height).attr('transform', 'translate(0,' + params.viz.dendro_room.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14915 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14916
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14917 d3.select(params.root + ' .viz_svg').select('col_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14919 d3.select(params.root + ' .col_dendro_outer_container').select('.col_dendro_spillover').attr('width', params.viz.svg_dim.width).attr('height', spillover_height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14920 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14922 make_dendro_triangles(cgm, 'col', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14924 if (params.viz.inst_order.row != 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14925 d3.selectAll(params.root + ' .col_dendro_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14926 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14927 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14929 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14930 /* 161 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14931 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14932
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14933 var build_svg_dendro_slider = __webpack_require__(162);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14935 module.exports = function make_svg_dendro_sliders(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14936
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14937 build_svg_dendro_slider(cgm, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14938 build_svg_dendro_slider(cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14939 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14941 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14942 /* 162 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14943 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14944
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14945 var change_groups = __webpack_require__(163);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14946 var position_svg_dendro_slider = __webpack_require__(150);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14948 module.exports = function build_svg_dendro_slider(cgm, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14949
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14950 var slider_length = 100;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14951
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14952 var drag = d3.behavior.drag().on("drag", dragging).on('dragend', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14953 cgm.params.is_slider_drag = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14954 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14955
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14956 var slider_group = d3.select(cgm.params.root + ' .viz_svg').append('g').classed(inst_rc + '_slider_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14958 position_svg_dendro_slider(cgm, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14959
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14960 var rect_height = slider_length + 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14961 var rect_width = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14962 slider_group.append('rect').classed(inst_rc + '_slider_background', true).attr('height', rect_height + 'px').attr('width', rect_width + 'px').attr('fill', cgm.params.viz.background_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14963 var translate_string = 'translate(-10, -5)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14964 return translate_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14965 }).style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14967 slider_group.append("line").style('stroke-width', slider_length / 7 + 'px').style('stroke', 'black').style('stroke-linecap', 'round').style('opacity', 0.0).attr("y1", 0).attr("y2", function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14968 return slider_length - 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14969 }).on('click', click_dendro_slider);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14970
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14971 var offset_triangle = -slider_length / 40;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14972 slider_group.append('path').style('fill', 'black').attr('transform', 'translate(' + offset_triangle + ', 0)').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14973
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14974 // up triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14975 var start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14976 var start_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14978 var mid_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14979 var mid_y = slider_length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14981 var final_x = slider_length / 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14982 var final_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14984 var output_string = 'M' + start_x + ',' + start_y + ', L' + mid_x + ', ' + mid_y + ', L' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14985
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14986 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14987 }).style('opacity', 0.35).on('click', click_dendro_slider);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14988
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14989 var default_opacity = 0.35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14990 var high_opacity = 0.6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14991 slider_group.append('circle').classed(inst_rc + '_group_circle', true).attr('r', slider_length * 0.08).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14992 return 'translate(0, ' + slider_length / 2 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14993 }).style('fill', 'blue').style('opacity', default_opacity).on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14994 d3.select(this).style('opacity', high_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14995 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14996 d3.select(this).style('opacity', default_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14997 }).call(drag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
14999 function dragging() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15001 cgm.params.is_slider_drag = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15002
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15003 // d[0] = d3.event.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15004 var slider_pos = d3.event.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15006 if (slider_pos < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15007 slider_pos = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15008 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15010 if (slider_pos > slider_length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15011 slider_pos = slider_length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15012 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15014 if (this.nextSibling) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15015 this.parentNode.appendChild(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15016 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15018 slider_pos = d3.round(slider_pos, -1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15020 var slider_value = 10 - slider_pos / 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15022 d3.select(this).attr("transform", "translate(0, " + slider_pos + ")");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15024 change_groups(cgm, inst_rc, slider_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15025 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15027 function click_dendro_slider() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15028
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15029 var clicked_line_position = d3.mouse(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15031 var rel_pos = d3.round(clicked_line_position[1], -1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15033 d3.select(cgm.params.root + ' .' + inst_rc + '_group_circle').attr('transform', 'translate(0, ' + rel_pos + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15034
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15035 var slider_value = 10 - rel_pos / 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15036
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15037 change_groups(cgm, inst_rc, slider_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15039 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15040
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15041 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15042 /* 163 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15043 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15045 // var build_color_groups = require('./build_color_groups');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15046 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15048 /* Changes the groupings (x- and y-axis color bars).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15049 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15050 module.exports = function (cgm, inst_rc, inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15051
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15052 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15054 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15055 params.group_level.row = inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15056 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15057 params.group_level.col = inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15058 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15060 var is_change_group = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15061
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15062 make_dendro_triangles(cgm, inst_rc, is_change_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15063 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15065 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15066 /* 164 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15067 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15069 var make_dendro_crop_buttons = __webpack_require__(60);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15070
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15071 module.exports = function make_row_dendro_spillover(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15072
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15073 var viz = cgm.params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15074
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15075 // hide spillover from right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15076 var tmp_left = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin + viz.dendro_room.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15078 var r_spill_container = d3.select(viz.viz_svg).append('g').classed('right_spillover_container', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15079 return 'translate(' + tmp_left + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15080 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15081
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15082 var tmp_top = viz.norm_labels.margin.top + viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15084 r_spill_container.append('rect').attr('fill', viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15085 .attr('width', 10 * viz.clust.dim.width).attr('height', viz.svg_dim.height + 'px').attr('class', 'white_bars').attr('class', 'right_spillover').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15086 return 'translate( 0,' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15087 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15089 var x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15090 var y_offset = viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15091 r_spill_container.append('g').classed('row_dendro_icons_container', true).attr('transform', 'translate(' + x_offset + ',' + y_offset + ')').append('g').classed('row_dendro_icons_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15092
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15093 make_dendro_crop_buttons(cgm, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15095 // hide spillover from top of row dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15096 x_offset = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15097 y_offset = tmp_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15099 var tmp_width = viz.dendro_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15100 var tmp_height = viz.cat_room.col + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15101 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color).attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15102 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15103 }).classed('white_bars', true).classed('dendro_row_spillover', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15104 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15106 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15107 /* 165 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15108 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15110 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15111
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15112 var run_segment = __webpack_require__(166);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15113 var play_intro = __webpack_require__(167);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15114 var play_zoom = __webpack_require__(169);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15115 var play_reset_zoom = __webpack_require__(170);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15116 var play_reorder_row = __webpack_require__(172);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15117 var play_reorder_buttons = __webpack_require__(173);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15118 var play_search = __webpack_require__(175);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15119 var play_filter = __webpack_require__(176);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15120 var quick_cluster = __webpack_require__(199);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15121 var play_groups = __webpack_require__(200);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15122 var play_categories = __webpack_require__(201);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15123 var play_conclusion = __webpack_require__(202);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15124 var toggle_play_button = __webpack_require__(203);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15125 var play_menu_button = __webpack_require__(204);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15126
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15127 module.exports = function play_demo() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15128
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15129 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15130 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15131
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15132 if (d3.select(params.root + ' .running_demo').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15134 // prevent more than one demo from running at once
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15135 d3.select(params.root + ' .play_button').classed('running_demo', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15136
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15137 toggle_play_button(params, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15138
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15139 // prevent user interaction while playing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15140 $.blockUI({ css: {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15141 border: 'none',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15142 padding: '15px',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15143 backgroundColor: '#000',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15144 '-webkit-border-radius': '10px',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15145 '-moz-border-radius': '10px',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15146 opacity: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15147 color: '#fff',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15148 cursor: 'default'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15149 } });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15150
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15151 d3.selectAll('.blockUI').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15153 // intro text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15154 var inst_time = 750;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15156 if (cgm.params.viz.is_expand === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15157 inst_time = run_segment(params, inst_time, quick_cluster);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15158 inst_time = inst_time - 1500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15159 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15161 // clustergram interaction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15162 ///////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15163 inst_time = run_segment(params, inst_time, play_intro);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15164 inst_time = run_segment(params, inst_time, play_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15165 inst_time = run_segment(cgm, inst_time, play_reset_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15166 inst_time = run_segment(params, inst_time, play_categories);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15167 inst_time = run_segment(params, inst_time, play_reorder_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15168
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15169 // sidebar interaction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15170 ///////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15171 inst_time = run_segment(params, inst_time, play_menu_button);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15172 inst_time = run_segment(params, inst_time, play_groups);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15173 inst_time = run_segment(params, inst_time, play_reorder_buttons);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15174 inst_time = run_segment(params, inst_time, play_search);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15175 inst_time = run_segment(cgm, inst_time, play_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15176
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15177 // conclusion
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15178 ///////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15179 inst_time = run_segment(params, inst_time, quick_cluster);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15180 inst_time = run_segment(params, inst_time, play_conclusion);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15181 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15182 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15183
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15184 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15185 /* 166 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15186 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15188
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15189 module.exports = function run_segment(segment_data, inst_time, inst_segment) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15190 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15192 var timer = setTimeout(inst_segment().run, inst_time, segment_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15193
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15194 // set up kill demo that will stop setTimeouts
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15195 //////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15196 // if (clear_timer){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15197 // clearTimeout(timer);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15198 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15199
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15200 var inst_duration = inst_segment().get_duration();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15201 inst_time = inst_time + inst_duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15202
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15203 return inst_time;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15204 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15206 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15207 /* 167 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15208 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15210 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15212 module.exports = function play_intro() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15213
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15214 var speed_up = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15216 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15217 var text_1 = 'Clustergrammer allows users to generate\ninteractive and ' + 'sharable visualizations\nby uploading a matrix';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15218 var text_2 = "This demo will quickly overview some\nof Clustergrammer's " + "interactive features";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15219
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15220 setTimeout(demo_text, 0, params, text_1, 4500 / speed_up);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15221 setTimeout(demo_text, 4500 / speed_up, params, text_2, 4500 / speed_up);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15222 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15224 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15225 return 10000 / speed_up;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15226 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15228 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15229 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15230 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15231 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15232 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15234 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15235 /* 168 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15236 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15238 module.exports = function demo_text(params, text, read_duration) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15240 var split_text = text.split('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15241
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15242 if (split_text.length < 3) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15243 split_text.push('');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15244 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15246 d3.select(params.root + ' .demo_group').style('opacity', 0).transition().duration(250).style('opacity', 1).transition().duration(250).delay(read_duration).style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15247
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15248 for (var i = 0; i < split_text.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15249
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15250 var inst_text_num = i + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15251
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15252 // make text box
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15253 //////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15254 var inst_text_obj = d3.select(params.root + ' .demo_group').select('#text_' + inst_text_num).text(split_text[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15255 var bbox = inst_text_obj[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15257 var box_opacity = 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15258
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15259 var tmp_fs = Number(d3.select('.demo_group').select('text').style('font-size').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15260 var shift_height = tmp_fs * 1.3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15261
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15262 d3.select(params.root + ' .demo_group').select('.rect_' + inst_text_num).style('fill', 'white').attr('width', bbox.width + 20).attr('height', bbox.height).attr('x', -10).attr('y', bbox.y + i * shift_height).style('opacity', box_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15263 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15264 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15266 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15267 /* 169 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15268 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15269
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15270 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15271 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15273 module.exports = function play_zoom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15275 function run(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15277 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15278 var text = 'Zoom and pan by\nscrolling and dragging';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15279 demo_text(params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15281 setTimeout(two_translate_zoom, 1500, cgm, 0, 0, 4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15282 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15283
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15284 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15285 return 4000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15286 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15288 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15289 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15290 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15291 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15292 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15293
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15294 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15295 /* 170 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15296 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15298 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15299 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15300 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15302 module.exports = function play_reset_zoom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15303
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15304 function run(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15305
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15306 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15308 var text = 'Reset zoom by double-clicking\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15309 demo_text(params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15310
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15311 setTimeout(sim_click, 2000, params, 'double', 300, 300);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15312 setTimeout(two_translate_zoom, 2400, cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15313 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15314
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15315 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15316 return 4500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15317 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15319 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15320 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15321 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15322 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15323 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15325 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15326 /* 171 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15327 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15329 module.exports = function sim_click(params, single_double, pos_x, pos_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15331 var click_duration = 200;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15333 var click_circle = d3.select(params.root + ' .viz_svg').append('circle').attr('cx', pos_x).attr('cy', pos_y).attr('r', 25).style('stroke', 'black').style('stroke-width', '3px').style('fill', '#007f00').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15335 if (single_double === 'double') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15336 click_circle.transition().duration(click_duration).style('opacity', 0.0).transition().duration(50).style('opacity', 0.5).transition().duration(click_duration).style('opacity', 0.0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15337 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15338 click_circle.transition().duration(click_duration).style('opacity', 0.0).transition().duration(250).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15339 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15340 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15341
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15342 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15343 /* 172 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15344 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15346 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15347 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15348
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15349 module.exports = function play_reorder_row() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15350 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15352 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15354 var text = 'Reorder the matrix based on a single\nrow or column by double-clicking a\nlabel';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15355 demo_text(params, text, 7000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15357 var inst_element = get_row_element(params, 'EGFR');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15359 var group_trans = d3.select(inst_element).attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15360
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15361 var container_trans = d3.select(params.root + ' .clust_container').attr('transform').split(',')[1].replace(')', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15362
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15363 var x_trans = params.viz.norm_labels.width.row * 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15365 var row_trans = group_trans.split(',')[1].replace(')', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15366 var y_trans = String(Number(row_trans) + Number(container_trans) + params.viz.rect_height / 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15368 var wait_click = 4000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15369 setTimeout(sim_click, wait_click, params, 'double', x_trans, y_trans);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15370 var wait_reorder = wait_click + 300;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15371 setTimeout(fire_double_click_row, wait_reorder, params, inst_element);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15372 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15374 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15375 return 8000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15377
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15378 function get_row_element(params, inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15380 var inst_element = d3.selectAll(params.root + ' .row_label_group').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15381 var inst_data = this.__data__;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15382 return inst_data.name == inst_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15383 })[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15385 return inst_element;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15386 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15388 function fire_double_click_row(params, inst_element) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15389
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15390 $(inst_element).d3DblClick();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15391 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15392
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15393 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15394 jQuery.fn.d3DblClick = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15395 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15396 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15397 evt.initMouseEvent("dblclick", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15398 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15399 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15400 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15401
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15402 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15403 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15404 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15405 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15406 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15407
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15408 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15409 /* 173 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15410 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15412 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15413 var highlight_sidebar_element = __webpack_require__(174);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15414
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15415 module.exports = function play_reorder_buttons() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15416 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15418 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15419
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15420 var text = 'Reorder all rows and columns\nby clicking the reorder\n buttons';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15421 demo_text(params, text, 9000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15422
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15423 setTimeout(highlight_sidebar_element, 3000, params, 'toggle_col_order');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15424 setTimeout(click_reorder_button, 3500, params, 'col', 'rank');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15425
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15426 setTimeout(highlight_sidebar_element, 7000, params, 'toggle_row_order');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15427 setTimeout(click_reorder_button, 7500, params, 'row', 'rank');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15428 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15429
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15430 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15431 return 11000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15432 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15434 function click_reorder_button(params, inst_rc, inst_order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15435 var inst_button = d3.selectAll('.toggle_' + inst_rc + '_order .btn').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15436 return this.__data__ == inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15437 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15439 $(inst_button).click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15440 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15442 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15443 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15444 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15445 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15446 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15448 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15449 /* 174 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15450 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15452 module.exports = function highlight_sidebar_element(params, highlight_class, duration = 4000) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15454 if (highlight_class.indexOf('slider') < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15455 d3.select(params.root + ' .' + highlight_class).style('background', '#007f00').style('box-shadow', '0px 0px 10px 5px #007f00').transition().duration(1).delay(duration).style('background', '#FFFFFF').style('box-shadow', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15456 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15457 d3.select(params.root + ' .' + highlight_class).style('box-shadow', '0px 0px 10px 5px #007f00').transition().duration(1).delay(duration).style('box-shadow', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15458 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15459 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15461 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15462 /* 175 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15463 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15465 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15466 var highlight_sidebar_element = __webpack_require__(174);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15467 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15469 module.exports = function play_search() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15470
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15471 function run(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15473 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15474 var text = 'Search for rows using\nthe search box';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15475 demo_text(params, text, 5000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15477 var ini_delay = 2500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15478 setTimeout(highlight_sidebar_element, ini_delay, params, 'gene_search_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15479
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15480 // manually mimic typing and autocomplete
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15481 setTimeout(type_out_search, ini_delay + 1000, params, 'E');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15482 setTimeout(type_out_search, ini_delay + 1500, params, 'EG');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15483 setTimeout(type_out_search, ini_delay + 2000, params, 'EGF');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15484 setTimeout(type_out_search, ini_delay + 2500, params, 'EGFR');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15485
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15486 setTimeout(run_search, 5500, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15487
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15488 setTimeout(two_translate_zoom, 7500, cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15489 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15490
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15491 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15492 return 10000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15493 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15494
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15495 function type_out_search(params, inst_string) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15496 $(params.root + ' .gene_search_box').val(inst_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15497 $(params.root + ' .gene_search_box').autocomplete("search", inst_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15498 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15499
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15500 function run_search(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15501 $(params.root + ' .submit_gene_button').click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15502 $(params.root + ' .gene_search_box').autocomplete("search", '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15503 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15505 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15506 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15507 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15508 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15509 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15511 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15512 /* 176 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15513 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15515 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15516 var highlight_sidebar_element = __webpack_require__(174);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15517 var update_viz_with_view = __webpack_require__(177);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15519 module.exports = function play_filter() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15521 function run(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15522 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15523
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15524 var text = 'Filter rows based on sum or\nvariance using the sliders';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15525 demo_text(params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15527 var filter_type = 'N_row_sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15528
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15529 setTimeout(highlight_sidebar_element, 5000, params, 'slider_' + filter_type, 13000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15530
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15531 text = 'Filter: Top 20 rows by sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15532 setTimeout(demo_text, 5000, params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15533 setTimeout(run_update, 5300, cgm, filter_type, 20, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15534
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15535 text = 'Filter: Top 10 rows by sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15536 setTimeout(demo_text, 10000, params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15537 setTimeout(run_update, 10300, cgm, filter_type, 10, 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15538
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15539 text = 'Filter: All rows';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15540 setTimeout(demo_text, 15000, params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15541 setTimeout(run_update, 15300, cgm, filter_type, 'all', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15542 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15544 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15545 return 19500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15546 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15547
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15548 function run_update(cgm, filter_type, filter_value, filter_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15549
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15550 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15552 var requested_view = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15553 requested_view[filter_type] = filter_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15554 update_viz_with_view(cgm, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15556 // quick fix for slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15557 $(params.root + ' .slider_' + filter_type).slider("value", filter_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15558
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15559 var unit_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15560 if (filter_type === 'N_row_sum') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15561 unit_name = 'sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15562 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15563 unit_name = 'variance';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15564 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15565
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15566 d3.select(params.root + ' .title_' + filter_type).text('Top rows ' + unit_name + ': ' + filter_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15567 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15569 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15570 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15571 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15572 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15573 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15575 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15576 /* 177 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15577 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15578
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15579 var make_network_using_view = __webpack_require__(10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15580 var disable_sidebar = __webpack_require__(178);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15581 var update_viz_with_network = __webpack_require__(179);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15582
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15583 module.exports = function update_viz_with_view(cgm, requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15585 disable_sidebar(cgm.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15587 // make new_network_data by filtering the original network data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15588 var new_network_data = make_network_using_view(cgm.config, cgm.params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15589
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15590 // reset crop button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15591 d3.select(cgm.params.root + ' .crop_button').style('color', '#337ab7').classed('fa-crop', true).classed('fa-undo', false).classed('active_cropping', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15593 // reset dendrogram filtering when updating with a new view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15594 // e.g. with the row filter sliders
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15595 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15596
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15597 // set class to reflect that no filtering was ran
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15598 d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_group').classed('ran_filter', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15600 // display all crop buttons when cropping has not been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15601 d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_container').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15602 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15603
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15604 update_viz_with_network(cgm, new_network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15605 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15606
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15607 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15608 /* 178 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15609 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15611 module.exports = function disable_sidebar(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15613 d3.selectAll(params.root + ' .btn').attr('disabled', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15614 d3.select(params.viz.viz_svg).style('opacity', 0.70);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15615 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15617 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15618 /* 179 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15619 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15620
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15621 var make_params = __webpack_require__(9);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15622 var define_enter_exit_delays = __webpack_require__(180);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15623 var enter_exit_update = __webpack_require__(181);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15624 var initialize_resizing = __webpack_require__(123);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15625 var make_col_cat = __webpack_require__(152);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15626 var make_row_cat = __webpack_require__(158);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15627 var make_row_dendro = __webpack_require__(159);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15628 var make_col_dendro = __webpack_require__(160);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15629 var ini_sidebar = __webpack_require__(192);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15630 var enable_sidebar = __webpack_require__(194);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15631 var ini_doubleclick = __webpack_require__(133);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15632 var update_reorder_buttons = __webpack_require__(195);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15633 var make_row_cat_super_labels = __webpack_require__(122);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15634 var modify_row_node_cats = __webpack_require__(196);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15635 var run_zoom = __webpack_require__(125);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15636 var ds_enter_exit_update = __webpack_require__(198);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15637 var make_cat_params = __webpack_require__(32);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15639 module.exports = function update_viz_with_network(cgm, new_network_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15641 // console.log('UPDATE VIZ WITH NETWORK')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15642
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15643 // set runnning_update class, prevents multiple update from running at once
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15644 d3.select(cgm.params.viz.viz_svg).classed('running_update', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15646 // remove downsampled rows always
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15647 d3.selectAll(cgm.params.root + ' .ds' + String(cgm.params.viz.ds_level) + '_row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15649 // run optional callback function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15650 // console.log('before and after matrix_update_callback')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15651 // console.log(new_network_data.row_nodes[0]['cat-0'])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15652 if (cgm.params.matrix_update_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15653 cgm.params.matrix_update_callback();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15654 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15655 // console.log(new_network_data.row_nodes[0]['cat-0'])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15656
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15657 var inst_group_level = cgm.params.group_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15658 var inst_crop_fitler = cgm.params.crop_filter_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15660 // make tmp config to make new params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15661 var tmp_config = jQuery.extend(true, {}, cgm.config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15663 var new_row_cats = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15665 // bring in 'new' category data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15666 if (cgm.params.new_row_cats != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15667 modify_row_node_cats(cgm.params.new_row_cats, new_network_data.row_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15668 new_row_cats = cgm.params.new_row_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15669 cgm.params.new_row_cats = new_row_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15670 // do not preserve the updated (row) cats
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15671 var predefined_cat_colors = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15672 cgm.params.viz = make_cat_params(cgm.params, cgm.params.viz, predefined_cat_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15673 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15675 tmp_config.network_data = new_network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15676 tmp_config.inst_order = cgm.params.viz.inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15677 tmp_config.input_domain = cgm.params.matrix.opacity_scale.domain()[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15678
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15679 update_reorder_buttons(tmp_config, cgm.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15681 // tmp_config.ini_expand = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15682 tmp_config.ini_view = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15683 tmp_config.current_col_cat = cgm.params.current_col_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15685 // disabled, causing problems when cropping
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15686 // always preserve category colors when updating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15687 tmp_config.cat_colors = cgm.params.viz.cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15689 var new_params = make_params(tmp_config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15691 // this function is sensitive to further updates, so run here
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15692 var delays = define_enter_exit_delays(cgm.params, new_params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15693
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15694 // pass the newly calcluated params back to the cgm object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15695 cgm.params = new_params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15697 // set up zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15698 cgm.params.zoom_behavior = d3.behavior.zoom().scaleExtent([1, cgm.params.viz.square_zoom * cgm.params.viz.zoom_ratio.x]).on('zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15699 run_zoom(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15700 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15701
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15702 // have persistent group levels while updating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15703 cgm.params.group_level = inst_group_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15705 // have persistent crop_filter_nodes while updating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15706 cgm.params.crop_filter_nodes = inst_crop_fitler;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15708 // only run enter-exit-updates if there is no downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15709 if (cgm.params.viz.ds_num_levels === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15710 // new_network_data is necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15711 enter_exit_update(cgm, new_network_data, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15712 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15713 ds_enter_exit_update(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15714 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15716 // reduce opacity during update
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15717 d3.select(cgm.params.viz.viz_svg).style('opacity', 0.70);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15719 make_row_cat(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15720 make_row_cat_super_labels(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15722 if (cgm.params.viz.show_categories.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15723 make_col_cat(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15724 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15725
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15726 if (cgm.params.viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15727 make_row_dendro(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15728 make_col_dendro(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15729 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15731 initialize_resizing(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15733 d3.select(cgm.params.viz.viz_svg).call(cgm.params.zoom_behavior);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15734
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15735 ini_doubleclick(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15737 ini_sidebar(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15739 cgm.params.viz.run_trans = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15741 // d3.selectAll(cgm.params.viz.root_tips)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15742 // .style('opacity',0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15743
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15744 setTimeout(enable_sidebar, 2500, cgm.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15745
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15746 // remove all dendro shadows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15747 setTimeout(remove_shadows, 50);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15748 setTimeout(remove_shadows, 100);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15749 setTimeout(remove_shadows, 500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15750 setTimeout(remove_shadows, 1000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15751 setTimeout(remove_shadows, 1500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15753 function remove_shadows() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15754 d3.selectAll('.dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15755 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15756
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15757 function finish_update() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15758 d3.select(cgm.params.viz.viz_svg).transition().duration(250).style('opacity', 1.0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15760 setTimeout(finish_update_class, 1000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15761 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15763 setTimeout(finish_update, delays.enter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15764
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15765 function finish_update_class() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15766 d3.select(cgm.params.viz.viz_svg).classed('running_update', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15767 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15768 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15770 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15771 /* 180 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15772 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15774 module.exports = function (old_params, params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15775
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15776 // exit, update, enter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15778 // check if exit or enter or both are required
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15779 var old_row_nodes = old_params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15780 var old_col_nodes = old_params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15781 var old_row = _.map(old_row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15782 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15783 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15784 var old_col = _.map(old_col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15785 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15786 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15787 var all_old_nodes = old_row.concat(old_col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15789 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15790 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15791 var row = _.map(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15792 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15793 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15794 var col = _.map(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15795 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15796 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15797 var all_nodes = row.concat(col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15798
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15799 var exit_nodes = _.difference(all_old_nodes, all_nodes).length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15800 var enter_nodes = _.difference(all_nodes, all_old_nodes).length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15802 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15804 if (exit_nodes > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15805 delays.update = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15806 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15807 delays.update = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15808 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15810 if (enter_nodes > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15811 delays.enter = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15812 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15813 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15814 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15816 delays.enter = delays.enter + delays.update;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15818 delays.run_transition = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15820 var old_num_links = old_params.network_data.links.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15821 var new_num_links = params.network_data.links.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15822 var cutoff_num_links = 0.5 * params.matrix.def_large_matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15824 if (old_num_links > cutoff_num_links || new_num_links > cutoff_num_links) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15825 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15826 delays.update = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15827 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15828 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15830 return delays;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15831 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15833 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15834 /* 181 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15835 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15837 var reset_size_after_update = __webpack_require__(182);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15838 var make_row_label_container = __webpack_require__(49);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15839 var make_col_label_container = __webpack_require__(103);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15840 var eeu_existing_row = __webpack_require__(183);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15841 var exit_components = __webpack_require__(187);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15842 var draw_gridlines = __webpack_require__(39);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15843 var enter_row_groups = __webpack_require__(188);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15844 var resize_containers = __webpack_require__(191);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15845 var label_constrain_and_trim = __webpack_require__(117);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15846 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15848 module.exports = function enter_exit_update(cgm, network_data, delays) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15850 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15851
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15852 // remove old tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15853 d3.selectAll(params.viz.root_tips).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15855 // d3-tooltip - for tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15856 var tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15857 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15858 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_tile_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15859 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15860 }).direction('nw').offset([0, 0]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15861 var inst_value = String(d.value.toFixed(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15862 var tooltip_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15863
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15864 if (params.keep_orig) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15865 var orig_value = String(d.value_orig.toFixed(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15866 tooltip_string = '<p>' + d.row_name + ' and ' + d.col_name + '</p>' + '<p> normalized value: ' + inst_value + '</p>' + '<div> original value: ' + orig_value + '</div>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15867 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15868 tooltip_string = '<p>' + d.row_name + ' and ' + d.col_name + '</p>' + '<div> value: ' + inst_value + '</div>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15869 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15871 return tooltip_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15872 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15874 d3.select(params.root + ' .clust_group').call(tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15876 // necessary for repositioning clust, col and col-cat containers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15877 resize_containers(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15879 var duration = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15880
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15881 // make global so that names can be accessed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15882 var row_nodes = network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15883 var col_nodes = network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15884 var links = network_data.links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15885
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15886 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15887 var tile_data = links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15889 // add name to links for object constancy
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15890 for (var i = 0; i < tile_data.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15891 var d = tile_data[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15892 tile_data[i].name = row_nodes[d.source].name + '_' + col_nodes[d.target].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15893 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15895 // move rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15896 var move_rows = d3.select(params.root + ' .clust_group').selectAll('.row').data(params.matrix.matrix, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15897 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15898 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15899
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15900 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15901 move_rows.transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15902 var tmp_index = d.row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15903 return 'translate(0,' + params.viz.y_scale(tmp_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15904 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15905 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15906 move_rows.attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15907 var tmp_index = d.row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15908 return 'translate(0,' + params.viz.y_scale(tmp_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15909 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15910 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15912 // update existing rows - enter, exit, update tiles in existing row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15913 d3.select(params.root + ' .clust_group').selectAll('.row').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15914 // TODO add tip back to arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15915 var inst_selection = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15916 eeu_existing_row(params, d, delays, duration, inst_selection, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15917 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15919 d3.selectAll(params.root + ' .horz_lines').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15920 d3.selectAll(params.root + ' .vert_lines').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15922 // exit
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15923 ////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15924 exit_components(params, delays, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15925
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15926 // resize clust components using appropriate delays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15927 reset_size_after_update(cgm, duration, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15929 // enter new elements
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15930 //////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15931 enter_row_groups(params, delays, duration, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15932
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15933 // update existing rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15934 make_row_label_container(cgm, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15935 make_col_label_container(cgm, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15936
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15937 draw_gridlines(params, delays, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15938
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15939 setTimeout(label_constrain_and_trim, 2000, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15940 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15941
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15942 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15943 /* 182 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15944 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15945
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15946 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15947 var calc_clust_height = __webpack_require__(22);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15948 var get_svg_dim = __webpack_require__(19);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15949 var calc_clust_width = __webpack_require__(21);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15950 var reset_zoom = __webpack_require__(134);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15951 var resize_dendro = __webpack_require__(135);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15952 var resize_super_labels = __webpack_require__(136);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15953 var resize_spillover = __webpack_require__(137);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15954 var resize_row_labels = __webpack_require__(139);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15955 var resize_row_viz = __webpack_require__(141);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15956 var resize_col_labels = __webpack_require__(142);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15957 var resize_col_text = __webpack_require__(143);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15958 var resize_col_triangle = __webpack_require__(144);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15959 var resize_col_hlight = __webpack_require__(145);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15960 var resize_label_bars = __webpack_require__(148);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15961 var calc_default_fs = __webpack_require__(31);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15962 var calc_zoom_switching = __webpack_require__(30);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15963 // var show_visible_area = require('../zoom/show_visible_area');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15964 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15965
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15966 module.exports = function reset_size_after_update(cgm, duration = 0, delays = null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15968 if (delays === null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15969 delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15970 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15971 delays.update = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15972 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15973 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15975 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15977 var row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15978
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15979 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15981 // // not sure if this is necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15982 // ////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15983 // show_visible_area(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15984 // // quick fix for column filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15985 // setTimeout(show_visible_area, 2200, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15986
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15987 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15988
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15989 reset_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15990
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15991 // Resetting some visualization parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15992 params = get_svg_dim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15993 params.viz = calc_clust_width(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15994 params.viz = calc_clust_height(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15996 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15997 if (params.viz.clust.dim.width <= params.viz.clust.dim.height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15998 params.viz.clust.dim.height = params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
15999 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16000 params.viz.clust.dim.width = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16001 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16002 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16003
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16004 params.viz = calc_zoom_switching(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16006 // redefine x_scale and y_scale rangeBands
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16007 params.viz.x_scale.rangeBands([0, params.viz.clust.dim.width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16008 params.viz.y_scale.rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16010 // redefine zoom extent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16011 params.viz.square_zoom = params.viz.norm_labels.width.col / (params.viz.x_scale.rangeBand() / 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16012 params.zoom_behavior.scaleExtent([1, params.viz.square_zoom * params.viz.zoom_ratio.x]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16014 // redefine border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16015 params.viz.border_width.x = params.viz.x_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16016 params.viz.border_width.y = params.viz.y_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16018 params = calc_default_fs(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16020 // resize the svg
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16021 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16022 var svg_group = d3.select(params.viz.viz_wrapper).select('svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16024 svg_group.select(params.root + ' .grey_background').transition().delay(delays.update).duration(duration).attr('width', params.viz.clust.dim.width).attr('height', params.viz.clust.dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16026 resize_row_labels(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16027
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16028 // do not delay the font size change since this will break the bounding box calc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16029 svg_group.selectAll('.row_label_group').select('text').style('font-size', params.labels.default_fs_row + 'px').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16030 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16031 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16033 // change the size of the highlighting rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16034 svg_group.selectAll('.row_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16035 var bbox = d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16036 d3.select(this).select('rect').attr('x', bbox.x).attr('y', 0).attr('width', bbox.width).attr('height', params.viz.y_scale.rangeBand()).style('fill', 'yellow').style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16037 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16038 // highlight target genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16039 if (d.target === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16040 inst_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16041 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16042 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16043 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16044 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16046 resize_row_viz(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16048 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16049
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16050 // positioning row text after row text size may have been reduced
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16051 svg_group.selectAll('.row_label_group').select('text').transition().delay(delays.update).duration(duration).attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16053 svg_group.selectAll('.row_cat_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16054 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16055 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16056 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16057 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16058 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16060 svg_group.selectAll('.row_cat_group').select('path').transition().delay(delays.update).duration(duration).attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16061 var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16062 var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16063 var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16064 var mid_y = params.viz.y_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16065 var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16066 var final_y = params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16067 var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' + mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16068 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16069 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16070
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16071 svg_group.selectAll('.row_dendro_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16072 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16073 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16074 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16075 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16076 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16077 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16078
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16079 // positioning row text after row text size may have been reduced
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16080 svg_group.selectAll('.row_label_group').select('text').attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16081
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16082 svg_group.selectAll('.row_cat_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16083 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16084 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16085 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16086 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16087 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16089 svg_group.selectAll('.row_cat_group').select('path').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16090 var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16091 var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16092 var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16093 var mid_y = params.viz.y_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16094 var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16095 var final_y = params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16096 var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' + mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16097 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16098 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16100 svg_group.selectAll('.row_dendro_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16101 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16102 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16103 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16104 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16105 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16106 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16107
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16108 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16110 resize_label_bars(cgm, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16111 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16113 // resize col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16114 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16115 // reduce width of rotated rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16116
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16117 resize_col_labels(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16118 resize_col_text(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16119 resize_col_triangle(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16121 resize_col_hlight(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16122
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16123 resize_dendro(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16124 resize_super_labels(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16125 resize_spillover(params.viz, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16126
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16127 // reset zoom and translate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16128 params.zoom_behavior.scale(1).translate([params.viz.clust.margin.left, params.viz.clust.margin.top]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16129 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16131 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16132 /* 183 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16133 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16135 var exit_existing_row = __webpack_require__(184);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16136 var enter_existing_row = __webpack_require__(185);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16137 var update_split_tiles = __webpack_require__(186);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16138 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16139 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16140 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16142 // TODO add tip back to arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16143 module.exports = function eeu_existing_row(params, ini_inp_row_data, delays, duration, row_selection, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16144
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16145 var inp_row_data = ini_inp_row_data.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16147 // remove zero values from
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16148 var row_values = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16149 return num.value != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16150 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16152 // bind data to tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16153 var cur_row_tiles = d3.select(row_selection).selectAll('.tile').data(row_values, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16154 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16155 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16156
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16157 exit_existing_row(params, delays, cur_row_tiles, inp_row_data, row_selection);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16159 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16160 // Update
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16161 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16163 // update tiles in x direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16164 var update_row_tiles = cur_row_tiles.on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16165 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16166 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16167 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16168 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16170 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16172 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16174 update_row_tiles.transition().delay(delays.update).duration(duration).attr('width', params.viz.rect_width).attr('height', params.viz.rect_height).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16175 if (_.contains(col_nodes_names, d.col_name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16176 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16177 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16178 return 'translate(0,0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16179 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16180 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16181 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16182 update_row_tiles.attr('width', params.viz.rect_width).attr('height', params.viz.rect_height).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16183 if (_.contains(col_nodes_names, d.col_name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16184 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16185 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16186 return 'translate(0,0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16187 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16188 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16189 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16191 if (params.matrix.tile_type == 'updn') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16192 update_split_tiles(params, inp_row_data, row_selection, delays, duration, cur_row_tiles, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16193 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16194
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16195 enter_existing_row(params, delays, duration, cur_row_tiles, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16196 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16198 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16199 /* 184 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16200 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16202 module.exports = function exit_existing_row(params, delays, cur_row_tiles, inp_row_data, row_selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16204 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16205 cur_row_tiles.exit().transition().duration(300).attr('fill-opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16206 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16207 cur_row_tiles.exit().attr('fill-opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16208 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16210 if (params.matrix.tile_type == 'updn') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16212 // value split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16213 var row_split_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16214 return num.value_up != 0 || num.value_dn != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16215 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16217 // tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16218 var cur_tiles_up = d3.select(row_selection).selectAll('.tile_up').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16219 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16220 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16221
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16222 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16223 cur_tiles_up.exit().transition().duration(300).attr('fill', '0').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16224 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16225 cur_tiles_up.exit().attr('fill', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16226 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16228 // tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16229 var cur_tiles_dn = d3.select(row_selection).selectAll('.tile_dn').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16230 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16231 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16232
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16233 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16234 cur_tiles_dn.exit().transition().duration(300).attr('fill', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16235 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16236 cur_tiles_dn.exit().attr('fill', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16237 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16238 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16239 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16241 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16242 /* 185 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16243 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16244
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16245 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16246 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16247 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16249 module.exports = function enter_existing_row(params, delays, duration, cur_row_tiles, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16251 // enter new tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16252 var new_tiles = cur_row_tiles.enter().append('rect').attr('class', 'tile row_tile').attr('width', params.viz.rect_width).attr('height', params.viz.rect_height).on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16253 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16254 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16255 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16256 }).attr('fill-opacity', 0).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16257 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16258 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16259
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16260 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16261 new_tiles.transition().delay(delays.enter).duration(duration).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16262 return d.value > params.matrix.mid_val ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16263 }).attr('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16264 var op_val = 0, output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16265 op_val = params.matrix.mid_val + Math.abs(d.value - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16266 output_opacity = params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16267 return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16268 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16269 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16270 new_tiles.style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16271 return d.value > params.matrix.mid_val ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16272 }).attr('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16273 var op_val = 0, output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16274 op_val = params.matrix.mid_val + Math.abs(d.value - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16275 output_opacity = params.matrix.opacity_scale(Math.abs(op_val));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16276 return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16277 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16278 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16279
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16280 // remove new tiles if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16281 new_tiles.each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16282 if (Math.abs(d.value_up) > 0 && Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16283 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16284 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16285 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16286 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16288 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16289 /* 186 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16290 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16292 var draw_up_tile = __webpack_require__(43);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16293 var draw_dn_tile = __webpack_require__(44);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16294 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16295 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16296 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16298 module.exports = function update_split_tiles(params, inp_row_data, row_selection, delays, duration, cur_row_tiles, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16299
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16300 // value split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16301 var row_split_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16302 return num.value_up != 0 || num.value_dn != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16303 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16304
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16305 // tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16306 var cur_tiles_up = d3.select(row_selection).selectAll('.tile_up').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16307 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16308 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16309
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16310 // update split tiles_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16311 var update_tiles_up = cur_tiles_up.on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16312 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16313 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16314 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16315 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16317 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16318 update_tiles_up.transition().delay(delays.update).duration(duration).attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16319 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16320 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16321 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16322 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16323 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16324 update_tiles_up.attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16325 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16326 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16327 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16328 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16329 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16331 // tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16332 var cur_tiles_dn = d3.select(row_selection).selectAll('.tile_dn').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16333 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16334 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16335
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16336 // update split tiles_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16337 var update_tiles_dn = cur_tiles_dn.on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16338 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16339 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16340 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16341 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16342
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16343 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16344 update_tiles_dn.transition().delay(delays.update).duration(duration).attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16345 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16346 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16347 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16348 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16349 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16350 update_tiles_dn.attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16351 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16352 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16353 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16354 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16355 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16357 // remove tiles when splitting is done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16358 cur_row_tiles.selectAll('.tile').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16359 if (Math.abs(d.value_up) > 0 && Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16360 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16361 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16362 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16363 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16365 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16366 /* 187 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16367 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16369 module.exports = function exit_components(params, delays, duration) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16370
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16371 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16372 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16374 // remove entire rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16375 var exiting_rows = d3.select(params.root + ' .clust_group').selectAll('.row').data(params.matrix.matrix, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16376 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16377 }).exit();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16379 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16380 exiting_rows.transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16381 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16382 exiting_rows.style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16383 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16385 // remove row labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16386 d3.selectAll(params.root + ' .row_label_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16387 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16388 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16389
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16390 // remove column labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16391 d3.selectAll(params.root + ' .col_label_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16392 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16393 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16394
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16395 // remove row triangles and colorbars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16396 d3.selectAll(params.root + ' .row_cat_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16397 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16398 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16400 // remove row triangles and colorbars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16401 d3.selectAll(params.root + ' .row_dendro_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16402 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16403 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16405 d3.selectAll(params.root + ' .col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16406 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16407 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16408
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16409 d3.selectAll(params.root + ' .horz_lines').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16410 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16411 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16412
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16413 d3.selectAll(params.root + ' .vert_lines').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16414 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16415 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16416
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16417 // remove dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16418 d3.selectAll(params.root + ' .col_cat_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16419 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16420 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16421
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16422 d3.selectAll(params.root + ' .col_dendro_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16423 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16424 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16425 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16427 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16428 /* 188 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16429 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16431 var enter_new_rows = __webpack_require__(189);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16432
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16433 module.exports = function enter_row_groups(params, delays, duration, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16435 // enter new rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16436 var new_row_groups = d3.select(params.root + ' .clust_group').selectAll('.row').data(params.matrix.matrix, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16437 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16438 }).enter().append('g').classed('row', true).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16439 return 'translate(0,' + params.viz.y_scale(d.row_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16440 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16442 new_row_groups.each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16443 enter_new_rows(params, d, delays, duration, tip, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16444 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16445 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16446
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16447 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16448 /* 189 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16449 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16451 var enter_split_tiles = __webpack_require__(190);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16452 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16453 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16454 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16456 // make each row in the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16457 module.exports = function enter_new_rows(params, ini_inp_row_data, delays, duration, tip, row_selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16459 var inp_row_data = ini_inp_row_data.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16461 // remove zero values to make visualization faster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16462 var row_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16463 return num.value !== 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16464 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16465
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16466 // update tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16467 ////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16468 var tile = d3.select(row_selection).selectAll('rect').data(row_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16469 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16470 }).enter().append('rect').attr('class', 'tile row_tile').attr('width', params.viz.rect_width).attr('height', params.viz.rect_height)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16471 // switch the color based on up/dn value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16472 .style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16473 return d.value > params.matrix.mid_val ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16474 }).on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16475 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16476 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16477 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16478 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16479
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16480 tile.style('fill-opacity', 0).transition().delay(delays.enter).duration(duration).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16481 // calculate output opacity using the opacity scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16482 var op_val = 0, output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16483 op_val = params.matrix.mid_val + Math.abs(d.value - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16484 output_opacity = params.matrix.opacity_scale(Math.abs(op_val));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16485 return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16486 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16487
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16488 tile.attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16489 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16490 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16492 if (params.matrix.tile_type == 'updn') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16493 enter_split_tiles(params, inp_row_data, row_selection, tip, delays, duration, tile);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16494 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16495 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16496
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16497 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16498 /* 190 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16499 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16501 var draw_up_tile = __webpack_require__(43);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16502 var draw_dn_tile = __webpack_require__(44);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16503 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16505 module.exports = function enter_split_tiles(params, inp_row_data, row_selection, tip, delays, duration, tile) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16507 // value split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16508 var row_split_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16509 return num.value_up != 0 || num.value_dn != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16510 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16511
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16512 // tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16513 var new_tiles_up = d3.select(row_selection).selectAll('.tile_up').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16514 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16515 }).enter().append('path').attr('class', 'tile_up').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16516 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16517 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16518 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16519 }).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16520 return params.matrix.tile_colors[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16521 }).on('mouseover', function (p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16522 // highlight row - set text to active if
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16523 d3.selectAll(params.root + ' .row_label_group text').classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16524 return p.row_name === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16525 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16527 d3.selectAll(params.root + ' .col_label_text text').classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16528 return p.col_name === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16529 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16530 if (params.matrix.show_tile_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16531 tip.show(p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16532 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16533 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16534 d3.selectAll(params.root + ' text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16535 if (params.matrix.show_tile_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16536 tip.hide();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16537 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16538 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16540 new_tiles_up.style('fill-opacity', 0).transition().delay(delays.enter).duration(duration).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16541 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16542 if (Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16543 var op_val = params.matrix.mid_val + Math.abs(d.value_up - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16544 inst_opacity = params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16545 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16546 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16547 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16549 // tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16550 var new_tiles_dn = d3.select(row_selection).selectAll('.tile_dn').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16551 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16552 }).enter().append('path').attr('class', 'tile_dn').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16553 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16554 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16555 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16556 }).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16557 return params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16558 }).on('mouseover', function (p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16559 // highlight row - set text to active if
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16560 d3.selectAll(params.root + ' .row_label_group text').classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16561 return p.row_name === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16562 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16564 d3.selectAll(params.root + ' .col_label_text text').classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16565 return p.col_name === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16566 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16567 if (params.matrix.show_tile_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16568 tip.show(p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16569 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16570 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16571 d3.selectAll(params.root + ' text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16572 if (params.matrix.show_tile_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16573 tip.hide();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16574 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16575 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16576
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16577 new_tiles_dn.style('fill-opacity', 0).transition().delay(delays.enter).duration(duration).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16578 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16579 if (Math.abs(d.value_up) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16580 var op_val = params.matrix.mid_val + Math.abs(d.value_dn - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16581 inst_opacity = params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16582 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16583 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16584 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16585
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16586 // remove tiles when splitting is done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16587 tile.each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16588 if (Math.abs(d.value_up) > 0 && Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16589 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16590 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16591 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16592 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16593
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16594 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16595 /* 191 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16596 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16597
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16598 module.exports = function resize_containers(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16600 // reposition matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16601 d3.select(params.root + ' .clust_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16602
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16603 // reposition col container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16604 d3.select(params.root + ' .col_label_outer_container').attr('transform', 'translate(0,' + params.viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16606 // reposition col_viz container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16607 d3.select(params.root + ' .col_cat_outer_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16608 var inst_offset = params.viz.norm_labels.width.col + 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16609 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16610 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16611 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16613 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16614 /* 192 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16615 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16617 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16618
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16619 var change_groups = __webpack_require__(163);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16620 var all_reorder = __webpack_require__(115);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16621 var ini_cat_reorder = __webpack_require__(114);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16622 var run_row_search = __webpack_require__(193);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16624 module.exports = function ini_sidebar(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16625
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16626 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16628 var input = d3.select(params.root + ' .gene_search_box')[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16629 var awesomplete = new Awesomplete(input, { minChars: 1, maxItems: 15 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16630 var entities = cgm.params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16631 awesomplete.list = entities;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16633 // position awesomplete list elements above other elements in the page
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16634 d3.selectAll('.awesomplete ul').style('z-index', 99);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16636 // submit genes button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16637 $(params.root + ' .gene_search_box').keyup(function (e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16638 if (e.keyCode === 13) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16639 var search_gene = $(params.root + ' .gene_search_box').val();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16640 run_row_search(cgm, search_gene, entities);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16641 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16642 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16644 $(params.root + ' .submit_gene_button').off().click(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16645 var search_gene = $(params.root + ' .gene_search_box').val();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16646 run_row_search(cgm, search_gene, entities);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16647 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16649 var reorder_types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16650 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16651 reorder_types = ['both'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16652 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16653 reorder_types = ['row', 'col'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16654 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16656 _.each(reorder_types, function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16658 // reorder buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16659 $(params.root + ' .toggle_' + inst_rc + '_order .btn').off().click(function (evt) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16661 var order_id = $(evt.target).attr('name').replace('_row', '').replace('_col', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16663 d3.selectAll(params.root + ' .toggle_' + inst_rc + '_order .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16665 d3.select(this).classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16666
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16667 if (inst_rc != 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16668 all_reorder(cgm, order_id, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16669 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16670 all_reorder(cgm, order_id, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16671 all_reorder(cgm, order_id, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16672 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16673 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16674 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16675
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16676 ini_cat_reorder(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16678 // Opacity Slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16679 //////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16680 if (d3.select(cgm.params.root + ' .opacity_slider').select('#handle-one').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16681
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16682 var slider_fun = d3.slider().snap(true).value(1).min(0.1).max(1.9).step(0.1).on('slide', function (evt, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16683 run_on_opacity_slide(evt, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16684 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16685
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16686 d3.select(cgm.params.root + ' .opacity_slider').call(slider_fun);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16687 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16689 function run_on_dendro_slide(evt, value, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16690 $("#amount").val("$" + value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16691 var inst_index = value * 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16692 // var inst_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16693
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16694 if (inst_rc != 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16695 change_groups(cgm, inst_rc, inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16696 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16697 change_groups(cgm, 'row', inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16698 change_groups(cgm, 'col', inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16699 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16700 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16701
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16702 function run_on_opacity_slide(evt, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16703
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16704 var inst_index = 2 - value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16705 var scaled_max = cgm.params.matrix.abs_max_val * inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16706
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16707 cgm.params.matrix.opacity_scale.domain([0, scaled_max]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16708
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16709 d3.selectAll(cgm.params.root + ' .tile').style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16710 // calculate output opacity using the opacity scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16711 var op_val = 0, output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16712 op_val = cgm.params.matrix.mid_val + Math.abs(d.value - cgm.params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16713 var output_opacity = cgm.params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16714 return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16715 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16716 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16717 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16719 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16720 /* 193 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16721 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16723 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16725 module.exports = function run_row_search(cgm, search_term, entities) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16727 var prop = 'name';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16729 if (entities.indexOf(search_term) !== -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16731 // unhighlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16732 d3.selectAll(cgm.params.root + ' .row_label_group').select('rect').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16734 // calc pan_dy
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16735 var idx = _.indexOf(entities, search_term);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16736 var inst_y_pos = cgm.params.viz.y_scale(idx);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16737 var pan_dy = cgm.params.viz.clust.dim.height / 2 - inst_y_pos;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16739 var inst_zoom = cgm.params.viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16741 // working on improving zoom behavior
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16742 ///////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16743 ///////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16745 // // increase zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16746 // inst_zoom = 3 * inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16747
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16748 // // move visualization down less
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16749 // pan_dy = pan_dy - 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16751 two_translate_zoom(cgm, 0, pan_dy, inst_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16753 // set y zoom to zoom_switch
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16754 cgm.params.zoom_info.zoom_y = inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16755
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16756 // highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16757 d3.selectAll(cgm.params.root + ' .row_label_group').filter(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16758 return d[prop] === search_term;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16759 }).select('rect').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16760 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16761 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16763 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16764 /* 194 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16765 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16766
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16767 module.exports = function enable_sidebar(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16768
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16769 /* only enable dendrogram sliders if there has been no dendro_filtering */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16770
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16771 // only enable reordering if params.dendro_filter.row === false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16772 if (params.dendro_filter.row === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16774 // orders are switched!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16775 if (params.viz.inst_order.col === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16776 d3.select(params.root + ' .row_slider_group').style('opacity', 1).style('pointer-events', 'all');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16777 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16778 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16780 d3.selectAll(params.root + ' .toggle_row_order .btn').attr('disabled', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16781
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16782 if (params.dendro_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16783
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16784 // orders are switched!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16785 if (params.viz.inst_order.row === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16786 d3.select(params.root + ' .col_slider_group').style('opacity', 1).style('pointer-events', 'all');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16787 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16788 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16790 d3.selectAll(params.root + ' .toggle_col_order .btn').attr('disabled', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16792 d3.selectAll(params.root + ' .gene_search_button .btn').attr('disabled', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16794 params.viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16795 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16797 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16798 /* 195 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16799 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16801 module.exports = function update_reorder_buttons(tmp_config, params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16802 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16804 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16805 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16806 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16807 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16808 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16809 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16811 d3.selectAll(params.root + ' .toggle_' + other_rc + '_order .btn').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16812 return d3.select(this).attr('name') === tmp_config.inst_order[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16813 }).classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16814 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16815 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16817 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16818 /* 196 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16819 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16820
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16821 var remove_node_cats = __webpack_require__(197);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16822 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16824 module.exports = function modify_row_node_cats(cat_data, inst_nodes, strip_names = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16826 // console.log('MODIFY ROW NODE CATS')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16827 // console.log('CAT_DATA')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16828 // console.log(cat_data)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16830 var cat_type_num = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16831 var inst_index = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16832 var inst_cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16833 var inst_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16834 var inst_members;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16835 var inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16836 var inst_category;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16837 var inst_cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16838 var inst_full_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16839 var inst_cat_num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16841 // loop through row nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16842 //////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16843 _.each(inst_nodes, function (inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16845 inst_name = inst_node.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16846
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16847 // not sure if this is needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16848 // inst_name = inst_name.toUpperCase();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16850 if (strip_names === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16851 // only consider first part of inst_name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16852 ////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16853 // may improve this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16854 if (inst_name.indexOf(' ')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16855 inst_name = inst_name.split(' ')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16856 } else if (inst_name.indexOf('_')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16857 inst_name = inst_name.split('_')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16858 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16859 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16860
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16861 cat_type_num = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16862
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16863 remove_node_cats(inst_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16865 // loop through each category type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16866 _.each(cat_data, function (inst_cat_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16867
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16868 inst_cat_title = inst_cat_data.cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16869 inst_cats = inst_cat_data.cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16871 // initialize with no category
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16872 inst_category = 'false';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16873 inst_index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16875 inst_cat_num = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16877 // loop through each category in the category-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16878 _.each(inst_cats, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16880 inst_cat_name = inst_cat.cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16881 inst_members = inst_cat.members;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16883 // add category if node is a member
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16884 if (_.contains(inst_members, inst_name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16885
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16886 inst_category = inst_cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16887 inst_index = inst_cat_num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16888 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16889
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16890 inst_cat_num = inst_cat_num + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16891 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16893 if (utils.has(inst_cat_data, 'pval')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16895 var inst_pval = inst_cat_data.pval.toExponential();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16896 inst_full_cat = inst_cat_title + ': ' + inst_category + '<p> Pval ' + String(inst_pval) + '</p>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16897 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16898
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16899 if (inst_cat_title.indexOf('cat-') === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16900 inst_full_cat = inst_cat_title + ': ' + inst_category;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16901 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16902 inst_full_cat = inst_category;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16903 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16904 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16906 inst_node['cat-' + String(cat_type_num)] = inst_full_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16907 inst_node['cat_' + String(cat_type_num) + '_index'] = inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16909 cat_type_num = cat_type_num + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16910 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16911 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16912 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16914 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16915 /* 197 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16916 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16918 module.exports = function remove_node_cats(inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16920 var all_props = _.keys(inst_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16922 _.each(all_props, function (inst_prop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16924 if (inst_prop.indexOf('cat-') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16925 delete inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16926 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16928 if (inst_prop.indexOf('cat_') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16929 delete inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16930 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16931 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16932 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16934 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16935 /* 198 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16936 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16938 var reset_size_after_update = __webpack_require__(182);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16939 var make_col_label_container = __webpack_require__(103);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16940 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16941 var resize_containers = __webpack_require__(191);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16942
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16943 module.exports = function ds_enter_exit_update(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16944
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16945 // console.log('======== ds_enter_exit_update ===============');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16946
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16947 // remove row labels, remove non-downsampled rows, and add downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16948 d3.selectAll(cgm.params.root + ' .row_cat_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16949 d3.selectAll(cgm.params.root + ' .row_label_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16950 d3.selectAll(cgm.params.root + ' .row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16951
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16952 // no need to re-calculate the downsampled layers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16953 // calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16954 var zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16955 var zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16956 var make_all_rows = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16958 // show_visible_area is also run with two_translate_zoom, but at that point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16959 // the parameters were not updated and two_translate_zoom if only run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16960 // if needed to reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16961 show_visible_area(cgm, zooming_stopped, zooming_out, make_all_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16962
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16963 make_col_label_container(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16965 var col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16967 // remove column labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16968 d3.selectAll(cgm.params.root + ' .col_label_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16969 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16970 }).exit().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16972 d3.selectAll(cgm.params.root + ' .col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16973 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16974 }).exit().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16975
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16976 d3.selectAll(cgm.params.root + ' .col_cat_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16977 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16978 }).exit().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16979
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16980 d3.selectAll(cgm.params.root + ' .col_dendro_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16981 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16982 }).exit().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16984 // necessary for repositioning clust, col and col-cat containers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16985 resize_containers(cgm.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16986
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16987 // seeing if this fixes resizing issue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16988 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16989 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16990 delays.update = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16991 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16992 var duration = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16993 reset_size_after_update(cgm, duration, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16994 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16996 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16997 /* 199 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16998 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
16999
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17000 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17001
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17002 module.exports = function quick_cluster() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17003 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17004
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17005 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17007 var x_trans = Number(d3.select(params.root + ' .expand_button').attr('x').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17008 var y_trans = Number(d3.select(params.root + ' .expand_button').attr('y').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17010 var wait_click = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17011 var wait_real_click = 400;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17012 setTimeout(sim_click, wait_click, params, 'single', x_trans, y_trans);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17013 setTimeout(click_menu_button, wait_real_click, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17014
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17015 setTimeout(reset_cluster_order, 1500, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17016 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17018 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17019 return 3500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17020 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17022 function click_menu_button(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17023 $(params.root + ' .expand_button').d3Click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17024 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17026 function reset_cluster_order(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17027 click_reorder_button(params, 'row', 'clust');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17028 click_reorder_button(params, 'col', 'clust');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17029 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17031 function click_reorder_button(params, inst_rc, inst_order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17032 var inst_button = d3.selectAll('.toggle_' + inst_rc + '_order .btn').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17033 return this.__data__ == inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17034 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17035
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17036 $(inst_button).click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17037 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17038
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17039 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17040 jQuery.fn.d3Click = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17041 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17042 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17043 evt.initMouseEvent("click", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17044 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17045 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17046 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17048 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17049 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17050 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17051 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17052 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17054 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17055 /* 200 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17056 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17058 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17059 var highlight_sidebar_element = __webpack_require__(174);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17060 var change_groups = __webpack_require__(163);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17061
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17062 module.exports = function play_groups() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17063 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17065 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17067 var text = 'Identify row and column groups\nof varying sizes using ' + ' the\nsliders and dendrogram';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17068 demo_text(params, text, 10000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17069
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17070 setTimeout(highlight_sidebar_element, 3000, params, 'slider_col', 7000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17072 setTimeout(change_group_slider, 4000, params, 'row', 3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17073 setTimeout(change_group_slider, 5000, params, 'row', 4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17074 setTimeout(change_group_slider, 6000, params, 'row', 5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17075 setTimeout(change_group_slider, 7000, params, 'row', 6);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17076 setTimeout(change_group_slider, 8000, params, 'row', 7);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17077 setTimeout(change_group_slider, 9000, params, 'row', 5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17078 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17079
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17080 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17081 return 11000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17082 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17084 function change_group_slider(params, inst_rc, inst_value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17085 $(cgm.params.root + ' .slider_col').slider("value", inst_value / 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17086 change_groups(cgm, inst_rc, inst_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17087 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17089 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17090 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17091 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17092 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17093 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17095 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17096 /* 201 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17097 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17099 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17100 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17101
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17102 module.exports = function play_category() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17103 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17104
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17105 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17106
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17107 var text = 'Row and column categories\ncan be use to reorder\nby double-clicking';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17108 demo_text(params, text, 7000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17110 var inst_element = d3.selectAll(params.root + ' .col_cat_super').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17111 return this.__data__ === 'cat-1';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17112 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17113
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17114 var tmp_pos = d3.select('.col_cat_super').attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17115 var x_trans = Number(tmp_pos.split('(')[1].split(',')[0].replace(')', '')) + 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17116 var y_trans = Number(tmp_pos.split(',')[1].replace(')', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17118 var wait_click = 4000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17119 setTimeout(sim_click, wait_click, params, 'double', x_trans, y_trans);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17121 var wait_reorder = wait_click + 300;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17122 setTimeout(fire_double_click_row, wait_reorder, params, inst_element);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17123 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17124
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17125 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17126 return 8000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17127 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17128
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17129 function fire_double_click_row(params, inst_element) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17130 $(inst_element).d3DblClick();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17131 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17132
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17133 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17134 jQuery.fn.d3DblClick = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17135 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17136 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17137 evt.initMouseEvent("dblclick", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17138 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17139 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17140 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17141 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17142 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17143 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17144 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17145 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17147 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17148 /* 202 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17149 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17150
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17151 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17152 var toggle_play_button = __webpack_require__(203);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17154 module.exports = function play_conclusion() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17156 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17157 var text_1 = "Clustergrammer is built with gene\nexpression data in mind" + " and interfaces\nwith several Ma'ayan lab web tools";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17158 var text_2 = "The example data being visualized is\ngene expression data" + " obtained from the\nCancer Cell Line Encyclopedia";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17159 var text_3 = "For more information please view\nthe help documentation";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17161 setTimeout(demo_text, 0, params, text_1, 4500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17162 setTimeout(demo_text, 4500, params, text_2, 4500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17163 setTimeout(demo_text, 9000, params, text_3, 4500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17165 setTimeout(reset_demo, 14000, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17166 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17167
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17168 function reset_demo(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17170 // prevent more than one demo from running at once
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17171 d3.select(params.root + ' .play_button').classed('running_demo', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17173 toggle_play_button(params, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17174 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17176 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17177 return 12000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17178 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17180 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17181 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17182 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17183 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17184 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17185
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17186 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17187 /* 203 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17188 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17190 module.exports = function toggle_play_button(params, show) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17192 if (show === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17193 d3.select(params.root + ' .play_button').transition().duration(500).style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17194 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17195 d3.select(params.root + ' .play_button').transition().duration(500).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17197 $.unblockUI();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17198 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17199 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17201 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17202 /* 204 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17203 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17204
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17205 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17206 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17208 module.exports = function play_menu_button() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17209 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17210
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17211 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17213 var text = 'View additional controls\nby clicking the menu button';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17214 demo_text(params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17216 // var inst_element = get_row_element(params, 'EGFR');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17217
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17218 // var group_trans = d3.select(inst_element).attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17219
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17220 // var container_trans = d3.select(params.root+' .clust_container')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17221 // .attr('transform')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17222 // .split(',')[1].replace(')','');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17224 // var x_trans = params.viz.norm_labels.width.row * 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17225
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17226 // var row_trans = group_trans.split(',')[1].replace(')','');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17227 // var y_trans = String(Number(row_trans) + Number(container_trans) +
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17228 // params.viz.rect_height/2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17230 var x_trans = Number(d3.select(params.root + ' .expand_button').attr('x').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17231 var y_trans = Number(d3.select(params.root + ' .expand_button').attr('y').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17232
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17233 var wait_click = 3000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17234 var wait_real_click = 3400;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17235 setTimeout(sim_click, wait_click, params, 'single', x_trans, y_trans);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17236 setTimeout(click_menu_button, wait_real_click, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17237 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17239 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17240 return 5000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17241 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17243 function click_menu_button(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17244 $(params.root + ' .expand_button').d3Click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17245 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17247 function get_row_element(params, inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17249 var inst_element = d3.selectAll(params.root + ' .row_label_group').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17250 var inst_data = this.__data__;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17251 return inst_data.name == inst_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17252 })[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17254 return inst_element;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17255 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17257 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17258 jQuery.fn.d3Click = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17259 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17260 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17261 evt.initMouseEvent("click", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17262 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17263 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17264 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17266 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17267 jQuery.fn.d3DblClick = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17268 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17269 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17270 evt.initMouseEvent("dblclick", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17271 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17272 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17273 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17274 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17275 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17276 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17277 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17278 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17279
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17280 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17281 /* 205 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17282 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17283
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17284 var make_play_button = __webpack_require__(206);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17285 var make_demo_text_containers = __webpack_require__(207);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17287 module.exports = function ini_demo() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17289 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17290 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17292 make_play_button(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17293
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17294 var demo_text_size = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17295 make_demo_text_containers(params, demo_text_size);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17296 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17298 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17299 /* 206 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17300 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17302 var position_play_button = __webpack_require__(149);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17303
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17304 module.exports = function make_play_button(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17305
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17306 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17308 if (d3.select(params.root + ' .play_button').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17309
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17310 var play_button = d3.select(params.root + ' .viz_svg').append('g').classed('play_button', true).classed('running_demo', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17311
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17312 position_play_button(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17314 play_button.append('circle').style('r', 45).style('fill', 'white').style('stroke', 'black').style('stroke-width', '3px').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17315
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17316 play_button.append('path').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17317
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17318 var tri_w = 40;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17319 var tri_h = 22;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17320 var tri_offset = 15;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17322 return 'M-' + tri_offset + ',-' + tri_h + ' l ' + tri_w + ',' + tri_h + ' l -' + tri_w + ',' + tri_h + ' z ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17323 }).style('fill', 'black').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17325 // mouseover behavior
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17326 play_button.on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17327 d3.select(this).select('path').style('fill', 'red').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17329 d3.select(this).select('circle').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17330 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17331 d3.select(this).select('path').style('fill', 'black').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17332 d3.select(this).select('circle').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17333 }).on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17334 // running from anonymous function to keep this defined correctly
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17335 cgm.play_demo();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17336 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17337 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17338 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17339
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17340 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17341 /* 207 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17342 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17344 module.exports = function make_demo_text_containers(params, demo_text_size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17346 if (d3.select(params.root + ' .demo_group').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17347
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17348 var clust_transform = d3.select(params.root + ' .clust_container').attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17349 var clust_x = Number(clust_transform.split('(')[1].split(',')[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17350 var clust_y = Number(clust_transform.split(',')[1].replace(')', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17352 // demo text container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17353 var demo_group = d3.select(params.root + ' .viz_svg').append('g').classed('demo_group', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17354 var pos_x = clust_x + 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17355 var pos_y = clust_y + 40;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17356 return 'translate(' + pos_x + ',' + pos_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17357 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17359 demo_group.append('rect').classed('rect_1', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17360
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17361 demo_group.append('rect').classed('rect_2', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17362
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17363 demo_group.append('rect').classed('rect_3', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17365 var shift_height = 1.3 * demo_text_size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17366
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17367 demo_group.append('text').attr('id', 'text_1').attr('font-size', demo_text_size + 'px').attr('font-weight', 1000).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17369 demo_group.append('text').attr('id', 'text_2').attr('font-size', demo_text_size + 'px').attr('font-weight', 1000).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17370 return 'translate(0,' + String(shift_height) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17371 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17373 demo_group.append('text').attr('id', 'text_3').attr('font-size', demo_text_size + 'px').attr('font-weight', 1000).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17374 return 'translate(0,' + String(2 * shift_height) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17375 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17377 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17379 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17380 /* 208 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17381 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17383 var filter_network_using_new_nodes = __webpack_require__(11);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17384 var update_viz_with_network = __webpack_require__(179);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17385
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17386 module.exports = function filter_viz_using_nodes(new_nodes) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17388 var new_network_data = filter_network_using_new_nodes(this.config, new_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17389 update_viz_with_network(this, new_network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17390 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17391
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17392 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17393 /* 209 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17394 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17396 var filter_network_using_new_nodes = __webpack_require__(11);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17397 var update_viz_with_network = __webpack_require__(179);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17398
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17399 module.exports = function filter_viz_using_names(names, external_cgm = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17400
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17401 // names is an object with row and column names that will be used to filter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17402 // the matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17403
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17404 var cgm;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17405 if (external_cgm === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17406 cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17407 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17408 cgm = external_cgm;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17409 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17410
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17411 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17412 var new_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17413 var found_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17414
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17415 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17416
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17417 var orig_nodes = params.inst_nodes[inst_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17418
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17419 if (_.has(names, inst_rc)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17421 if (names[inst_rc].length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17422 var inst_names = names[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17423 found_nodes = $.grep(orig_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17424 return $.inArray(d.name, inst_names) > -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17425 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17426 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17427
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17428 found_nodes = orig_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17429 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17430 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17432 found_nodes = orig_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17433 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17435 new_nodes[inst_rc + '_nodes'] = found_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17436 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17437
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17438 // keep backup of the nodes for resetting filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17439 var inst_row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17440 var inst_col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17442 var new_network_data = filter_network_using_new_nodes(cgm.config, new_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17443
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17444 // takes entire cgm object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17445 // last argument tells it to not preserve categoty colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17446 update_viz_with_network(cgm, new_network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17448 // only keep backup if previous number of nodes were larger than current number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17449 // of nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17450 if (inst_row_nodes.length > cgm.params.inst_nodes.row_nodes.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17451 cgm.params.inst_nodes.row_nodes = inst_row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17452 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17454 if (inst_col_nodes.length > cgm.params.inst_nodes.col_nodes.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17455 cgm.params.inst_nodes.col_nodes = inst_col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17456 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17457 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17459 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17460 /* 210 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17461 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17463 var make_row_cat = __webpack_require__(158);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17464 var calc_viz_params = __webpack_require__(15);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17465 var resize_viz = __webpack_require__(124);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17466 var modify_row_node_cats = __webpack_require__(196);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17468 module.exports = function update_cats(cgm, cat_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17469
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17470 // Only accessible from the cgm API, cat_data is provided by externally
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17471 ///////////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17473 if (cgm.params.cat_update_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17474 cgm.params.cat_update_callback(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17475 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17477 // do not change column category info
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17478 var col_cat_colors = cgm.params.viz.cat_colors.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17479
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17480 modify_row_node_cats(cat_data, cgm.params.network_data.row_nodes, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17481 // modify the current inst copy of nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17482 modify_row_node_cats(cat_data, cgm.params.inst_nodes.row_nodes, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17484 // recalculate the visualization parameters using the updated network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17485 cgm.params = calc_viz_params(cgm.params, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17486
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17487 make_row_cat(cgm, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17488 resize_viz(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17490 cgm.params.new_row_cats = cat_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17492 cgm.params.viz.cat_colors.col = col_cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17493 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17494
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17495 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17496 /* 211 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17497 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17499 var make_row_cat = __webpack_require__(158);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17500 var calc_viz_params = __webpack_require__(15);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17501 var resize_viz = __webpack_require__(124);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17502 var modify_row_node_cats = __webpack_require__(196);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17503 var generate_cat_data = __webpack_require__(212);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17505 module.exports = function reset_cats(run_resize_viz = true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17507 // console.log('RESET CATS')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17509 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17511 var cat_data = generate_cat_data(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17513 // do not change column category info
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17514 var col_cat_colors = cgm.params.viz.cat_colors.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17515
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17516 modify_row_node_cats(cat_data, cgm.params.network_data.row_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17517 // modify the current inst copy of nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17518 modify_row_node_cats(cat_data, cgm.params.inst_nodes.row_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17519
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17520 cgm.params.new_row_cats = cat_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17521 cgm.params.viz.cat_colors.col = col_cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17523 if (run_resize_viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17525 // resize visualizatino
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17526 ////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17527 // recalculate the visualization parameters using the updated network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17528 var predefine_cat_colors = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17529 cgm.params = calc_viz_params(cgm.params, predefine_cat_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17530
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17531 make_row_cat(cgm, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17532 resize_viz(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17533 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17534 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17536 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17537 /* 212 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17538 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17540 module.exports = function generate_cat_data(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17541
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17542 // only row category resetting is supported currently
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17544 // get row_nodes from config, since this is has the original network
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17545 var row_nodes = cgm.config.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17546 var title_sep = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17547
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17548 // contains all the category information stored as an array of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17549 // cat_type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17550 var cat_data = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17551 var cat_type;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17552 var cat_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17553 var found_cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17554 var found_cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17555 var cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17556
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17557 // console.log('generate_cat_data')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17558 // console.log(cgm.params.viz.cat_names.row)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17559
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17560 // get current list of cateories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17561 var check_node = row_nodes[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17562 var node_keys = _.keys(check_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17563 var current_cats = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17564 var tmp_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17565 var tmp_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17566 var cat_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17567 _.each(node_keys, function (inst_prop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17569 if (inst_prop.indexOf('cat-') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17570
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17571 // generate titles from cat info
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17572 tmp_cat = check_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17573
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17574 cat_index = parseInt(inst_prop.split('cat-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17575
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17576 // use given title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17577 if (tmp_cat.indexOf(title_sep) >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17578 tmp_title = tmp_cat.split(title_sep)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17579 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17580 tmp_title = inst_prop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17581 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17582
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17583 // current_cats.push(tmp_title);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17585 current_cats[cat_index] = tmp_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17586 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17587 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17588
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17589 // console.log('current_cats')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17590 // console.log(current_cats)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17591
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17592 // initialize cat_data with categories in the correct order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17593 var all_index = _.keys(current_cats).sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17594
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17595 var inst_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17596 _.each(all_index, function (inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17597
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17598 inst_data = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17599 inst_data.cat_title = current_cats[inst_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17600 inst_data.cats = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17601
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17602 cat_data.push(inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17603 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17605 // // initialize cat_data (keep original order)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17606 // var found_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17607 // _.each(cgm.params.viz.cat_names.row, function(inst_title){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17609 // found_title = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17611 // console.log('inst_title -> ' + String(inst_title))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17613 // if (current_cats.indexOf(inst_title) >= 0){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17614 // found_title = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17615 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17617 // // only track cats that are found in the incoming nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17618 // if (found_title){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17619 // var inst_data = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17620 // inst_data.cat_title = inst_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17621 // inst_data.cats = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17622 // cat_data.push(inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17623 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17625 // });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17626
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17627 // console.log('cat_data after cross checking with current cats')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17628 // console.log(cat_data)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17629 // console.log('-------------------------\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17630
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17631 _.each(row_nodes, function (inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17633 var all_props = _.keys(inst_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17635 _.each(all_props, function (inst_prop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17636
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17637 if (inst_prop.indexOf('cat-') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17639 cat_name = inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17641 cat_index = parseInt(inst_prop.split('cat-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17642
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17643 // default title and name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17644 var cat_title = inst_prop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17645 cat_name = inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17646 var cat_string = inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17647 var cat_row_name = inst_node.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17649 // console.log('cat_string: '+String(cat_string))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17650 // found actual title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17651 if (cat_string.indexOf(title_sep) > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17652 cat_title = cat_string.split(title_sep)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17653 cat_name = cat_string.split(title_sep)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17654 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17655 // cat_title = 'Category-'+String(parseInt(inst_prop.split('-')[1]) + 1)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17656 cat_title = inst_prop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17657 cat_name = cat_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17658 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17660 // console.log('cat_index -> ' + String(cat_index))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17661 // console.log('cat_name '+cat_name)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17662 // console.log('cat_title ' + cat_title)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17663 // console.log('--------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17665 // cat_data is empty
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17666 if (cat_data.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17667
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17668 add_new_cat_type(cat_title, cat_name, cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17669
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17670 // cat_data is not empty
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17671 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17672
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17673 // look for cat_title in cat_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17674 found_cat_title = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17675 _.each(cat_data, function (inst_cat_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17676
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17677 // console.log('inst_cat_data title ' + inst_cat_type.cat_title)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17678
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17679 // check each cat_type object for a matching title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17680 if (cat_title === inst_cat_type.cat_title) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17681 found_cat_title = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17683 // check if cat_name is in cats
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17684 found_cat_name = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17685 _.each(inst_cat_type.cats, function (inst_cat_obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17686
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17687 // found category name, add cat_row_name to members
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17688 if (cat_name === inst_cat_obj.cat_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17689 found_cat_name = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17691 // add cat_row_name to members
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17692 inst_cat_obj.members.push(cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17693 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17694 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17695
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17696 // did not find cat name in cat_type - add cat_info for new
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17697 // category
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17698 if (found_cat_name === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17699 cat_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17700 cat_info.cat_name = cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17701 cat_info.members = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17702 cat_info.members.push(cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17703 inst_cat_type.cats.push(cat_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17704 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17705 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17706 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17708 // did not find category type, initialize category type object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17709 if (found_cat_title === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17710
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17711 // console.log('did not find cat_title: ' + String(cat_title))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17712 // add_new_cat_type(cat_title, cat_name, cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17714 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17715 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17716 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17717 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17718 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17719
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17720 function add_new_cat_type(cat_title, cat_name, cat_row_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17722 // initialize cat_type object to push to cat_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17723 cat_type = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17724 cat_type.cat_title = cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17725 cat_type.cats = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17727 // initialize cat_info (e.g. 'true' category has members [...])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17728 cat_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17729 cat_info.cat_name = cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17730 cat_info.members = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17731 cat_info.members.push(cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17733 cat_type.cats.push(cat_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17734
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17735 cat_data.push(cat_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17736 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17737
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17738 // console.log('RETURNING CAT DATA')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17739 // console.log(cat_data)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17741 return cat_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17742 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17743
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17744 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17745 /* 213 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17746 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17747
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17748 var update_viz_with_view = __webpack_require__(177);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17749 var reset_other_filter_sliders = __webpack_require__(214);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17751 module.exports = function external_update_view(filter_type, inst_state) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17753 // add something to control slider position
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17754 /////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17755
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17756 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17757
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17758 var requested_view = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17759 requested_view[filter_type] = inst_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17760 update_viz_with_view(this, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17762 reset_other_filter_sliders(cgm, filter_type, inst_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17763 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17764
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17765 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17766 /* 214 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17767 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17768
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17769 var make_filter_title = __webpack_require__(215);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17770
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17771 module.exports = function reset_other_filter_sliders(cgm, filter_type, inst_state) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17772
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17773 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17774 var inst_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17775 var reset_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17776
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17777 d3.select(params.root + ' .slider_' + filter_type).attr('current_state', inst_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17778
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17779 _.each(_.keys(params.viz.possible_filters), function (reset_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17780
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17781 if (filter_type.indexOf('row') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17782 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17783 } else if (filter_type.indexOf('col') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17784 inst_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17785 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17786 inst_rc = 'neither';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17787 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17789 if (reset_filter.indexOf('row') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17790 reset_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17791 } else if (reset_filter.indexOf('col') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17792 reset_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17793 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17794 reset_rc = 'neither';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17795 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17797 if (filter_type != reset_filter && inst_rc != 'neither') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17798
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17799 if (inst_rc == reset_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17801 var tmp_title = make_filter_title(params, reset_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17802
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17803 cgm.slider_functions[reset_filter].value(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17804
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17805 d3.select(params.root + ' .title_' + reset_filter).text(tmp_title.text + tmp_title.state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17806
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17807 d3.select(params.root + ' .slider_' + reset_filter).attr('current_state', tmp_title.state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17808 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17809 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17810 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17811
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17812 var filter_title = make_filter_title(params, filter_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17813
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17814 d3.select(params.root + ' .title_' + filter_type).text(filter_title.text + inst_state + filter_title.suffix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17815 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17817 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17818 /* 215 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17819 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17820
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17821 var get_filter_default_state = __webpack_require__(5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17822
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17823 module.exports = function make_filter_title(params, filter_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17824
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17825 var filter_title = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17826 var title = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17827 var type = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17829 filter_title.state = get_filter_default_state(params.viz.filter_data, filter_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17830
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17831 type.top = filter_type.split('_')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17832 type.node = filter_type.split('_')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17833 type.measure = filter_type.split('_')[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17835 if (type.node === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17836 title.node = 'rows';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17837 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17838 title.node = 'columns';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17839 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17841 if (type.top === 'N') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17842 // filter_title.suffix = ' '+title.node;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17843 filter_title.suffix = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17844 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17846 if (type.top === 'pct') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17847 filter_title.suffix = '%';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17848 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17850 if (type.measure == 'sum') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17851 title.measure = 'sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17852 } else if (type.measure == 'var') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17853 title.measure = 'variance';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17854 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17855
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17856 if (type.measure === 'sum') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17857 filter_title.text = 'Top ' + title.node + ' ' + title.measure + ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17858 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17859
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17860 if (type.measure === 'var') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17861 filter_title.text = 'Top ' + title.node + ' ' + title.measure + ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17862 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17863
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17864 // Enrichr specific rules
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17865 if (_.keys(params.viz.possible_filters).indexOf('enr_score_type') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17866 if (type.node === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17867 filter_title.text = 'Top Enriched Terms: ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17868 filter_title.suffix = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17869 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17870 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17872 return filter_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17873 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17875 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17876 /* 216 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17877 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17879 var file_saver = __webpack_require__(217);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17880 var make_matrix_string = __webpack_require__(218);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17881
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17882 module.exports = function save_matrix() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17883
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17884 var saveAs = file_saver();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17885
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17886 var params = this.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17887
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17888 var matrix_string = make_matrix_string(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17889
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17890 var blob = new Blob([matrix_string], { type: 'text/plain;charset=utf-8' });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17891 saveAs(blob, 'clustergrammer.txt');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17892 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17894 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17895 /* 217 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17896 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17897
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17898 module.exports = function file_saver() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17899 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17900 /* FileSaver.js
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17901 * A saveAs() FileSaver implementation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17902 * 2013-01-23
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17903 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17904 * By Eli Grey, http://eligrey.com
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17905 * License: X11/MIT
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17906 * See LICENSE.md
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17907 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17909 /*global self */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17910 /*jslint bitwise: true, regexp: true, confusion: true, es5: true, vars: true, white: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17911 plusplus: true */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17912
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17913 /*! @source http://purl.eligrey.com/github/FileSaver.js/blob/master/FileSaver.js */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17914
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17915 var saveAs = saveAs || navigator.msSaveBlob && navigator.msSaveBlob.bind(navigator) || function (view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17916 "use strict";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17918 var doc = view.document
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17919 // only get URL when necessary in case BlobBuilder.js hasn't overridden it yet
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17920 ,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17921 get_URL = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17922 return view.URL || view.webkitURL || view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17923 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17924 URL = view.URL || view.webkitURL || view,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17925 save_link = doc.createElementNS("http://www.w3.org/1999/xhtml", "a"),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17926 can_use_save_link = "download" in save_link,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17927 click = function (node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17928 var event = doc.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17929 event.initMouseEvent("click", true, false, view, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17930 node.dispatchEvent(event);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17931 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17932 webkit_req_fs = view.webkitRequestFileSystem,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17933 req_fs = view.requestFileSystem || webkit_req_fs || view.mozRequestFileSystem,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17934 throw_outside = function (ex) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17935 (view.setImmediate || view.setTimeout)(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17936 throw ex;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17937 }, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17938 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17939 force_saveable_type = "application/octet-stream",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17940 fs_min_size = 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17941 deletion_queue = [],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17942 process_deletion_queue = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17943 var i = deletion_queue.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17944 while (i--) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17945 var file = deletion_queue[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17946 if (typeof file === "string") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17947 // file is an object URL
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17948 URL.revokeObjectURL(file);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17949 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17950 // file is a File
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17951 file.remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17952 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17953 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17954 deletion_queue.length = 0; // clear queue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17955 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17956 dispatch = function (filesaver, event_types, event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17957 event_types = [].concat(event_types);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17958 var i = event_types.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17959 while (i--) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17960 var listener = filesaver["on" + event_types[i]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17961 if (typeof listener === "function") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17962 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17963 listener.call(filesaver, event || filesaver);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17964 } catch (ex) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17965 throw_outside(ex);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17966 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17967 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17968 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17969 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17970 FileSaver = function (blob, name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17971 // First try a.download, then web filesystem, then object URLs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17972 var filesaver = this,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17973 type = blob.type,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17974 blob_changed = false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17975 object_url,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17976 target_view,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17977 get_object_url = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17978 var object_url = get_URL().createObjectURL(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17979 deletion_queue.push(object_url);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17980 return object_url;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17981 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17982 dispatch_all = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17983 dispatch(filesaver, "writestart progress write writeend".split(" "));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17984 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17985 // on any filesys errors revert to saving with object URLs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17986 ,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17987 fs_error = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17988 // don't create more object URLs than needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17989 if (blob_changed || !object_url) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17990 object_url = get_object_url(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17991 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17992 if (target_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17993 target_view.location.href = object_url;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17994 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17995 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17996 dispatch_all();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17997 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17998 abortable = function (func) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
17999 return function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18000 if (filesaver.readyState !== filesaver.DONE) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18001 return func.apply(this, arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18002 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18003 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18004 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18005 create_if_not_found = { create: true, exclusive: false },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18006 slice;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18007 filesaver.readyState = filesaver.INIT;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18008 if (!name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18009 name = "download";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18010 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18011 if (can_use_save_link) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18012 object_url = get_object_url(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18013 save_link.href = object_url;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18014 save_link.download = name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18015 click(save_link);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18016 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18017 dispatch_all();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18018 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18019 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18020 // Object and web filesystem URLs have a problem saving in Google Chrome when
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18021 // viewed in a tab, so I force save with application/octet-stream
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18022 // http://code.google.com/p/chromium/issues/detail?id=91158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18023 if (view.chrome && type && type !== force_saveable_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18024 slice = blob.slice || blob.webkitSlice;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18025 blob = slice.call(blob, 0, blob.size, force_saveable_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18026 blob_changed = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18027 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18028 // Since I can't be sure that the guessed media type will trigger a download
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18029 // in WebKit, I append .download to the filename.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18030 // https://bugs.webkit.org/show_bug.cgi?id=65440
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18031 if (webkit_req_fs && name !== "download") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18032 name += ".download";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18033 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18034 if (type === force_saveable_type || webkit_req_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18035 target_view = view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18036 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18037 target_view = view.open();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18039 if (!req_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18040 fs_error();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18041 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18042 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18043 fs_min_size += blob.size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18044 req_fs(view.TEMPORARY, fs_min_size, abortable(function (fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18045 fs.root.getDirectory("saved", create_if_not_found, abortable(function (dir) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18046 var save = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18047 dir.getFile(name, create_if_not_found, abortable(function (file) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18048 file.createWriter(abortable(function (writer) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18049 writer.onwriteend = function (event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18050 target_view.location.href = file.toURL();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18051 deletion_queue.push(file);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18052 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18053 dispatch(filesaver, "writeend", event);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18054 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18055 writer.onerror = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18056 var error = writer.error;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18057 if (error.code !== error.ABORT_ERR) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18058 fs_error();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18059 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18060 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18061 "writestart progress write abort".split(" ").forEach(function (event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18062 writer["on" + event] = filesaver["on" + event];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18063 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18064 writer.write(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18065 filesaver.abort = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18066 writer.abort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18067 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18068 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18069 filesaver.readyState = filesaver.WRITING;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18070 }), fs_error);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18071 }), fs_error);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18072 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18073 dir.getFile(name, { create: false }, abortable(function (file) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18074 // delete file if it already exists
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18075 file.remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18076 save();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18077 }), abortable(function (ex) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18078 if (ex.code === ex.NOT_FOUND_ERR) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18079 save();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18080 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18081 fs_error();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18082 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18083 }));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18084 }), fs_error);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18085 }), fs_error);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18086 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18087 FS_proto = FileSaver.prototype,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18088 saveAs = function (blob, name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18089 return new FileSaver(blob, name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18090 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18091 FS_proto.abort = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18092 var filesaver = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18093 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18094 dispatch(filesaver, "abort");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18095 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18096 FS_proto.readyState = FS_proto.INIT = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18097 FS_proto.WRITING = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18098 FS_proto.DONE = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18100 FS_proto.error = FS_proto.onwritestart = FS_proto.onprogress = FS_proto.onwrite = FS_proto.onabort = FS_proto.onerror = FS_proto.onwriteend = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18101
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18102 view.addEventListener("unload", process_deletion_queue, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18103 return saveAs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18104 }(self);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18106 return saveAs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18107 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18108
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18109 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18110 /* 218 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18111 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18113 var make_full_name = __webpack_require__(219);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18115 module.exports = function make_matrix_string(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18116
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18117 var inst_matrix = params.matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18119 // get order indexes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18120 var order_indexes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18121 var inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18122 _.each(['row', 'col'], function (tmp_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18124 var inst_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18125 // row/col names are reversed in saved orders
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18126 if (tmp_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18127 inst_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18128 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18129 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18130 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18131
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18132 // use tmp_rc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18133 inst_name = params.inst_order[tmp_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18135 // use tmp_rc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18136 order_indexes[inst_rc] = inst_matrix.orders[inst_name + '_' + tmp_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18137 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18138
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18139 var matrix_string = '\t';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18140 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18141 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18143 // alternate column entry
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18144 for (var c_i = 0; c_i < order_indexes.col.length; c_i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18146 var inst_index = order_indexes.col[c_i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18148 var inst_col = col_nodes[inst_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18149 var col_name = make_full_name(params, inst_col, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18150
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18151 if (c_i < order_indexes.col.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18152 matrix_string = matrix_string + col_name + '\t';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18153 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18154 matrix_string = matrix_string + col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18155 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18156 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18157
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18158 var row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18159 matrix_string = matrix_string + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18161 _.each(order_indexes.row, function (inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18163 // row names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18164 row_data = inst_matrix.matrix[inst_index].row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18165
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18166 // var row_name = inst_matrix.matrix[inst_index].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18167 var inst_row = row_nodes[inst_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18168
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18169 // var row_name = inst_row.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18170 var row_name = make_full_name(params, inst_row, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18172 matrix_string = matrix_string + row_name + '\t';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18174 // alternate data entry
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18175 for (var r_i = 0; r_i < order_indexes.col.length; r_i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18176
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18177 // get the order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18178 var col_index = order_indexes.col[r_i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18180 if (r_i < order_indexes.col.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18181 matrix_string = matrix_string + String(row_data[col_index].value) + '\t';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18182 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18183 matrix_string = matrix_string + String(row_data[col_index].value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18184 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18185 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18187 matrix_string = matrix_string + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18188 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18190 return matrix_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18191 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18192
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18193 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18194 /* 219 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18195 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18197 module.exports = function make_full_name(params, inst_node, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18199 var cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18200 var inst_name = inst_node.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18201 var num_cats = params.viz.all_cats[inst_rc].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18202
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18203 // make tuple if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18204 if (num_cats > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18206 inst_name = "('" + inst_name + "'";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18208 for (var cat_index = 0; cat_index < num_cats; cat_index++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18209 cat_name = 'cat-' + String(cat_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18210
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18211 inst_name = inst_name + ", '" + String(inst_node[cat_name]) + "'";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18212 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18213
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18214 inst_name = inst_name + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18215 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18217 // always make names strings
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18218 inst_name = String(inst_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18219 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18221 return inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18222 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18224 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18225 /* 220 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18226 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18228 var deactivate_cropping = __webpack_require__(221);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18230 module.exports = function brush_crop_matrix() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18231
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18232 // get rows/cols from brush-extent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18233 // works for differnt brushing directions (e.g. start end sites)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18234
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18235 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18236 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18238 var clust_width = params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18239 var clust_height = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18241 var x = d3.scale.linear().domain([0, clust_width]).range([0, clust_width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18242 var y = d3.scale.linear().domain([0, clust_height]).range([0, clust_height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18244 // make brush group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18245 d3.select(params.root + ' .clust_container').append('g').classed('brush_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18247 cgm.params.is_cropping = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18249 var brush = d3.svg.brush().x(x).y(y).on("brushend", brushend);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18251 d3.select(params.root + ' .brush_group').call(brush);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18252
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18253 function brushend() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18255 // do not display dendro crop buttons when cropping with brushing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18256 d3.select(cgm.params.root + ' .col_dendro_icons_container').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18257 d3.select(cgm.params.root + ' .row_dendro_icons_container').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18258
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18259 var brushing_extent = brush.extent();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18260 var brush_start = brushing_extent[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18261 var brush_end = brushing_extent[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18263 var x_start = brush_start[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18264 var x_end = brush_end[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18266 var y_start = brush_start[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18267 var y_end = brush_end[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18269 if (x_start != x_end && y_start != y_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18271 setTimeout(deactivate_cropping, 500, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18273 // find cropped nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18274 var found_nodes = find_cropped_nodes(x_start, x_end, y_start, y_end, brush_start, brush_end);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18275
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18276 cgm.filter_viz_using_names(found_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18277
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18278 d3.select(params.root + ' .crop_button').style('color', '#337ab7').classed('fa-crop', false).classed('fa-undo', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18279 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18280 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18281
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18282 function find_cropped_nodes(x_start, x_end, y_start, y_end, brush_start, brush_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18283
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18284 // reverse if necessary (depending on how brushing was done)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18285 if (x_start > x_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18286 x_start = brush_end[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18287 x_end = brush_start[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18288 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18289
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18290 if (y_start > y_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18291 y_start = brush_end[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18292 y_end = brush_start[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18293 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18294
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18295 // add room to brushing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18296 y_start = y_start - params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18297 x_start = x_start - params.viz.rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18299 var found_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18300 found_nodes.row = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18301 found_nodes.col = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18303 // d3.selectAll(params.root+' .row_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18304 // .each(function(inst_row){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18305
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18306 // // there is already bound data on the rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18307 // var inst_trans = d3.select(this)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18308 // .attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18309
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18310 // var y_trans = Number(inst_trans.split(',')[1].split(')')[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18311
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18312 // if (y_trans > y_start && y_trans < y_end){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18314 // found_nodes.row.push(inst_row.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18315
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18316 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18317
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18318 // });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18319
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18320 _.each(params.matrix.matrix, function (row_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18321 var y_trans = params.viz.y_scale(row_data.row_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18323 if (y_trans > y_start && y_trans < y_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18324 found_nodes.row.push(row_data.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18325 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18326 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18327
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18328 d3.selectAll(params.root + ' .col_label_text').each(function (inst_col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18329
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18330 // there is already bound data on the cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18331 var inst_trans = d3.select(this).attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18333 var x_trans = Number(inst_trans.split(',')[0].split('(')[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18335 if (x_trans > x_start && x_trans < x_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18336
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18337 found_nodes.col.push(inst_col.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18338 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18339 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18341 return found_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18344 d3.selectAll(params.root + ' .extent').style('opacity', 0.2).style('fill', 'black');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18345 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18347 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18348 /* 221 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18349 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18351 module.exports = function deactivate_cropping(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18352
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18353 d3.select(cgm.params.root + ' .brush_group').transition().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18355 cgm.params.is_cropping = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18356 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18357
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18358 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18359 /* 222 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18360 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18362 var __WEBPACK_AMD_DEFINE_FACTORY__, __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;/*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18363 D3.js Slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18364 Inspired by jQuery UI Slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18365 Copyright (c) 2013, Bjorn Sandvik - http://blog.thematicmapping.org
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18366 BSD license: http://opensource.org/licenses/BSD-3-Clause
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18367 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18368 (function (root, factory) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18369 if (true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18370 // AMD. Register as an anonymous module.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18371 !(__WEBPACK_AMD_DEFINE_ARRAY__ = [__webpack_require__(223)], __WEBPACK_AMD_DEFINE_FACTORY__ = (factory), __WEBPACK_AMD_DEFINE_RESULT__ = (typeof __WEBPACK_AMD_DEFINE_FACTORY__ === 'function' ? (__WEBPACK_AMD_DEFINE_FACTORY__.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__)) : __WEBPACK_AMD_DEFINE_FACTORY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18372 } else if (typeof exports === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18373 if (process.browser) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18374 // Browserify. Import css too using cssify.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18375 require('./d3.slider.css');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18377 // Node. Does not work with strict CommonJS, but
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18378 // only CommonJS-like environments that support module.exports,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18379 // like Node.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18380 module.exports = factory(require('d3'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18381 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18382 // Browser globals (root is window)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18383 root.d3.slider = factory(root.d3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18384 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18385 })(this, function (d3) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18386 return function module() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18387 "use strict";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18389 // Public variables width default settings
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18390
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18391 var min = 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18392 max = 100,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18393 step = 0.01,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18394 animate = false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18395 orientation = "horizontal",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18396 axis = false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18397 margin = 50,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18398 value,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18399 active = 1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18400 snap = false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18401 scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18402
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18403 // Private variables
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18404 var axisScale,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18405 dispatch = d3.dispatch("slide", "slideend"),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18406 formatPercent = d3.format(".2%"),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18407 tickFormat = d3.format(".0"),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18408 handle1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18409 handle2 = null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18410 divRange,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18411 sliderLength;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18412
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18413 function slider(selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18414 selection.each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18416 // Create scale if not defined by user
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18417 if (!scale) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18418 scale = d3.scale.linear().domain([min, max]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18419 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18421 // Start value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18422 value = value || scale.domain()[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18423
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18424 // DIV container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18425 var div = d3.select(this).classed("d3-slider d3-slider-" + orientation, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18427 var drag = d3.behavior.drag();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18428 drag.on('dragend', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18429 dispatch.slideend(d3.event, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18430 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18432 // Slider handle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18433 //if range slider, create two
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18434 // var divRange;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18436 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18437 handle1 = div.append("a").classed("d3-slider-handle", true).attr("xlink:href", "#").attr('id', "handle-one").on("click", stopPropagation).call(drag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18438 handle2 = div.append("a").classed("d3-slider-handle", true).attr('id', "handle-two").attr("xlink:href", "#").on("click", stopPropagation).call(drag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18439 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18440 handle1 = div.append("a").classed("d3-slider-handle", true).attr("xlink:href", "#").attr('id', "handle-one").on("click", stopPropagation).call(drag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18441 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18443 // Horizontal slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18444 if (orientation === "horizontal") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18446 div.on("click", onClickHorizontal);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18448 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18449 divRange = d3.select(this).append('div').classed("d3-slider-range", true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18451 handle1.style("left", formatPercent(scale(value[0])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18452 divRange.style("left", formatPercent(scale(value[0])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18453 drag.on("drag", onDragHorizontal);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18455 var width = 100 - parseFloat(formatPercent(scale(value[1])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18456 handle2.style("left", formatPercent(scale(value[1])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18457 divRange.style("right", width + "%");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18458 drag.on("drag", onDragHorizontal);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18459 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18460 handle1.style("left", formatPercent(scale(value)));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18461 drag.on("drag", onDragHorizontal);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18462 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18463
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18464 sliderLength = parseInt(div.style("width"), 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18465 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18466 // Vertical
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18468 div.on("click", onClickVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18469 drag.on("drag", onDragVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18470 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18471 divRange = d3.select(this).append('div').classed("d3-slider-range-vertical", true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18473 handle1.style("bottom", formatPercent(scale(value[0])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18474 divRange.style("bottom", formatPercent(scale(value[0])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18475 drag.on("drag", onDragVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18477 var top = 100 - parseFloat(formatPercent(scale(value[1])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18478 handle2.style("bottom", formatPercent(scale(value[1])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18479 divRange.style("top", top + "%");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18480 drag.on("drag", onDragVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18481 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18482 handle1.style("bottom", formatPercent(scale(value)));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18483 drag.on("drag", onDragVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18484 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18485
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18486 sliderLength = parseInt(div.style("height"), 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18487 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18489 if (axis) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18490 createAxis(div);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18491 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18492
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18493 function createAxis(dom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18494
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18495 // Create axis if not defined by user
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18496 if (typeof axis === "boolean") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18497
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18498 axis = d3.svg.axis().ticks(Math.round(sliderLength / 100)).tickFormat(tickFormat).orient(orientation === "horizontal" ? "bottom" : "right");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18499 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18501 // Copy slider scale to move from percentages to pixels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18502 axisScale = scale.ticks ? scale.copy().range([0, sliderLength]) : scale.copy().rangePoints([0, sliderLength], 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18503 axis.scale(axisScale);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18505 // Create SVG axis container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18506 var svg = dom.append("svg").classed("d3-slider-axis d3-slider-axis-" + axis.orient(), true).on("click", stopPropagation);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18507
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18508 var g = svg.append("g");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18509
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18510 // Horizontal axis
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18511 if (orientation === "horizontal") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18513 svg.style("margin-left", -margin + "px");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18515 svg.attr({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18516 width: sliderLength + margin * 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18517 height: margin
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18518 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18519
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18520 if (axis.orient() === "top") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18521 svg.style("top", -margin + "px");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18522 g.attr("transform", "translate(" + margin + "," + margin + ")");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18523 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18524 // bottom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18525 g.attr("transform", "translate(" + margin + ",0)");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18526 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18527 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18528 // Vertical
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18529
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18530 svg.style("top", -margin + "px");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18532 svg.attr({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18533 width: margin,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18534 height: sliderLength + margin * 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18535 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18536
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18537 if (axis.orient() === "left") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18538 svg.style("left", -margin + "px");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18539 g.attr("transform", "translate(" + margin + "," + margin + ")");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18540 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18541 // right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18542 g.attr("transform", "translate(" + 0 + "," + margin + ")");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18543 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18544 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18546 g.call(axis);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18547 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18549 function onClickHorizontal() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18550 if (toType(value) != "array") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18551 var pos = Math.max(0, Math.min(sliderLength, d3.event.offsetX || d3.event.layerX));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18552 moveHandle(scale.invert ? stepValue(scale.invert(pos / sliderLength)) : nearestTick(pos / sliderLength));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18553 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18554 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18556 function onClickVertical() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18557 if (toType(value) != "array") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18558 var pos = sliderLength - Math.max(0, Math.min(sliderLength, d3.event.offsetY || d3.event.layerY));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18559 moveHandle(scale.invert ? stepValue(scale.invert(pos / sliderLength)) : nearestTick(pos / sliderLength));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18560 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18561 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18562
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18563 function onDragHorizontal() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18564 if (d3.event.sourceEvent.target.id === "handle-one") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18565 active = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18566 } else if (d3.event.sourceEvent.target.id == "handle-two") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18567 active = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18568 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18569 var pos = Math.max(0, Math.min(sliderLength, d3.event.x));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18570 moveHandle(scale.invert ? stepValue(scale.invert(pos / sliderLength)) : nearestTick(pos / sliderLength));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18571 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18572
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18573 function onDragVertical() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18574 if (d3.event.sourceEvent.target.id === "handle-one") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18575 active = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18576 } else if (d3.event.sourceEvent.target.id == "handle-two") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18577 active = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18578 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18579 var pos = sliderLength - Math.max(0, Math.min(sliderLength, d3.event.y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18580 moveHandle(scale.invert ? stepValue(scale.invert(pos / sliderLength)) : nearestTick(pos / sliderLength));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18581 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18582
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18583 function stopPropagation() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18584 d3.event.stopPropagation();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18585 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18586 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18587 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18588
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18589 // Move slider handle on click/drag
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18590 function moveHandle(newValue) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18591 var currentValue = toType(value) == "array" && value.length == 2 ? value[active - 1] : value,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18592 oldPos = formatPercent(scale(stepValue(currentValue))),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18593 newPos = formatPercent(scale(stepValue(newValue))),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18594 position = orientation === "horizontal" ? "left" : "bottom";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18595 if (oldPos !== newPos) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18596
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18597 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18598 value[active - 1] = newValue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18599 if (d3.event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18600 dispatch.slide(d3.event, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18601 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18602 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18603 if (d3.event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18604 dispatch.slide(d3.event.sourceEvent || d3.event, value = newValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18605 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18606 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18607
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18608 if (value[0] >= value[1]) return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18609 if (active === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18610 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18611 position === "left" ? divRange.style("left", newPos) : divRange.style("bottom", newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18612 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18614 if (animate) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18615 handle1.transition().styleTween(position, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18616 return d3.interpolate(oldPos, newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18617 }).duration(typeof animate === "number" ? animate : 250);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18618 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18619 handle1.style(position, newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18620 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18621 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18622
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18623 var width = 100 - parseFloat(newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18624 var top = 100 - parseFloat(newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18625
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18626 position === "left" ? divRange.style("right", width + "%") : divRange.style("top", top + "%");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18628 if (animate) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18629 handle2.transition().styleTween(position, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18630 return d3.interpolate(oldPos, newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18631 }).duration(typeof animate === "number" ? animate : 250);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18632 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18633 handle2.style(position, newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18634 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18635 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18636 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18637 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18639 // Calculate nearest step value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18640 function stepValue(val) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18642 if (val === scale.domain()[0] || val === scale.domain()[1]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18643 return val;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18644 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18646 var alignValue = val;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18647 if (snap) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18648 alignValue = nearestTick(scale(val));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18649 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18650 var valModStep = (val - scale.domain()[0]) % step;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18651 alignValue = val - valModStep;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18653 if (Math.abs(valModStep) * 2 >= step) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18654 alignValue += valModStep > 0 ? step : -step;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18655 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18656 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18658 return alignValue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18659 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18661 // Find the nearest tick
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18662 function nearestTick(pos) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18663 var ticks = scale.ticks ? scale.ticks() : scale.domain();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18664 var dist = ticks.map(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18665 return pos - scale(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18666 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18667 var i = -1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18668 index = 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18669 r = scale.ticks ? scale.range()[1] : scale.rangeExtent()[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18670 do {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18671 i++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18672 if (Math.abs(dist[i]) < r) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18673 r = Math.abs(dist[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18674 index = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18675 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18676 } while (dist[i] > 0 && i < dist.length - 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18678 return ticks[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18679 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18681 // Return the type of an object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18682 function toType(v) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18683 return {}.toString.call(v).match(/\s([a-zA-Z]+)/)[1].toLowerCase();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18684 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18685
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18686 // Getter/setter functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18687 slider.min = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18688 if (!arguments.length) return min;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18689 min = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18690 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18691 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18693 slider.max = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18694 if (!arguments.length) return max;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18695 max = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18696 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18697 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18698
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18699 slider.step = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18700 if (!arguments.length) return step;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18701 step = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18702 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18703 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18705 slider.animate = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18706 if (!arguments.length) return animate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18707 animate = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18708 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18709 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18710
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18711 slider.orientation = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18712 if (!arguments.length) return orientation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18713 orientation = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18714 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18715 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18716
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18717 slider.axis = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18718 if (!arguments.length) return axis;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18719 axis = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18720 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18721 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18723 slider.margin = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18724 if (!arguments.length) return margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18725 margin = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18726 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18727 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18729 slider.value = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18730 if (!arguments.length) return value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18731 if (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18732 moveHandle(stepValue(_));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18733 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18734 value = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18735 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18736 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18737
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18738 slider.snap = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18739 if (!arguments.length) return snap;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18740 snap = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18741 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18742 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18743
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18744 slider.scale = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18745 if (!arguments.length) return scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18746 scale = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18747 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18748 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18749
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18750 d3.rebind(slider, dispatch, "on");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18751
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18752 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18753 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18754 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18755
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18756 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18757 /* 223 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18758 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18760 module.exports = d3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18762 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18763 /* 224 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18764 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18765
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18766 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18767 * Simple, lightweight, usable local autocomplete library for modern browsers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18768 * Because there weren’t enough autocomplete scripts in the world? Because I’m completely insane and have NIH syndrome? Probably both. :P
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18769 * @author Lea Verou http://leaverou.github.io/awesomplete
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18770 * MIT license
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18771 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18772
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18773 (function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18775 var _ = function (input, o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18776 var me = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18778 // Setup
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18780 this.input = $(input);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18781 this.input.setAttribute("autocomplete", "off");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18782 this.input.setAttribute("aria-autocomplete", "list");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18783
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18784 o = o || {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18785
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18786 configure(this, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18787 minChars: 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18788 maxItems: 10,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18789 autoFirst: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18790 data: _.DATA,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18791 filter: _.FILTER_CONTAINS,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18792 sort: _.SORT_BYLENGTH,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18793 item: _.ITEM,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18794 replace: _.REPLACE
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18795 }, o);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18797 this.index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18798
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18799 // Create necessary elements
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18801 this.container = $.create("div", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18802 className: "awesomplete",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18803 around: input
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18804 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18806 this.ul = $.create("ul", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18807 hidden: "hidden",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18808 inside: this.container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18809 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18811 this.status = $.create("span", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18812 className: "visually-hidden",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18813 role: "status",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18814 "aria-live": "assertive",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18815 "aria-relevant": "additions",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18816 inside: this.container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18817 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18818
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18819 // Bind events
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18820
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18821 $.bind(this.input, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18822 "input": this.evaluate.bind(this),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18823 "blur": this.close.bind(this, { reason: "blur" }),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18824 "keydown": function (evt) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18825 var c = evt.keyCode;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18826
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18827 // If the dropdown `ul` is in view, then act on keydown for the following keys:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18828 // Enter / Esc / Up / Down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18829 if (me.opened) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18830 if (c === 13 && me.selected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18831 // Enter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18832 evt.preventDefault();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18833 me.select();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18834 } else if (c === 27) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18835 // Esc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18836 me.close({ reason: "esc" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18837 } else if (c === 38 || c === 40) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18838 // Down/Up arrow
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18839 evt.preventDefault();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18840 me[c === 38 ? "previous" : "next"]();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18841 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18842 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18843 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18844 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18846 $.bind(this.input.form, { "submit": this.close.bind(this, { reason: "submit" }) });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18848 $.bind(this.ul, { "mousedown": function (evt) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18849 var li = evt.target;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18850
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18851 if (li !== this) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18853 while (li && !/li/i.test(li.nodeName)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18854 li = li.parentNode;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18855 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18856
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18857 if (li && evt.button === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18858 // Only select on left click
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18859 evt.preventDefault();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18860 me.select(li, evt.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18861 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18862 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18863 } });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18865 if (this.input.hasAttribute("list")) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18866 this.list = "#" + this.input.getAttribute("list");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18867 this.input.removeAttribute("list");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18868 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18869 this.list = this.input.getAttribute("data-list") || o.list || [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18870 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18872 _.all.push(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18873 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18875 _.prototype = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18876 set list(list) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18877 if (Array.isArray(list)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18878 this._list = list;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18879 } else if (typeof list === "string" && list.indexOf(",") > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18880 this._list = list.split(/\s*,\s*/);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18881 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18882 // Element or CSS selector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18883 list = $(list);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18885 if (list && list.children) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18886 var items = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18887 slice.apply(list.children).forEach(function (el) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18888 if (!el.disabled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18889 var text = el.textContent.trim();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18890 var value = el.value || text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18891 var label = el.label || text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18892 if (value !== "") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18893 items.push({ label: label, value: value });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18894 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18895 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18896 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18897 this._list = items;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18898 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18899 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18900
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18901 if (document.activeElement === this.input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18902 this.evaluate();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18903 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18904 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18906 get selected() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18907 return this.index > -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18908 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18910 get opened() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18911 return !this.ul.hasAttribute("hidden");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18912 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18914 close: function (o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18915 if (!this.opened) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18916 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18917 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18919 this.ul.setAttribute("hidden", "");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18920 this.index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18922 $.fire(this.input, "awesomplete-close", o || {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18923 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18925 open: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18926 this.ul.removeAttribute("hidden");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18928 if (this.autoFirst && this.index === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18929 this.goto(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18930 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18932 $.fire(this.input, "awesomplete-open");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18933 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18935 next: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18936 var count = this.ul.children.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18938 this.goto(this.index < count - 1 ? this.index + 1 : -1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18939 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18941 previous: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18942 var count = this.ul.children.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18943
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18944 this.goto(this.selected ? this.index - 1 : count - 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18945 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18946
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18947 // Should not be used, highlights specific item without any checks!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18948 goto: function (i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18949 var lis = this.ul.children;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18950
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18951 if (this.selected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18952 lis[this.index].setAttribute("aria-selected", "false");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18953 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18954
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18955 this.index = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18956
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18957 if (i > -1 && lis.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18958 lis[i].setAttribute("aria-selected", "true");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18959 this.status.textContent = lis[i].textContent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18961 $.fire(this.input, "awesomplete-highlight", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18962 text: this.suggestions[this.index]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18963 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18964 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18965 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18967 select: function (selected, origin) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18968 if (selected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18969 this.index = $.siblingIndex(selected);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18970 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18971 selected = this.ul.children[this.index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18972 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18973
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18974 if (selected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18975 var suggestion = this.suggestions[this.index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18977 var allowed = $.fire(this.input, "awesomplete-select", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18978 text: suggestion,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18979 origin: origin || selected
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18980 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18981
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18982 if (allowed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18983 this.replace(suggestion);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18984 this.close({ reason: "select" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18985 $.fire(this.input, "awesomplete-selectcomplete", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18986 text: suggestion
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18987 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18988 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18989 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18990 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18992 evaluate: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18993 var me = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18994 var value = this.input.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18996 if (value.length >= this.minChars && this._list.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18997 this.index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18998 // Populate list with options that match
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
18999 this.ul.innerHTML = "";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19001 this.suggestions = this._list.map(function (item) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19002 return new Suggestion(me.data(item, value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19003 }).filter(function (item) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19004 return me.filter(item, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19005 }).sort(this.sort).slice(0, this.maxItems);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19007 this.suggestions.forEach(function (text) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19008 me.ul.appendChild(me.item(text, value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19009 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19010
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19011 if (this.ul.children.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19012 this.close({ reason: "nomatches" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19013 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19014 this.open();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19015 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19016 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19017 this.close({ reason: "nomatches" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19018 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19019 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19020 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19022 // Static methods/properties
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19024 _.all = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19026 _.FILTER_CONTAINS = function (text, input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19027 return RegExp($.regExpEscape(input.trim()), "i").test(text);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19028 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19029
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19030 _.FILTER_STARTSWITH = function (text, input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19031 return RegExp("^" + $.regExpEscape(input.trim()), "i").test(text);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19032 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19033
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19034 _.SORT_BYLENGTH = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19035 if (a.length !== b.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19036 return a.length - b.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19037 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19038
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19039 return a < b ? -1 : 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19040 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19042 _.ITEM = function (text, input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19043 var html = input === '' ? text : text.replace(RegExp($.regExpEscape(input.trim()), "gi"), "<mark>$&</mark>");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19044 return $.create("li", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19045 innerHTML: html,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19046 "aria-selected": "false"
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19047 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19048 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19049
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19050 _.REPLACE = function (text) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19051 this.input.value = text.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19052 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19054 _.DATA = function (item /*, input*/) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19055 return item;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19056 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19058 // Private functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19060 function Suggestion(data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19061 var o = Array.isArray(data) ? { label: data[0], value: data[1] } : typeof data === "object" && "label" in data && "value" in data ? data : { label: data, value: data };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19062
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19063 this.label = o.label || o.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19064 this.value = o.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19065 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19066 Object.defineProperty(Suggestion.prototype = Object.create(String.prototype), "length", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19067 get: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19068 return this.label.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19069 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19070 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19071 Suggestion.prototype.toString = Suggestion.prototype.valueOf = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19072 return "" + this.label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19073 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19074
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19075 function configure(instance, properties, o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19076 for (var i in properties) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19077 var initial = properties[i],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19078 attrValue = instance.input.getAttribute("data-" + i.toLowerCase());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19079
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19080 if (typeof initial === "number") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19081 instance[i] = parseInt(attrValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19082 } else if (initial === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19083 // Boolean options must be false by default anyway
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19084 instance[i] = attrValue !== null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19085 } else if (initial instanceof Function) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19086 instance[i] = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19087 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19088 instance[i] = attrValue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19089 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19090
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19091 if (!instance[i] && instance[i] !== 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19092 instance[i] = i in o ? o[i] : initial;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19093 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19094 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19095 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19097 // Helpers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19099 var slice = Array.prototype.slice;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19100
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19101 function $(expr, con) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19102 return typeof expr === "string" ? (con || document).querySelector(expr) : expr || null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19103 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19104
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19105 function $$(expr, con) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19106 return slice.call((con || document).querySelectorAll(expr));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19107 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19108
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19109 $.create = function (tag, o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19110 var element = document.createElement(tag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19111
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19112 for (var i in o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19113 var val = o[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19115 if (i === "inside") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19116 $(val).appendChild(element);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19117 } else if (i === "around") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19118 var ref = $(val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19119 ref.parentNode.insertBefore(element, ref);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19120 element.appendChild(ref);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19121 } else if (i in element) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19122 element[i] = val;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19123 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19124 element.setAttribute(i, val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19125 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19126 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19128 return element;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19129 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19131 $.bind = function (element, o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19132 if (element) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19133 for (var event in o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19134 var callback = o[event];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19135
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19136 event.split(/\s+/).forEach(function (event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19137 element.addEventListener(event, callback);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19138 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19139 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19140 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19141 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19143 $.fire = function (target, type, properties) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19144 var evt = document.createEvent("HTMLEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19146 evt.initEvent(type, true, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19148 for (var j in properties) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19149 evt[j] = properties[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19150 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19152 return target.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19153 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19155 $.regExpEscape = function (s) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19156 return s.replace(/[-\\^$*+?.()|[\]{}]/g, "\\$&");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19157 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19159 $.siblingIndex = function (el) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19160 /* eslint-disable no-cond-assign */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19161 for (var i = 0; el = el.previousElementSibling; i++);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19162 return i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19163 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19165 // Initialization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19167 function init() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19168 $$("input.awesomplete").forEach(function (input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19169 new _(input);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19170 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19171 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19173 // Are we in a browser? Check for Document constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19174 if (typeof Document !== "undefined") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19175 // DOM already loaded?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19176 if (document.readyState !== "loading") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19177 init();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19178 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19179 // Wait for it
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19180 document.addEventListener("DOMContentLoaded", init);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19181 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19182 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19183
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19184 _.$ = $;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19185 _.$$ = $$;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19187 // Make sure to export Awesomplete on self when in a browser
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19188 if (typeof self !== "undefined") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19189 self.Awesomplete = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19190 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19192 // Expose Awesomplete as a CJS module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19193 if (typeof module === "object" && module.exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19194 module.exports = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19195 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19197 return _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19198 })();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19199
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19200 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19201 /* 225 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19202 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19204 // style-loader: Adds some css to the DOM by adding a <style> tag
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19206 // load the styles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19207 var content = __webpack_require__(226);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19208 if(typeof content === 'string') content = [[module.id, content, '']];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19209 // add the styles to the DOM
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19210 var update = __webpack_require__(228)(content, {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19211 if(content.locals) module.exports = content.locals;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19212 // Hot Module Replacement
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19213 if(false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19214 // When the styles change, update the <style> tags
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19215 if(!content.locals) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19216 module.hot.accept("!!./../../node_modules/css-loader/index.js!./d3.slider.css", function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19217 var newContent = require("!!./../../node_modules/css-loader/index.js!./d3.slider.css");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19218 if(typeof newContent === 'string') newContent = [[module.id, newContent, '']];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19219 update(newContent);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19220 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19222 // When the module is disposed, remove the <style> tags
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19223 module.hot.dispose(function() { update(); });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19224 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19225
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19226 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19227 /* 226 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19228 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19230 exports = module.exports = __webpack_require__(227)();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19231 // imports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19232
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19234 // module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19235 exports.push([module.id, ".d3-slider {\n position: relative;\n font-family: Verdana,Arial,sans-serif;\n font-size: 1.1em;\n border: 1px solid #aaaaaa;\n z-index: 2;\n}\n\n.d3-slider-horizontal {\n height: .8em;\n} \n\n.d3-slider-range {\n background:#2980b9;\n left:0px;\n right:0px;\n height: 0.8em;\n position: absolute;\n}\n\n.d3-slider-range-vertical {\n background:#2980b9;\n left:0px;\n right:0px;\n position: absolute;\n top:0;\n}\n\n.d3-slider-vertical {\n width: .8em;\n height: 100px;\n} \n\n.d3-slider-handle {\n position: absolute;\n width: 1.2em;\n height: 1.2em;\n border: 1px solid #d3d3d3;\n border-radius: 4px;\n background: #eee;\n background: linear-gradient(to bottom, #eee 0%, #ddd 100%);\n z-index: 3;\n}\n\n.d3-slider-handle:hover {\n border: 1px solid #999999;\n}\n\n.d3-slider-horizontal .d3-slider-handle {\n top: -.3em;\n margin-left: -.6em;\n}\n\n.d3-slider-axis {\n position: relative;\n z-index: 1; \n}\n\n.d3-slider-axis-bottom {\n top: .8em;\n}\n\n.d3-slider-axis-right {\n left: .8em;\n}\n\n.d3-slider-axis path {\n stroke-width: 0;\n fill: none;\n}\n\n.d3-slider-axis line {\n fill: none;\n stroke: #aaa;\n shape-rendering: crispEdges;\n}\n\n.d3-slider-axis text {\n font-size: 11px;\n}\n\n.d3-slider-vertical .d3-slider-handle {\n left: -.25em;\n margin-left: 0;\n margin-bottom: -.6em; \n}", ""]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19237 // exports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19240 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19241 /* 227 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19242 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19244 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19245 MIT License http://www.opensource.org/licenses/mit-license.php
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19246 Author Tobias Koppers @sokra
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19247 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19248 // css base code, injected by the css-loader
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19249 module.exports = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19250 var list = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19251
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19252 // return the list of modules as css string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19253 list.toString = function toString() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19254 var result = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19255 for (var i = 0; i < this.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19256 var item = this[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19257 if (item[2]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19258 result.push("@media " + item[2] + "{" + item[1] + "}");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19259 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19260 result.push(item[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19261 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19262 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19263 return result.join("");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19264 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19266 // import a list of modules into the list
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19267 list.i = function (modules, mediaQuery) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19268 if (typeof modules === "string") modules = [[null, modules, ""]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19269 var alreadyImportedModules = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19270 for (var i = 0; i < this.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19271 var id = this[i][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19272 if (typeof id === "number") alreadyImportedModules[id] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19273 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19274 for (i = 0; i < modules.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19275 var item = modules[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19276 // skip already imported module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19277 // this implementation is not 100% perfect for weird media query combinations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19278 // when a module is imported multiple times with different media queries.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19279 // I hope this will never occur (Hey this way we have smaller bundles)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19280 if (typeof item[0] !== "number" || !alreadyImportedModules[item[0]]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19281 if (mediaQuery && !item[2]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19282 item[2] = mediaQuery;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19283 } else if (mediaQuery) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19284 item[2] = "(" + item[2] + ") and (" + mediaQuery + ")";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19285 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19286 list.push(item);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19287 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19288 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19289 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19290 return list;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19291 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19293 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19294 /* 228 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19295 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19296
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19297 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19298 MIT License http://www.opensource.org/licenses/mit-license.php
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19299 Author Tobias Koppers @sokra
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19300 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19301 var stylesInDom = {},
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19302 memoize = function(fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19303 var memo;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19304 return function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19305 if (typeof memo === "undefined") memo = fn.apply(this, arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19306 return memo;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19307 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19308 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19309 isOldIE = memoize(function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19310 return /msie [6-9]\b/.test(window.navigator.userAgent.toLowerCase());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19311 }),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19312 getHeadElement = memoize(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19313 return document.head || document.getElementsByTagName("head")[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19314 }),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19315 singletonElement = null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19316 singletonCounter = 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19317 styleElementsInsertedAtTop = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19319 module.exports = function(list, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19320 if(false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19321 if(typeof document !== "object") throw new Error("The style-loader cannot be used in a non-browser environment");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19322 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19323
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19324 options = options || {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19325 // Force single-tag solution on IE6-9, which has a hard limit on the # of <style>
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19326 // tags it will allow on a page
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19327 if (typeof options.singleton === "undefined") options.singleton = isOldIE();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19329 // By default, add <style> tags to the bottom of <head>.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19330 if (typeof options.insertAt === "undefined") options.insertAt = "bottom";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19332 var styles = listToStyles(list);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19333 addStylesToDom(styles, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19335 return function update(newList) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19336 var mayRemove = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19337 for(var i = 0; i < styles.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19338 var item = styles[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19339 var domStyle = stylesInDom[item.id];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19340 domStyle.refs--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19341 mayRemove.push(domStyle);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19343 if(newList) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19344 var newStyles = listToStyles(newList);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19345 addStylesToDom(newStyles, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19346 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19347 for(var i = 0; i < mayRemove.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19348 var domStyle = mayRemove[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19349 if(domStyle.refs === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19350 for(var j = 0; j < domStyle.parts.length; j++)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19351 domStyle.parts[j]();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19352 delete stylesInDom[domStyle.id];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19353 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19354 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19355 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19356 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19357
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19358 function addStylesToDom(styles, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19359 for(var i = 0; i < styles.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19360 var item = styles[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19361 var domStyle = stylesInDom[item.id];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19362 if(domStyle) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19363 domStyle.refs++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19364 for(var j = 0; j < domStyle.parts.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19365 domStyle.parts[j](item.parts[j]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19366 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19367 for(; j < item.parts.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19368 domStyle.parts.push(addStyle(item.parts[j], options));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19369 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19370 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19371 var parts = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19372 for(var j = 0; j < item.parts.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19373 parts.push(addStyle(item.parts[j], options));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19374 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19375 stylesInDom[item.id] = {id: item.id, refs: 1, parts: parts};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19377 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19378 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19380 function listToStyles(list) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19381 var styles = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19382 var newStyles = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19383 for(var i = 0; i < list.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19384 var item = list[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19385 var id = item[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19386 var css = item[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19387 var media = item[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19388 var sourceMap = item[3];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19389 var part = {css: css, media: media, sourceMap: sourceMap};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19390 if(!newStyles[id])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19391 styles.push(newStyles[id] = {id: id, parts: [part]});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19392 else
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19393 newStyles[id].parts.push(part);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19394 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19395 return styles;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19396 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19397
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19398 function insertStyleElement(options, styleElement) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19399 var head = getHeadElement();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19400 var lastStyleElementInsertedAtTop = styleElementsInsertedAtTop[styleElementsInsertedAtTop.length - 1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19401 if (options.insertAt === "top") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19402 if(!lastStyleElementInsertedAtTop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19403 head.insertBefore(styleElement, head.firstChild);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19404 } else if(lastStyleElementInsertedAtTop.nextSibling) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19405 head.insertBefore(styleElement, lastStyleElementInsertedAtTop.nextSibling);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19406 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19407 head.appendChild(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19408 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19409 styleElementsInsertedAtTop.push(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19410 } else if (options.insertAt === "bottom") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19411 head.appendChild(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19412 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19413 throw new Error("Invalid value for parameter 'insertAt'. Must be 'top' or 'bottom'.");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19414 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19415 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19416
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19417 function removeStyleElement(styleElement) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19418 styleElement.parentNode.removeChild(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19419 var idx = styleElementsInsertedAtTop.indexOf(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19420 if(idx >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19421 styleElementsInsertedAtTop.splice(idx, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19422 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19423 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19425 function createStyleElement(options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19426 var styleElement = document.createElement("style");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19427 styleElement.type = "text/css";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19428 insertStyleElement(options, styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19429 return styleElement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19430 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19432 function createLinkElement(options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19433 var linkElement = document.createElement("link");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19434 linkElement.rel = "stylesheet";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19435 insertStyleElement(options, linkElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19436 return linkElement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19437 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19439 function addStyle(obj, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19440 var styleElement, update, remove;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19442 if (options.singleton) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19443 var styleIndex = singletonCounter++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19444 styleElement = singletonElement || (singletonElement = createStyleElement(options));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19445 update = applyToSingletonTag.bind(null, styleElement, styleIndex, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19446 remove = applyToSingletonTag.bind(null, styleElement, styleIndex, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19447 } else if(obj.sourceMap &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19448 typeof URL === "function" &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19449 typeof URL.createObjectURL === "function" &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19450 typeof URL.revokeObjectURL === "function" &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19451 typeof Blob === "function" &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19452 typeof btoa === "function") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19453 styleElement = createLinkElement(options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19454 update = updateLink.bind(null, styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19455 remove = function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19456 removeStyleElement(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19457 if(styleElement.href)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19458 URL.revokeObjectURL(styleElement.href);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19459 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19460 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19461 styleElement = createStyleElement(options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19462 update = applyToTag.bind(null, styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19463 remove = function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19464 removeStyleElement(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19465 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19466 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19468 update(obj);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19469
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19470 return function updateStyle(newObj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19471 if(newObj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19472 if(newObj.css === obj.css && newObj.media === obj.media && newObj.sourceMap === obj.sourceMap)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19473 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19474 update(obj = newObj);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19475 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19476 remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19477 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19478 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19479 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19481 var replaceText = (function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19482 var textStore = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19484 return function (index, replacement) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19485 textStore[index] = replacement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19486 return textStore.filter(Boolean).join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19487 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19488 })();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19490 function applyToSingletonTag(styleElement, index, remove, obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19491 var css = remove ? "" : obj.css;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19492
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19493 if (styleElement.styleSheet) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19494 styleElement.styleSheet.cssText = replaceText(index, css);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19495 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19496 var cssNode = document.createTextNode(css);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19497 var childNodes = styleElement.childNodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19498 if (childNodes[index]) styleElement.removeChild(childNodes[index]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19499 if (childNodes.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19500 styleElement.insertBefore(cssNode, childNodes[index]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19501 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19502 styleElement.appendChild(cssNode);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19503 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19504 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19505 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19507 function applyToTag(styleElement, obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19508 var css = obj.css;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19509 var media = obj.media;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19511 if(media) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19512 styleElement.setAttribute("media", media)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19513 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19515 if(styleElement.styleSheet) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19516 styleElement.styleSheet.cssText = css;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19517 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19518 while(styleElement.firstChild) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19519 styleElement.removeChild(styleElement.firstChild);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19520 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19521 styleElement.appendChild(document.createTextNode(css));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19522 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19523 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19525 function updateLink(linkElement, obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19526 var css = obj.css;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19527 var sourceMap = obj.sourceMap;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19528
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19529 if(sourceMap) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19530 // http://stackoverflow.com/a/26603875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19531 css += "\n/*# sourceMappingURL=data:application/json;base64," + btoa(unescape(encodeURIComponent(JSON.stringify(sourceMap)))) + " */";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19532 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19533
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19534 var blob = new Blob([css], { type: "text/css" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19536 var oldSrc = linkElement.href;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19538 linkElement.href = URL.createObjectURL(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19540 if(oldSrc)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19541 URL.revokeObjectURL(oldSrc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19542 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19545 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19546 /* 229 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19547 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19549 // style-loader: Adds some css to the DOM by adding a <style> tag
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19550
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19551 // load the styles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19552 var content = __webpack_require__(230);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19553 if(typeof content === 'string') content = [[module.id, content, '']];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19554 // add the styles to the DOM
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19555 var update = __webpack_require__(228)(content, {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19556 if(content.locals) module.exports = content.locals;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19557 // Hot Module Replacement
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19558 if(false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19559 // When the styles change, update the <style> tags
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19560 if(!content.locals) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19561 module.hot.accept("!!./../css-loader/index.js!./awesomplete.css", function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19562 var newContent = require("!!./../css-loader/index.js!./awesomplete.css");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19563 if(typeof newContent === 'string') newContent = [[module.id, newContent, '']];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19564 update(newContent);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19565 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19566 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19567 // When the module is disposed, remove the <style> tags
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19568 module.hot.dispose(function() { update(); });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19569 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19570
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19571 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19572 /* 230 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19573 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19575 exports = module.exports = __webpack_require__(227)();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19576 // imports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19578
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19579 // module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19580 exports.push([module.id, "[hidden] { display: none; }\n\n.visually-hidden {\n\tposition: absolute;\n\tclip: rect(0, 0, 0, 0);\n}\n\ndiv.awesomplete {\n\tdisplay: inline-block;\n\tposition: relative;\n}\n\ndiv.awesomplete > input {\n\tdisplay: block;\n}\n\ndiv.awesomplete > ul {\n\tposition: absolute;\n\tleft: 0;\n\tz-index: 1;\n\tmin-width: 100%;\n\tbox-sizing: border-box;\n\tlist-style: none;\n\tpadding: 0;\n\tborder-radius: .3em;\n\tmargin: .2em 0 0;\n\tbackground: hsla(0,0%,100%,.9);\n\tbackground: linear-gradient(to bottom right, white, hsla(0,0%,100%,.8));\n\tborder: 1px solid rgba(0,0,0,.3);\n\tbox-shadow: .05em .2em .6em rgba(0,0,0,.2);\n\ttext-shadow: none;\n}\n\ndiv.awesomplete > ul[hidden],\ndiv.awesomplete > ul:empty {\n\tdisplay: none;\n}\n\n@supports (transform: scale(0)) {\n\tdiv.awesomplete > ul {\n\t\ttransition: .3s cubic-bezier(.4,.2,.5,1.4);\n\t\ttransform-origin: 1.43em -.43em;\n\t}\n\t\n\tdiv.awesomplete > ul[hidden],\n\tdiv.awesomplete > ul:empty {\n\t\topacity: 0;\n\t\ttransform: scale(0);\n\t\tdisplay: block;\n\t\ttransition-timing-function: ease;\n\t}\n}\n\n\t/* Pointer */\n\tdiv.awesomplete > ul:before {\n\t\tcontent: \"\";\n\t\tposition: absolute;\n\t\ttop: -.43em;\n\t\tleft: 1em;\n\t\twidth: 0; height: 0;\n\t\tpadding: .4em;\n\t\tbackground: white;\n\t\tborder: inherit;\n\t\tborder-right: 0;\n\t\tborder-bottom: 0;\n\t\t-webkit-transform: rotate(45deg);\n\t\ttransform: rotate(45deg);\n\t}\n\n\tdiv.awesomplete > ul > li {\n\t\tposition: relative;\n\t\tpadding: .2em .5em;\n\t\tcursor: pointer;\n\t}\n\t\n\tdiv.awesomplete > ul > li:hover {\n\t\tbackground: hsl(200, 40%, 80%);\n\t\tcolor: black;\n\t}\n\t\n\tdiv.awesomplete > ul > li[aria-selected=\"true\"] {\n\t\tbackground: hsl(205, 40%, 40%);\n\t\tcolor: white;\n\t}\n\t\n\t\tdiv.awesomplete mark {\n\t\t\tbackground: hsl(65, 100%, 50%);\n\t\t}\n\t\t\n\t\tdiv.awesomplete li:hover mark {\n\t\t\tbackground: hsl(68, 100%, 41%);\n\t\t}\n\t\t\n\t\tdiv.awesomplete li[aria-selected=\"true\"] mark {\n\t\t\tbackground: hsl(86, 100%, 21%);\n\t\t\tcolor: inherit;\n\t\t}", ""]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19581
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19582 // exports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19583
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19585 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19586 /* 231 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19587 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19588
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19589 var ini_sidebar = __webpack_require__(192);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19590 var set_up_filters = __webpack_require__(232);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19591 var set_up_search = __webpack_require__(237);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19592 var set_up_reorder = __webpack_require__(238);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19593 var set_sidebar_ini_view = __webpack_require__(239);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19594 var make_icons = __webpack_require__(240);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19595 var make_modals = __webpack_require__(242);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19596 var set_up_opacity_slider = __webpack_require__(244);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19597 var make_colorbar = __webpack_require__(245);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19598
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19599 /* Represents sidebar with controls.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19600 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19601 module.exports = function sidebar(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19602
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19603 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19605 var sidebar = d3.select(params.root + ' .sidebar_wrapper');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19606
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19607 // console.log('is_expand ',params.viz.is_expand)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19609 if (params.viz.is_expand) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19610 sidebar.style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19611 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19613 sidebar.append('div').classed('title_section', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19615 if (params.sidebar.title != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19616 sidebar.select('.title_section').append('h4')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19617 // .style('margin-left', params.sidebar.title_margin_left+'px')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19618 .style('margin-left', '20px').style('margin-top', '5px').style('margin-bottom', '0px').text(params.sidebar.title);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19619 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19620
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19621 sidebar.append('div').style('padding-right', '2px').classed('about_section', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19622
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19623 if (params.sidebar.about != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19625 sidebar.select('.about_section').append('h5').classed('sidebar_text', true).style('margin-left', '7px').style('margin-top', '5px').style('margin-bottom', '2px').style('text-align', 'justify').html(params.sidebar.about);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19626 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19628 sidebar.append('div').classed('icons_section', true).style('text-align', 'center');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19629
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19630 if (cgm.params.make_modals) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19631 make_modals(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19632 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19633
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19634 if (params.sidebar.icons) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19635 make_icons(cgm, sidebar);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19636 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19637
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19638 set_up_reorder(params, sidebar);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19639
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19640 set_up_search(sidebar, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19642 set_up_opacity_slider(sidebar);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19644 var possible_filter_names = _.keys(params.viz.possible_filters);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19646 if (possible_filter_names.indexOf('enr_score_type') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19647 possible_filter_names.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19648 return a.toLowerCase().localeCompare(b.toLowerCase());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19649 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19650 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19652 cgm.slider_functions = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19654 _.each(possible_filter_names, function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19655 set_up_filters(cgm, inst_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19656 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19658 ini_sidebar(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19660 // when initializing the visualization using a view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19661 if (params.ini_view !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19663 set_sidebar_ini_view(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19665 params.ini_view = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19666 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19667
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19668 make_colorbar(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19669 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19670
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19671 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19672 /* 232 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19673 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19675 var make_slider_filter = __webpack_require__(233);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19676 var make_button_filter = __webpack_require__(236);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19678 module.exports = function set_up_filters(cgm, filter_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19679
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19680 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19681
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19682 var div_filters = d3.select(params.root + ' .sidebar_wrapper').append('div').classed('div_filters', true).style('padding-left', '10px').style('padding-right', '10px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19683
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19684 if (params.viz.possible_filters[filter_type] == 'numerical') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19685 make_slider_filter(cgm, filter_type, div_filters);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19686 } else if (params.viz.possible_filters[filter_type] == 'categorical') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19687 make_button_filter(cgm, filter_type, div_filters);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19688 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19689 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19691 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19692 /* 233 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19693 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19695 var make_filter_title = __webpack_require__(215);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19696 var run_filter_slider = __webpack_require__(234);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19697 var get_filter_default_state = __webpack_require__(5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19698 var get_subset_views = __webpack_require__(12);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19700 d3.slider = __webpack_require__(222);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19701
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19702 module.exports = function make_slider_filter(cgm, filter_type, div_filters) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19703
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19704 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19705 var inst_view = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19706
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19707 var possible_filters = _.keys(params.viz.possible_filters);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19708
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19709 _.each(possible_filters, function (tmp_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19710 if (tmp_filter != filter_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19711 var default_state = get_filter_default_state(params.viz.filter_data, tmp_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19712 inst_view[tmp_filter] = default_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19713 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19714 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19716 var filter_title = make_filter_title(params, filter_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19718 div_filters.append('div').classed('title_' + filter_type, true).classed('sidebar_text', true).classed('slider_description', true).style('margin-top', '5px').style('margin-bottom', '3px').text(filter_title.text + filter_title.state + filter_title.suffix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19719
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19720 div_filters.append('div').classed('slider_' + filter_type, true).classed('slider', true).attr('current_state', filter_title.state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19722 var views = params.network_data.views;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19723
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19724 var available_views = get_subset_views(params, views, inst_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19725
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19726 // sort available views by filter_type value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19727 available_views = available_views.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19728 return b[filter_type] - a[filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19729 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19731 var inst_max = available_views.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19733 var ini_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19734 // change the starting position of the slider if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19735 if (params.requested_view !== null && filter_type in params.requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19737 var inst_filter_value = params.requested_view[filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19739 if (inst_filter_value != 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19741 var found_value = available_views.map(function (e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19742 return e[filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19743 }).indexOf(inst_filter_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19745 if (found_value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19746 ini_value = found_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19747 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19748 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19749 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19751 // Filter Slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19752 //////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19753 var slide_filter_fun = d3.slider().value(ini_value).min(0).max(inst_max).step(1).on('slide', function (evt, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19754 run_filter_slider_db(cgm, filter_type, available_views, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19755 }).on('slideend', function (evt, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19756 run_filter_slider_db(cgm, filter_type, available_views, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19757 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19759 // save slider function in order to reset value later
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19760 cgm.slider_functions[filter_type] = slide_filter_fun;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19762 d3.select(cgm.params.root + ' .slider_' + filter_type).call(slide_filter_fun);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19764 //////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19765
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19766 var run_filter_slider_db = _.debounce(run_filter_slider, 800);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19767 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19768
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19769 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19770 /* 234 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19771 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19772
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19773 var update_viz_with_view = __webpack_require__(177);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19774 var reset_other_filter_sliders = __webpack_require__(214);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19775 var get_current_orders = __webpack_require__(235);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19776 var make_requested_view = __webpack_require__(14);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19778 module.exports = function run_filter_slider(cgm, filter_type, available_views, inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19780 // only update if not running update
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19781 if (d3.select(cgm.params.viz.viz_svg).classed('running_update') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19783 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19785 // get value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19786 var inst_state = available_views[inst_index][filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19787
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19788 reset_other_filter_sliders(cgm, filter_type, inst_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19790 params = get_current_orders(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19792 var requested_view = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19793 requested_view[filter_type] = inst_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19795 requested_view = make_requested_view(params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19797 if (_.has(available_views[0], 'enr_score_type')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19798 var enr_state = d3.select(params.root + ' .toggle_enr_score_type').attr('current_state');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19800 requested_view.enr_score_type = enr_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19801 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19802
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19803 update_viz_with_view(cgm, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19804 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19805 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19806
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19807 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19808 /* 235 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19809 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19811 module.exports = function get_current_orders(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19813 // get current orders
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19814 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19815 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19817 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19818 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19819 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19820 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19821 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19822
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19823 if (d3.select(params.root + ' .toggle_' + other_rc + '_order .active').empty() === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19824
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19825 params.viz.inst_order[inst_rc] = d3.select(params.root + ' .toggle_' + other_rc + '_order').select('.active').attr('name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19826 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19827
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19828 // default to cluster ordering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19829 params.viz.inst_order[inst_rc] = 'clust';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19830 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19831 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19833 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19834 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19835
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19836 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19837 /* 236 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19838 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19839
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19840 // var update_network = require('../network/update_network');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19841 var make_requested_view = __webpack_require__(14);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19842
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19843 module.exports = function make_button_filter(config, params, filter_type, div_filters) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19845 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19846 Enrichr specific code
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19847 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19849 var buttons = div_filters.append('div').classed('categorical_filter', true).classed('toggle_' + filter_type, true).classed('btn-group-vertical', true).style('width', '100%').style('margin-top', '10px').attr('current_state', 'combined_score');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19850
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19851 var filter_options = params.viz.filter_data[filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19853 var button_dict = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19854 'combined_score': 'Combined Score',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19855 'pval': 'P-Value',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19856 'zscore': 'Z-score'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19857 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19859 buttons.selectAll('button').data(filter_options).enter().append('button').attr('type', 'button').classed('btn', true).classed('btn-primary', true).classed('.filter_button', true).classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19860 var is_active = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19861 if (d == 'combined_score') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19862 is_active = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19864 return is_active;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19865 }).attr('name', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19866 return d;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19867 }).html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19868 return button_dict[d];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19869 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19871 $(params.root + ' .categorical_filter .btn').off().click(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19873 d3.selectAll(params.root + ' .categorical_filter .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19875 d3.select(this).classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19877 var inst_state = d3.select(this).attr('name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19879 var requested_view = { 'enr_score_type': inst_state };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19880
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19881 make_requested_view(params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19883 d3.select(params.root + ' .toggle_enr_score_type').attr('current_state', inst_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19884 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19885 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19886
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19887 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19888 /* 237 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19889 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19890
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19891 module.exports = function set_up_search(sidebar, params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19893 var search_container = sidebar.append('div')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19894 // .classed('row',true)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19895 .classed('gene_search_container', true).style('padding-left', '10px').style('padding-right', '10px').style('margin-top', '10px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19897 search_container.append('input').classed('form-control', true).classed('gene_search_box', true).classed('sidebar_text', true).attr('type', 'text').attr('placeholder', params.sidebar.row_search.placeholder).style('height', params.sidebar.row_search.box.height + 'px').style('margin-top', '10px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19898
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19899 search_container.append('div').classed('gene_search_button', true).style('margin-top', '5px').attr('data-toggle', 'buttons').append('button').classed('sidebar_text', true).html('Search').attr('type', 'button').classed('btn', true).classed('btn-primary', true).classed('submit_gene_button', true).style('width', '100%').style('font-size', '14px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19900 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19901
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19902 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19903 /* 238 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19904 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19906 // var get_cat_title = require('../categories/get_cat_title');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19907
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19908 module.exports = function set_up_reorder(params, sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19910 var button_dict;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19911 var tmp_orders;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19912 var rc_dict = { 'row': 'Row', 'col': 'Column', 'both': '' };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19913 var is_active;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19914 var inst_reorder;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19915 // var all_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19916 // var inst_order_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19918 var reorder_section = sidebar.append('div').style('padding-left', '10px').style('padding-right', '10px').classed('reorder_section', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19920 var reorder_types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19921 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19922 reorder_types = ['both'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19923 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19924 reorder_types = ['row', 'col'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19925 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19926
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19927 _.each(reorder_types, function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19929 button_dict = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19930 'clust': 'Cluster',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19931 'rank': 'Rank by Sum',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19932 'rankvar': 'Rank by Variance',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19933 'ini': 'Initial Order',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19934 'alpha': 'Alphabetically'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19935 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19936
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19937 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19938 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19939 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19940 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19941 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19942 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19943
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19944 tmp_orders = Object.keys(params.matrix.orders);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19945
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19946 var possible_orders = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19948 _.each(tmp_orders, function (inst_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19949
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19950 if (inst_name.indexOf(other_rc) > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19951 inst_name = inst_name.replace('_row', '').replace('_col', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19952
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19953 if (inst_name.indexOf('cat_') < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19954 possible_orders.push(inst_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19955 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19956 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19957 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19958
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19959 // specific to Enrichr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19960 if (_.keys(params.viz.filter_data).indexOf('enr_score_type') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19961 possible_orders = ['clust', 'rank'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19962 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19963
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19964 possible_orders = _.uniq(possible_orders);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19965
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19966 possible_orders = possible_orders.sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19968 var reorder_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19969 if (inst_rc != 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19970 reorder_text = ' Order';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19971 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19972 reorder_text = 'Reorder Matrix';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19973 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19975 reorder_section.append('div').classed('sidebar_button_text', true).style('clear', 'both').style('margin-top', '10px').html(rc_dict[inst_rc] + reorder_text);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19977 inst_reorder = reorder_section.append('div').classed('btn-group-vertical', true).style('width', '100%').classed('toggle_' + inst_rc + '_order', true).attr('role', 'group');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19978
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19979 inst_reorder.selectAll('.button').data(possible_orders).enter().append('button').attr('type', 'button').classed('btn', true).classed('btn-primary', true).classed('sidebar_button_text', true).classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19980 is_active = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19981 if (d == params.viz.inst_order[other_rc]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19982 is_active = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19983 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19984 return is_active;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19985 }).attr('name', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19986 return d;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19987 }).html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19988 return button_dict[d];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19989 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19990 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19991 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19992
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19993 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19994 /* 239 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19995 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19997 var make_filter_title = __webpack_require__(215);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
19999 module.exports = function set_sidebar_ini_view(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20001 _.each(_.keys(params.ini_view), function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20002
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20003 // initialize filter slider using ini_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20004 var inst_value = params.ini_view[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20006 var filter_type = params.viz.possible_filters[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20007
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20008 if (filter_type === 'numerical') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20010 if (inst_value != 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20011 inst_value = parseInt(inst_value, 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20012 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20014 if (params.viz.filter_data[inst_filter].indexOf(inst_value) <= -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20015 inst_value = 'all';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20016 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20018 var filter_title = make_filter_title(params, inst_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20020 d3.select(params.root + ' .title_' + inst_filter).text(filter_title.text + inst_value + filter_title.suffix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20022 d3.select(params.root + ' .slider_' + inst_filter).attr('current_state', inst_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20023 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20024
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20025 // set up button initialization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20027 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20028 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20029 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20031 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20032 /* 240 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20033 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20034
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20035 var file_saver = __webpack_require__(217);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20036 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20037 var deactivate_cropping = __webpack_require__(221);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20038 var save_svg_png = __webpack_require__(241);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20039
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20040 module.exports = function make_icons(cgm, sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20042 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20043 // var saveSvgAsPng = save_svg_png();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20044 var saveAs = file_saver();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20046 var row = sidebar.select('.icons_section').style('margin-top', '7px').style('margin-left', '5%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20048 var width_pct = '22%';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20049 var padding_left = '0px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20050 var padding_right = '0px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20051
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20052 row.append('div').classed('clust_icon', true).style('float', 'left').style('width', width_pct).style('padding-left', padding_left).style('padding-right', padding_right).append('i').classed('fa', true).classed('fa-share-alt', true).classed('icon_buttons', true).style('font-size', '25px').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20053 $(params.root + ' .share_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20054 $('.share_url').val(window.location.href);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20055 }).classed('sidebar_tooltip', true).append('span').classed('sidebar_tooltip_text', true).html('Share').style('left', '0%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20056
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20057 row.append('div').classed('clust_icon', true).style('float', 'left').style('width', width_pct).style('padding-left', padding_left).style('padding-right', padding_right).append('i').classed('fa', true).classed('fa-camera', true).classed('icon_buttons', true).style('font-size', '25px').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20058
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20059 $(params.root + ' .picture_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20060 }).classed('sidebar_tooltip', true).append('span').classed('sidebar_tooltip_text', true).html('Take snapshot').style('left', '-100%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20061
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20062 row.append('div').classed('clust_icon', true).style('float', 'left').style('width', width_pct).style('padding-left', padding_left).style('padding-right', padding_right).append('i').classed('fa', true).classed('fa fa-cloud-download', true).classed('icon_buttons', true).style('font-size', '25px').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20063
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20064 cgm.save_matrix();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20065 }).classed('sidebar_tooltip', true).append('span').classed('sidebar_tooltip_text', true).html('Download matrix').style('left', '-200%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20067 row.append('div').classed('clust_icon', true).style('float', 'left').style('width', width_pct).style('padding-left', padding_left).style('padding-right', '-5px').append('i').classed('fa', true).classed('fa-crop', true).classed('crop_button', true).classed('icon_buttons', true).style('font-size', '25px').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20069 // do nothing if dendro filtering has been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20070 if (cgm.params.dendro_filter.row === false && cgm.params.dendro_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20072 var is_crop = d3.select(this).classed('fa-crop');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20073
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20074 var is_undo = d3.select(this).classed('fa-undo');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20075
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20076 // press crop button (can be active/incative)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20077 if (is_crop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20078
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20079 // keep list of names to return to state
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20080 cgm.params.crop_filter_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20081 cgm.params.crop_filter_nodes.row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20082 cgm.params.crop_filter_nodes.col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20084 cgm.brush_crop_matrix();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20085
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20086 if (d3.select(this).classed('active_cropping') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20087
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20088 // set active_cropping (button turns red)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20089 d3.select(this).classed('active_cropping', true).style('color', 'red');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20090 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20091 // deactivate cropping (button turns blue)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20092 d3.select(this).classed('active_cropping', false).style('color', '#337ab7');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20093
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20094 deactivate_cropping(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20095 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20096 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20097
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20098 // press undo button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20099 if (is_undo) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20100
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20101 d3.select(params.root + ' .crop_button').style('color', '#337ab7').classed('fa-crop', true).classed('fa-undo', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20102
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20103 // cgm.filter_viz_using_names(cgm.params.crop_filter_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20104 cgm.filter_viz_using_nodes(cgm.params.crop_filter_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20106 // show dendro crop buttons after brush-cropping has been undone
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20107 d3.select(cgm.params.root + ' .col_dendro_icons_container').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20108 d3.select(cgm.params.root + ' .row_dendro_icons_container').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20109 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20110
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20111 two_translate_zoom(cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20112 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20113 }).classed('sidebar_tooltip', true).append('span').classed('sidebar_tooltip_text', true).html('Crop matrix').style('left', '-400%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20115 // save svg: example from: http://bl.ocks.org/pgiraud/8955139#profile.json
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20116 ////////////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20117 function save_clust_svg() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20119 d3.select(params.root + ' .expand_button').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20121 var html = d3.select(params.root + " .viz_svg").attr("title", "test2").attr("version", 1.1).attr("xmlns", "http://www.w3.org/2000/svg").node().parentNode.innerHTML;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20122
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20123 var blob = new Blob([html], { type: "image/svg+xml" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20124
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20125 saveAs(blob, "clustergrammer.svg");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20126
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20127 d3.select(params.root + ' .expand_button').style('opacity', 0.4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20128 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20130 d3.select(params.root + ' .download_buttons').append('p').append('a').html('Download SVG').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20131 save_clust_svg();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20132 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20134 var svg_id = 'svg_' + params.root.replace('#', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20135
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20136 // save as PNG
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20137 /////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20138 d3.select(params.root + ' .download_buttons').append('p').append('a').html('Download PNG').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20139 d3.select(params.root + ' .expand_button').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20140 // saveSvgAsPng(document.getElementById(svg_id), "clustergrammer.png");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20141 save_svg_png.saveSvgAsPng(document.getElementById(svg_id), "clustergrammer.png");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20142 d3.select(params.root + ' .expand_button').style('opacity', 0.4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20143 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20144 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20146 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20147 /* 241 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20148 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20150 var __WEBPACK_AMD_DEFINE_RESULT__;(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20151 var out$ = typeof exports != 'undefined' && exports || "function" != 'undefined' && {} || this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20153 var doctype = '<?xml version="1.0" standalone="no"?><!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd" [<!ENTITY nbsp "&#160;">]>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20155 function isElement(obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20156 return obj instanceof HTMLElement || obj instanceof SVGElement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20157 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20159 function requireDomNode(el) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20160 if (!isElement(el)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20161 throw new Error('an HTMLElement or SVGElement is required; got ' + el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20162 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20163 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20165 function isExternal(url) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20166 return url && url.lastIndexOf('http', 0) == 0 && url.lastIndexOf(window.location.host) == -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20167 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20168
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20169 function inlineImages(el, callback) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20170 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20172 var images = el.querySelectorAll('image'),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20173 left = images.length,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20174 checkDone = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20175 if (left === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20176 callback();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20177 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20178 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20180 checkDone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20181 for (var i = 0; i < images.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20182 (function (image) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20183 var href = image.getAttributeNS("http://www.w3.org/1999/xlink", "href");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20184 if (href) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20185 if (isExternal(href.value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20186 console.warn("Cannot render embedded images linking to external hosts: " + href.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20187 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20188 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20189 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20190 var canvas = document.createElement('canvas');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20191 var ctx = canvas.getContext('2d');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20192 var img = new Image();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20193 img.crossOrigin = "anonymous";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20194 href = href || image.getAttribute('href');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20195 if (href) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20196 img.src = href;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20197 img.onload = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20198 canvas.width = img.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20199 canvas.height = img.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20200 ctx.drawImage(img, 0, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20201 image.setAttributeNS("http://www.w3.org/1999/xlink", "href", canvas.toDataURL('image/png'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20202 left--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20203 checkDone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20204 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20205 img.onerror = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20206 console.log("Could not load " + href);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20207 left--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20208 checkDone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20209 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20210 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20211 left--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20212 checkDone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20213 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20214 })(images[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20215 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20216 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20217
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20218 function styles(el, options, cssLoadedCallback) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20219 var selectorRemap = options.selectorRemap;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20220 var modifyStyle = options.modifyStyle;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20221 var css = "";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20222 // each font that has extranl link is saved into queue, and processed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20223 // asynchronously
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20224 var fontsQueue = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20225 var sheets = document.styleSheets;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20226 for (var i = 0; i < sheets.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20227 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20228 var rules = sheets[i].cssRules;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20229 } catch (e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20230 console.warn("Stylesheet could not be loaded: " + sheets[i].href);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20231 continue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20232 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20234 if (rules != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20235 for (var j = 0, match; j < rules.length; j++, match = null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20236 var rule = rules[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20237 if (typeof rule.style != "undefined") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20238 var selectorText;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20240 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20241 selectorText = rule.selectorText;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20242 } catch (err) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20243 console.warn('The following CSS rule has an invalid selector: "' + rule + '"', err);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20244 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20246 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20247 if (selectorText) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20248 match = el.querySelector(selectorText);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20249 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20250 } catch (err) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20251 console.warn('Invalid CSS selector "' + selectorText + '"', err);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20252 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20254 if (match) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20255 var selector = selectorRemap ? selectorRemap(rule.selectorText) : rule.selectorText;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20256 var cssText = modifyStyle ? modifyStyle(rule.style.cssText) : rule.style.cssText;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20257 css += selector + " { " + cssText + " }\n";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20258 } else if (rule.cssText.match(/^@font-face/)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20259 // below we are trying to find matches to external link. E.g.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20260 // @font-face {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20261 // // ...
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20262 // src: local('Abel'), url(https://fonts.gstatic.com/s/abel/v6/UzN-iejR1VoXU2Oc-7LsbvesZW2xOQ-xsNqO47m55DA.woff2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20263 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20264 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20265 // This regex will save extrnal link into first capture group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20266 var fontUrlRegexp = /url\(["']?(.+?)["']?\)/;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20267 // TODO: This needs to be changed to support multiple url declarations per font.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20268 var fontUrlMatch = rule.cssText.match(fontUrlRegexp);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20269
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20270 var externalFontUrl = fontUrlMatch && fontUrlMatch[1] || '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20271 var fontUrlIsDataURI = externalFontUrl.match(/^data:/);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20272 if (fontUrlIsDataURI) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20273 // We should ignore data uri - they are already embedded
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20274 externalFontUrl = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20275 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20277 if (externalFontUrl) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20278 // okay, we are lucky. We can fetch this font later
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20279 fontsQueue.push({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20280 text: rule.cssText,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20281 // Pass url regex, so that once font is downladed, we can run `replace()` on it
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20282 fontUrlRegexp: fontUrlRegexp,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20283 format: getFontMimeTypeFromUrl(externalFontUrl),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20284 url: externalFontUrl
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20285 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20286 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20287 // otherwise, use previous logic
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20288 css += rule.cssText + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20289 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20290 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20291 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20292 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20293 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20294 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20296 // Now all css is processed, it's time to handle scheduled fonts
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20297 processFontQueue(fontsQueue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20299 function getFontMimeTypeFromUrl(fontUrl) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20300 var supportedFormats = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20301 'woff2': 'font/woff2',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20302 'woff': 'font/woff',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20303 'otf': 'application/x-font-opentype',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20304 'ttf': 'application/x-font-ttf',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20305 'eot': 'application/vnd.ms-fontobject',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20306 'sfnt': 'application/font-sfnt',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20307 'svg': 'image/svg+xml'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20308 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20309 var extensions = Object.keys(supportedFormats);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20310 for (var i = 0; i < extensions.length; ++i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20311 var extension = extensions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20312 // TODO: This is not bullet proof, it needs to handle edge cases...
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20313 if (fontUrl.indexOf('.' + extension) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20314 return supportedFormats[extension];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20315 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20316 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20317
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20318 // If you see this error message, you probably need to update code above.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20319 console.error('Unknown font format for ' + fontUrl + '; Fonts may not be working correctly');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20320 return 'application/octet-stream';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20321 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20323 function processFontQueue(queue) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20324 if (queue.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20325 // load fonts one by one until we have anything in the queue:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20326 var font = queue.pop();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20327 processNext(font);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20328 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20329 // no more fonts to load.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20330 cssLoadedCallback(css);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20331 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20333 function processNext(font) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20334 // TODO: This could benefit from caching.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20335 var oReq = new XMLHttpRequest();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20336 oReq.addEventListener('load', fontLoaded);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20337 oReq.addEventListener('error', transferFailed);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20338 oReq.addEventListener('abort', transferFailed);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20339 oReq.open('GET', font.url);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20340 oReq.responseType = 'arraybuffer';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20341 oReq.send();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20342
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20343 function fontLoaded() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20344 // TODO: it may be also worth to wait until fonts are fully loaded before
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20345 // attempting to rasterize them. (e.g. use https://developer.mozilla.org/en-US/docs/Web/API/FontFaceSet )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20346 var fontBits = oReq.response;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20347 var fontInBase64 = arrayBufferToBase64(fontBits);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20348 updateFontStyle(font, fontInBase64);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20349 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20351 function transferFailed(e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20352 console.warn('Failed to load font from: ' + font.url);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20353 console.warn(e);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20354 css += font.text + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20355 processFontQueue();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20356 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20357
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20358 function updateFontStyle(font, fontInBase64) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20359 var dataUrl = 'url("data:' + font.format + ';base64,' + fontInBase64 + '")';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20360 css += font.text.replace(font.fontUrlRegexp, dataUrl) + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20362 // schedule next font download on next tick.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20363 setTimeout(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20364 processFontQueue(queue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20365 }, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20366 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20367 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20368 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20370 function arrayBufferToBase64(buffer) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20371 var binary = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20372 var bytes = new Uint8Array(buffer);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20373 var len = bytes.byteLength;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20375 for (var i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20376 binary += String.fromCharCode(bytes[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20377 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20379 return window.btoa(binary);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20380 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20381 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20383 function getDimension(el, clone, dim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20384 var v = el.viewBox && el.viewBox.baseVal && el.viewBox.baseVal[dim] || clone.getAttribute(dim) !== null && !clone.getAttribute(dim).match(/%$/) && parseInt(clone.getAttribute(dim)) || el.getBoundingClientRect()[dim] || parseInt(clone.style[dim]) || parseInt(window.getComputedStyle(el).getPropertyValue(dim));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20385 return typeof v === 'undefined' || v === null || isNaN(parseFloat(v)) ? 0 : v;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20386 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20388 function reEncode(data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20389 data = encodeURIComponent(data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20390 data = data.replace(/%([0-9A-F]{2})/g, function (match, p1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20391 var c = String.fromCharCode('0x' + p1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20392 return c === '%' ? '%25' : c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20393 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20394 return decodeURIComponent(data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20395 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20396
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20397 out$.prepareSvg = function (el, options, cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20398 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20400 options = options || {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20401 options.scale = options.scale || 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20402 options.responsive = options.responsive || false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20403 var xmlns = "http://www.w3.org/2000/xmlns/";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20405 inlineImages(el, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20406 var outer = document.createElement("div");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20407 var clone = el.cloneNode(true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20408 var width, height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20409 if (el.tagName == 'svg') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20410 width = options.width || getDimension(el, clone, 'width');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20411 height = options.height || getDimension(el, clone, 'height');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20412 } else if (el.getBBox) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20413 var box = el.getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20414 width = box.x + box.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20415 height = box.y + box.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20416 clone.setAttribute('transform', clone.getAttribute('transform').replace(/translate\(.*?\)/, ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20418 var svg = document.createElementNS('http://www.w3.org/2000/svg', 'svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20419 svg.appendChild(clone);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20420 clone = svg;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20421 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20422 console.error('Attempted to render non-SVG element', el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20423 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20424 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20425
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20426 clone.setAttribute("version", "1.1");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20427 if (!clone.getAttribute('xmlns')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20428 clone.setAttributeNS(xmlns, "xmlns", "http://www.w3.org/2000/svg");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20429 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20430 if (!clone.getAttribute('xmlns:xlink')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20431 clone.setAttributeNS(xmlns, "xmlns:xlink", "http://www.w3.org/1999/xlink");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20432 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20434 if (options.responsive) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20435 clone.removeAttribute('width');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20436 clone.removeAttribute('height');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20437 clone.setAttribute('preserveAspectRatio', 'xMinYMin meet');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20438 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20439 clone.setAttribute("width", width * options.scale);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20440 clone.setAttribute("height", height * options.scale);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20441 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20443 clone.setAttribute("viewBox", [options.left || 0, options.top || 0, width, height].join(" "));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20444
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20445 var fos = clone.querySelectorAll('foreignObject > *');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20446 for (var i = 0; i < fos.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20447 if (!fos[i].getAttribute('xmlns')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20448 fos[i].setAttributeNS(xmlns, "xmlns", "http://www.w3.org/1999/xhtml");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20449 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20450 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20452 outer.appendChild(clone);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20454 // In case of custom fonts we need to fetch font first, and then inline
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20455 // its url into data-uri format (encode as base64). That's why style
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20456 // processing is done asynchonously. Once all inlining is finshed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20457 // cssLoadedCallback() is called.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20458 styles(el, options, cssLoadedCallback);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20460 function cssLoadedCallback(css) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20461 // here all fonts are inlined, so that we can render them properly.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20462 var s = document.createElement('style');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20463 s.setAttribute('type', 'text/css');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20464 s.innerHTML = "<![CDATA[\n" + css + "\n]]>";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20465 var defs = document.createElement('defs');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20466 defs.appendChild(s);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20467 clone.insertBefore(defs, clone.firstChild);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20469 if (cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20470 var outHtml = outer.innerHTML;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20471 outHtml = outHtml.replace(/NS\d+:href/gi, 'xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20472 cb(outHtml, width, height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20473 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20474 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20475 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20476 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20477
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20478 out$.svgAsDataUri = function (el, options, cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20479 out$.prepareSvg(el, options, function (svg) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20480 var uri = 'data:image/svg+xml;base64,' + window.btoa(reEncode(doctype + svg));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20481 if (cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20482 cb(uri);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20483 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20484 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20485 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20486
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20487 out$.svgAsPngUri = function (el, options, cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20488 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20490 options = options || {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20491 options.encoderType = options.encoderType || 'image/png';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20492 options.encoderOptions = options.encoderOptions || 0.8;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20494 var convertToPng = function (src, w, h) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20495 var canvas = document.createElement('canvas');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20496 var context = canvas.getContext('2d');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20497 canvas.width = w;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20498 canvas.height = h;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20499
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20500 if (options.canvg) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20501 options.canvg(canvas, src);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20502 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20503 context.drawImage(src, 0, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20504 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20505
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20506 if (options.backgroundColor) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20507 context.globalCompositeOperation = 'destination-over';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20508 context.fillStyle = options.backgroundColor;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20509 context.fillRect(0, 0, canvas.width, canvas.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20510 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20511
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20512 var png;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20513 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20514 png = canvas.toDataURL(options.encoderType, options.encoderOptions);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20515 } catch (e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20516 if (typeof SecurityError !== 'undefined' && e instanceof SecurityError || e.name == "SecurityError") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20517 console.error("Rendered SVG images cannot be downloaded in this browser.");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20518 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20519 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20520 throw e;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20521 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20522 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20523 cb(png);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20524 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20525
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20526 if (options.canvg) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20527 out$.prepareSvg(el, options, convertToPng);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20528 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20529 out$.svgAsDataUri(el, options, function (uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20530 var image = new Image();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20532 image.onload = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20533 convertToPng(image, image.width, image.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20534 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20536 image.onerror = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20537 console.error('There was an error loading the data URI as an image on the following SVG\n', window.atob(uri.slice(26)), '\n', "Open the following link to see browser's diagnosis\n", uri);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20538 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20540 image.src = uri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20541 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20542 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20543 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20545 out$.download = function (name, uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20546 if (navigator.msSaveOrOpenBlob) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20547 navigator.msSaveOrOpenBlob(uriToBlob(uri), name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20548 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20549 var saveLink = document.createElement('a');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20550 var downloadSupported = 'download' in saveLink;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20551 if (downloadSupported) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20552 saveLink.download = name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20553 saveLink.href = uri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20554 saveLink.style.display = 'none';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20555 document.body.appendChild(saveLink);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20556 saveLink.click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20557 document.body.removeChild(saveLink);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20558 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20559 window.open(uri, '_temp', 'menubar=no,toolbar=no,status=no');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20560 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20561 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20562 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20564 function uriToBlob(uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20565 var byteString = window.atob(uri.split(',')[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20566 var mimeString = uri.split(',')[0].split(':')[1].split(';')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20567 var buffer = new ArrayBuffer(byteString.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20568 var intArray = new Uint8Array(buffer);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20569 for (var i = 0; i < byteString.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20570 intArray[i] = byteString.charCodeAt(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20571 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20572 return new Blob([buffer], { type: mimeString });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20573 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20575 out$.saveSvg = function (el, name, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20576 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20578 options = options || {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20579 out$.svgAsDataUri(el, options, function (uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20580 out$.download(name, uri);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20581 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20582 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20583
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20584 out$.saveSvgAsPng = function (el, name, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20585 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20587 options = options || {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20588 out$.svgAsPngUri(el, options, function (uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20589 out$.download(name, uri);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20590 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20591 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20593 // if define is defined create as an AMD module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20594 if (true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20595 !(__WEBPACK_AMD_DEFINE_RESULT__ = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20596 return out$;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20597 }.call(exports, __webpack_require__, exports, module), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20598 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20599 })();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20600
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20601 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20602 /* 242 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20603 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20605 var make_modal_skeleton = __webpack_require__(243);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20606
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20607 module.exports = function ini_modals(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20609 // share modal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20610 ///////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20611 var share_modal = make_modal_skeleton(params, 'share_info');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20613 share_modal.header.append('a').attr('target', '_blank').attr('href', '/clustergrammer/');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20615 share_modal.header.append('h4').classed('modal-title', true).html('Share the visualization using the current URL:');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20617 share_modal.body.append('input').classed('bootstrap_highlight', true).classed('share_url', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20618
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20619 // picture modal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20620 ///////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20621 var screenshot_modal = make_modal_skeleton(params, 'picture_info');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20622
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20623 screenshot_modal.header.append('h4').classed('modal-title', true).html('Save a snapshot of the visualization');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20625 screenshot_modal.body.append('div').classed('download_buttons', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20626
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20627 // dendro modal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20628 ///////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20629 var dendro_modal = make_modal_skeleton(params, 'dendro_info');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20630
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20631 dendro_modal.header.append('h4').classed('modal-title', true).html('Cluster Information');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20633 dendro_modal.body.append('g').classed('cluster_info_container', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20635 dendro_modal.body.append('div').classed('dendro_text', true).append('input').classed('bootstrap_highlight', true).classed('current_names', true).style('width', '100%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20636 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20637
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20638 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20639 /* 243 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20640 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20642 module.exports = function make_modal_skeleton(params, modal_class) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20644 var modal_skeleton = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20646 var modal = d3.select(params.root).append('div').classed('modal', true).classed('fade', true).classed(modal_class, true).attr('role', 'dialog');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20647
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20648 var modal_dialog = modal.append('div').classed('modal-dialog', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20649
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20650 var modal_content = modal_dialog.append('div').classed('modal-content', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20652 modal_skeleton.header = modal_content.append('div').classed('modal-header', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20654 modal_skeleton.header.append('button').attr('type', 'button').classed('close', true).attr('data-dismiss', 'modal').html('&times;');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20656 modal_skeleton.body = modal_content.append('div').classed('modal-body', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20658 return modal_skeleton;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20659 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20661 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20662 /* 244 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20663 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20665 module.exports = function set_up_opacity_slider(sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20666
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20667 var slider_container = sidebar.append('div').classed('opacity_slider_container', true).style('margin-top', '5px').style('padding-left', '10px').style('padding-right', '10px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20668
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20669 slider_container.append('div').classed('sidebar_text', true).classed('opacity_slider_text', true).style('margin-bottom', '3px').text('Opacity Slider');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20670
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20671 slider_container.append('div').classed('slider', true).classed('opacity_slider', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20672 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20674 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20675 /* 245 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20676 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20678 module.exports = function make_colorbar(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20679
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20680 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20681
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20682 d3.select(params.root + ' .sidebar_wrapper').append('div').classed('sidebar_text', true).style('padding-left', '10px').style('padding-top', '5px').text('Matrix Values');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20683
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20684 var colorbar_width = params.sidebar.width - 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20685 var colorbar_height = 13;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20686 var svg_height = 3 * colorbar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20687 var svg_width = 1.2 * colorbar_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20688 var low_left_margin = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20689 var top_margin = 33;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20690 var high_left_margin = colorbar_width + 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20691 var bar_margin_left = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20692 var bar_margin_top = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20693
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20694 var network_data = params.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20695
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20696 /* var max_link = _.max(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20697 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20698 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20700 var min_link = _.min(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20701 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20702 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20703 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20704 var main_svg = d3.select(params.root + ' .sidebar_wrapper').append('svg').attr('height', svg_height + 'px').attr('width', svg_width + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20705
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20706 //Append a defs (for definition) element to your SVG
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20707 var defs = main_svg.append("defs");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20708
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20709 //Append a linearGradient element to the defs and give it a unique id
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20710 var linearGradient = defs.append("linearGradient").attr("id", "linear-gradient");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20712 var special_case = 'none';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20714 /* // no negative numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20715 if (min_link >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20716
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20717 //Set the color for the start (0%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20718 linearGradient.append("stop").attr("offset", "0%").attr("stop-color", "white");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20719
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20720 //Set the color for the end (100%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20721 linearGradient.append("stop").attr("offset", "100%").attr("stop-color", params.tile_colors[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20723 special_case = 'all_postiive';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20725 // no positive numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20726 } else if (max_link <= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20727
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20728 //Set the color for the start (0%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20729 linearGradient.append("stop").attr("offset", "0%").attr("stop-color", params.tile_colors[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20731 //Set the color for the end (100%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20732 linearGradient.append("stop").attr("offset", "100%").attr("stop-color", "white");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20734 special_case = 'all_negative';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20735 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20737 // both postive and negative numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20738 else {*/
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20739 //Set the color for the start (0%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20740 linearGradient.append("stop").attr("offset", "0%").attr("stop-color", params.tile_colors[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20742 //Set the color for the end (100%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20743 linearGradient.append("stop").attr("offset", "50%").attr("stop-color", "white");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20745 //Set the color for the end (100%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20746 linearGradient.append("stop").attr("offset", "100%").attr("stop-color", params.tile_colors[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20747 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20748 // make colorbar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20749 main_svg.append('rect').classed('background', true).attr('height', colorbar_height + 'px').attr('width', colorbar_width + 'px').attr('fill', 'url(#linear-gradient)').attr('transform', 'translate(' + bar_margin_left + ', ' + bar_margin_top + ')').attr('stroke', 'grey').attr('stroke-width', '0.25px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20751 // make title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20752 ///////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20753
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20754 var max_abs_val = Math.abs(Math.round(params.matrix.true_max * 10) / 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20755 var min_abs_val = Math.abs(Math.round(params.matrix.true_min * 10) / 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20756 var font_size = 13;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20757
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20758 main_svg.append('text').text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20759 var inst_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20760 if (params.matrix.true_min < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20761 inst_string = '-' + min_abs_val.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20762 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20763 inst_string = min_abs_val.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20764 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20765 return inst_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20766 }).style('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').style('font-weight', 300).style('font-size', font_size).attr('transform', 'translate(' + low_left_margin + ',' + top_margin + ')').attr('text-anchor', 'start');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20768 main_svg.append('text').text(max_abs_val.toLocaleString()).text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20769 return max_abs_val.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20770 }).style('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').style('font-weight', 300).style('font-size', font_size).attr('transform', 'translate(' + high_left_margin + ',' + top_margin + ')').attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20771 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20772
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20773 /***/ }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20774 /******/ ]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"
azomics
parents:
diff changeset
20775 //# sourceMappingURL=clustergrammer.js.map